pycom14g09160

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000366
Physical Location & Seq
Reverse (-)
10782774 .. 10783660
887 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g09160.1

Sequence Viewer

Length: 690 bp
ATGAAAGGAGTTCATTTCCCTGTAACTGCTGCTGCCCTGTCAGTATTAGCATTCGCCACCCTCCTTGCCTCTGCCTCTGATCCCGATCCTCTTCAGGACTTTTGTGTAGCAATTAATAACACCGATTCTGCTGCAGTGTTTGTGAACGGGAAGTTCTGCAAGGACCCAAAACTTGCATCAGCAAACGATTTCTTCTCTGACAAGCTCCGGTACCCCGGAAACACATTGAATCCGGTCGGTTCAATTGTTACGGCAGCGAACGTGGATAATATACCCGGACTCAACACTCTCGGCATATCCTTTGCTCGTGTAGACTTTGCACCAAATGGCCTCAATCCTCCTCACACTCACCCTCGTGCCACGGAGATCCTCATAGTCGTGGAAGGCTCACTCTACGTCGGATTTGTCACATCCAATGGCGACGGCAATCGGCTGTTCACCAAAGTGTTGTACAAGGGAGATGTGTTTGTATTCCCAATCGGTCTCATTCACTTCCAACTTAATGTCGGAAAAACCAATGCTTTGGCCATAGCCGGTCTCAGCAGCCAGAACCCAGGAGTGATCACCATTGCGAATGCAGTCTTCGGATCCAACCCTCCCATCAACCCTGATGTTTTGGCCAAGGCATTCCAGGTGGACGATAATGTGGTTGATTATCTTCAGAAACAGTTTTGGTACAATAACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

230

Amino Acids

24.35

Weight (kDa)

5.7

Isoelectric Point (pI)

10.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 69 - 217 1.6e-56 Cupin
Cupin_2 PF07883 103 - 174 1.5e-07 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 210
AccB1I GGYRCC 1 cut(s) 210
AccI GTMKAC 1 cut(s) 312
AclWI GGATC 5 cut(s) 74, 80, 361, 582, 595
AcoI YGGCCR 2 cut(s) 525, 618
AcuI CTGAAG 2 cut(s) 77, 644
AfaI GTAC 3 cut(s) 212, 452, 677
AgsI TTSAA 2 cut(s) 229, 243
AjnI CCWGG 2 cut(s) 553, 630
AleI CACNNNNGTG 2 cut(s) 354, 443
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Alw26I GTCTC 2 cut(s) 488, 542
AlwI GGATC 5 cut(s) 74, 80, 361, 582, 595
AoxI GGCC 3 cut(s) 328, 525, 618
ApeKI GCWGC 5 cut(s) 29, 32, 131, 254, 543
AseI ATTAAT 1 cut(s) 114
Asp718I GGTACC 1 cut(s) 210
AspS9I GGNCC 1 cut(s) 163
AsuC2I CCSGG 2 cut(s) 216, 276
AsuHPI GGTGA 3 cut(s) 341, 430, 556
AvaII GGWCC 1 cut(s) 163
BalI TGGCCA 2 cut(s) 527, 620
BamHI GGATCC 1 cut(s) 587
BanI GGYRCC 1 cut(s) 210
BauI CACGAG 2 cut(s) 306, 354
BbsI GAAGAC 1 cut(s) 574
BbvI GCAGC 5 cut(s) 16, 19, 118, 266, 555
BccI CCATC 1 cut(s) 608
BceAI ACGGC 2 cut(s) 267, 439
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BciT130I CCWGG 2 cut(s) 555, 632
BclI TGATCA 1 cut(s) 561
BcnI CCSGG 2 cut(s) 216, 276
BcoDI GTCTC 2 cut(s) 488, 542
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 5 cut(s) 30, 33, 132, 255, 544
BlsI GCNGC 5 cut(s) 31, 34, 133, 256, 545
Bme1390I CCNGG 4 cut(s) 216, 276, 555, 632
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 3 cut(s) 165, 212, 589
BmrFI CCNGG 4 cut(s) 216, 276, 555, 632
BmsI GCATC 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 574
BpuMI CCSGG 2 cut(s) 216, 276
BsaBI GATNNNNATC 1 cut(s) 84
BsaI GGTCTC 2 cut(s) 488, 542
BsaJI CCNNGG 4 cut(s) 214, 360, 553, 621
BsaWI WCCGGW 2 cut(s) 207, 232
Bse118I RCCGGY 1 cut(s) 533
Bse3DI GCAATG 1 cut(s) 567
Bse8I GATNNNNATC 1 cut(s) 84
BseBI CCWGG 2 cut(s) 555, 632
BseDI CCNNGG 4 cut(s) 214, 360, 553, 621
BseGI GGATG 1 cut(s) 410
BseJI GATNNNNATC 1 cut(s) 84
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 1 cut(s) 553
BseRI GAGGAG 1 cut(s) 330
BseXI GCAGC 5 cut(s) 16, 19, 118, 266, 555
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 3 cut(s) 330, 527, 620
BshNI GGYRCC 1 cut(s) 210
BsiEI CGRYCG 1 cut(s) 237
BsiSI CCGG 5 cut(s) 208, 216, 233, 276, 534
BsmAI GTCTC 2 cut(s) 488, 542
BsmI GAATGC 3 cut(s) 50, 580, 626
BsnI GGCC 3 cut(s) 330, 527, 620
Bso31I GGTCTC 2 cut(s) 488, 542
Bsp1407I TGTACA 1 cut(s) 450
Bsp143I GATC 5 cut(s) 79, 85, 366, 561, 587
BspANI GGCC 3 cut(s) 330, 527, 620
BspCNI CTCAG 1 cut(s) 552
BspLI GGNNCC 3 cut(s) 165, 212, 589
BspMAI CTGCAG 1 cut(s) 136
BspPI GGATC 5 cut(s) 74, 80, 361, 582, 595
BspT107I GGYRCC 1 cut(s) 210
BspTNI GGTCTC 2 cut(s) 488, 542
BsrDI GCAATG 1 cut(s) 567
BsrFI RCCGGY 1 cut(s) 533
BsrGI TGTACA 1 cut(s) 450
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 4 cut(s) 214, 360, 553, 621
BssMI GATC 5 cut(s) 79, 85, 366, 561, 587
BssSI CACGAG 2 cut(s) 306, 354
BssT1I CCWWGG 1 cut(s) 621
Bst2BI CACGAG 2 cut(s) 306, 354
Bst2UI CCWGG 2 cut(s) 555, 632
Bst4CI ACNGT 2 cut(s) 669, 686
Bst6I CTCTTC 1 cut(s) 96
BstAUI TGTACA 1 cut(s) 450
BstDEI CTNAG 1 cut(s) 539
BstDSI CCRYGG 1 cut(s) 360
BstF5I GGATG 1 cut(s) 410
BstKTI GATC 5 cut(s) 82, 88, 369, 564, 590
BstMAI GTCTC 2 cut(s) 488, 542
BstMBI GATC 5 cut(s) 79, 85, 366, 561, 587
BstMCI CGRYCG 1 cut(s) 237
BstNI CCWGG 2 cut(s) 555, 632
BstSCI CCNGG 4 cut(s) 214, 274, 553, 630
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 5 cut(s) 16, 19, 118, 266, 555
BstV2I GAAGAC 1 cut(s) 574
BstX2I RGATCY 2 cut(s) 366, 587
BstXI CCANNNNNNTGG 1 cut(s) 523
BstYI RGATCY 2 cut(s) 366, 587
BsuRI GGCC 3 cut(s) 330, 527, 620
BtgI CCRYGG 1 cut(s) 360
BtsCI GGATG 1 cut(s) 410
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 533
Cfr13I GGNCC 1 cut(s) 163
Csp6I GTAC 3 cut(s) 211, 451, 676
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviJI RGCY 8 cut(s) 205, 330, 387, 433, 527, 533, 546, 620
CviKI_1 RGCY 8 cut(s) 205, 330, 387, 433, 527, 533, 546, 620
CviQI GTAC 3 cut(s) 211, 451, 676
DdeI CTNAG 1 cut(s) 539
DpnI GATC 5 cut(s) 81, 87, 368, 563, 589
DpnII GATC 5 cut(s) 79, 85, 366, 561, 587
EaeI YGGCCR 2 cut(s) 525, 618
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 621
Eco31I GGTCTC 2 cut(s) 488, 542
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 2 cut(s) 77, 644
EcoO109I RGGNCCY 1 cut(s) 163
EcoRII CCWGG 2 cut(s) 553, 630
EcoT14I CCWWGG 1 cut(s) 621
ErhI CCWWGG 1 cut(s) 621
FaiI YATR 4 cut(s) 272, 296, 374, 530
FbaI TGATCA 1 cut(s) 561
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 5 cut(s) 30, 33, 132, 255, 544
FokI GGATG 1 cut(s) 397
Fsp4HI GCNGC 5 cut(s) 30, 33, 132, 255, 544
GluI GCNGC 5 cut(s) 30, 33, 132, 255, 544
HaeIII GGCC 3 cut(s) 330, 527, 620
HapII CCGG 5 cut(s) 208, 216, 233, 276, 534
HinfI GANTC 3 cut(s) 125, 229, 279
HpaII CCGG 5 cut(s) 208, 216, 233, 276, 534
HphI GGTGA 3 cut(s) 341, 430, 556
Hpy166II GTNNAC 4 cut(s) 145, 313, 438, 637
Hpy188I TCNGA 6 cut(s) 79, 199, 401, 509, 587, 663
Hpy188III TCNNGA 2 cut(s) 83, 95
Hpy8I GTNNAC 4 cut(s) 145, 313, 438, 637
Hpy99I CGWCG 2 cut(s) 401, 425
HpyAV CCTTC 1 cut(s) 377
HpyCH4III ACNGT 2 cut(s) 669, 686
HpyCH4IV ACGT 2 cut(s) 261, 396
HpyCH4V TGCA 5 cut(s) 134, 159, 176, 320, 578
HpyF3I CTNAG 1 cut(s) 539
HpySE526I ACGT 2 cut(s) 261, 396
KpnI GGTACC 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 561
Kzo9I GATC 5 cut(s) 79, 85, 366, 561, 587
LmnI GCTCC 1 cut(s) 210
Lsp1109I GCAGC 5 cut(s) 16, 19, 118, 266, 555
LweI GCATC 1 cut(s) 185
MaeII ACGT 2 cut(s) 261, 396
MaeIII GTNAC 3 cut(s) 22, 247, 406
MalI GATC 5 cut(s) 81, 87, 368, 563, 589
MboI GATC 5 cut(s) 79, 85, 366, 561, 587
MboII GAAGA 4 cut(s) 83, 184, 574, 650
MfeI CAATTG 1 cut(s) 243
MflI RGATCY 2 cut(s) 366, 587
MlsI TGGCCA 2 cut(s) 527, 620
MluCI AATT 2 cut(s) 111, 243
MluNI TGGCCA 2 cut(s) 527, 620
MlyI GAGTC 1 cut(s) 273
MmeI TCCRAC 4 cut(s) 379, 487, 520, 615
Mox20I TGGCCA 2 cut(s) 527, 620
MscI TGGCCA 2 cut(s) 527, 620
MseI TTAA 3 cut(s) 114, 501, 688
MslI CAYNNNNRTG 3 cut(s) 354, 377, 443
Msp20I TGGCCA 2 cut(s) 527, 620
MspI CCGG 5 cut(s) 208, 216, 233, 276, 534
MspR9I CCNGG 4 cut(s) 216, 276, 555, 632
MunI CAATTG 1 cut(s) 243
Mva1269I GAATGC 3 cut(s) 50, 580, 626
MvaI CCWGG 2 cut(s) 555, 632
NciI CCSGG 2 cut(s) 216, 276
NdeII GATC 5 cut(s) 79, 85, 366, 561, 587
NlaIV GGNNCC 3 cut(s) 165, 212, 589
NmeAIII GCCGAG 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 406
OliI CACNNNNGTG 2 cut(s) 354, 443
PctI GAATGC 3 cut(s) 50, 580, 626
PfeI GAWTC 2 cut(s) 125, 229
PkrI GCNGC 5 cut(s) 31, 34, 133, 256, 545
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
PpuMI RGGWCCY 1 cut(s) 163
PshBI ATTAAT 1 cut(s) 114
Psp5II RGGWCCY 1 cut(s) 163
Psp6I CCWGG 2 cut(s) 553, 630
PspGI CCWGG 2 cut(s) 553, 630
PspN4I GGNNCC 3 cut(s) 165, 212, 589
PspPI GGNCC 1 cut(s) 163
PspPPI RGGWCCY 1 cut(s) 163
PstI CTGCAG 1 cut(s) 136
PsuI RGATCY 2 cut(s) 366, 587
RsaI GTAC 3 cut(s) 212, 452, 677
RsaNI GTAC 3 cut(s) 211, 451, 676
RseI CAYNNNNRTG 3 cut(s) 354, 377, 443
SaqAI TTAA 3 cut(s) 114, 501, 688
SatI GCNGC 5 cut(s) 30, 33, 132, 255, 544
Sau3AI GATC 5 cut(s) 79, 85, 366, 561, 587
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 4 cut(s) 216, 276, 555, 632
SetI ASST 4 cut(s) 207, 264, 399, 636
SfaNI GCATC 1 cut(s) 185
SfcI CTRYAG 1 cut(s) 132
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 3 cut(s) 354, 377, 443
Sse9I AATT 2 cut(s) 111, 243
StyD4I CCNGG 4 cut(s) 214, 274, 553, 630
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 2 cut(s) 669, 686
TaiI ACGT 2 cut(s) 264, 399
TaqII GACCGA 1 cut(s) 470
TasI AATT 2 cut(s) 111, 243
TatI WGTACW 1 cut(s) 450
TfiI GAWTC 2 cut(s) 125, 229
Tru1I TTAA 3 cut(s) 114, 501, 688
Tru9I TTAA 3 cut(s) 114, 501, 688
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 5 cut(s) 29, 32, 131, 254, 543
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 377
TspRI CASTG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 163
VspI ATTAAT 1 cut(s) 114
XmiI GTMKAC 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.