Prupe.5G240700_v2.0.a1

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000366
Physical Location & Seq
Reverse (-)
18132225 .. 18133519
1295 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G240700.1

Sequence Viewer

Length: 684 bp
ATGATGAAAGGTGTTCATTTCCAACTATCTATTGTTGCCACATTGGCATTGGCCACCTTCCTTGTATCTGCCTCAGACCCCAGTCCTCTGCAGGACTTCTGCGTAGCAATTAATAACACCGAATCTGCTGTGTTTGTGAATGGGAAATTCTGCAAGGACCCGAAGTTTGTGACAGCAAATGATTTTTTCTTCTCCGGGCTCAGAATTCCTGGAAACACATCAAATCCAGTTGGTTCATTCGTGACACCGGCGAATGTGGAGCAAATAGCTGGACTTAACACTCTTGGCATATCCTTGGCTCGCATTGACTTTGCACCAAACGGCCTCAACCCTCCTCACACCCACCCACGCGGCACAGAATTTCTCATAGTCTTGGAAGGCACACTCTATGTTGGCTTCGTCACATCCAATGGCGACAACAATCGGCTGTTCACCAAGGTGTTGAACAAGGGAGATGTGTTTGTGTTCCCAGTTGGTCTCATTCACTTCCAGCTCAACGTGGGACACGTCAACGCTTTAGCCGTTGCAGGTCTGAGCAGCCAGAACCCAGGAGTTATCACCATAGCCAATGCAGTGTTCGGGTCAAACCCTCCTATCAACCCTGATGTTCTAGCCAAGGCATTCCAGATCGACGACAAGGAGGTTGAGTATCTTCAGAAACAGTTCTGGTACAACAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

228

Amino Acids

24.47

Weight (kDa)

5.9

Isoelectric Point (pI)

16.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 518
AccII CGCG 1 cut(s) 351
AciI CCGC 1 cut(s) 351
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 3 cut(s) 146, 204, 359
AcuI CTGAAG 1 cut(s) 638
AfaI GTAC 1 cut(s) 671
AflIII ACRYGT 1 cut(s) 505
AgsI TTSAA 1 cut(s) 445
AjiI CACGTC 1 cut(s) 508
AjnI CCWGG 2 cut(s) 208, 547
AjuI GAANNNNNNNTTGG 2 cut(s) 560, 592
AleI CACNNNNGTG 1 cut(s) 437
AluBI AGCT 2 cut(s) 269, 493
AluI AGCT 2 cut(s) 269, 493
Alw26I GTCTC 1 cut(s) 482
AoxI GGCC 2 cut(s) 51, 322
ApeKI GCWGC 1 cut(s) 537
ApoI RAATTY 3 cut(s) 146, 204, 359
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AseI ATTAAT 1 cut(s) 111
Asp700I GAANNNNTTC 1 cut(s) 662
AspS9I GGNCC 1 cut(s) 157
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 2 cut(s) 424, 550
AvaII GGWCC 1 cut(s) 157
BalI TGGCCA 1 cut(s) 53
BanII GRGCYC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 549
BceAI ACGGC 2 cut(s) 337, 506
BciT130I CCWGG 2 cut(s) 210, 549
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 1 cut(s) 611
BfmI CTRYAG 1 cut(s) 89
BfuAI ACCTGC 1 cut(s) 518
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 2 cut(s) 352, 538
BlsI GCNGC 2 cut(s) 353, 539
Bme1390I CCNGG 3 cut(s) 196, 210, 549
Bme18I GGWCC 1 cut(s) 157
BmgBI CACGTC 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 3 cut(s) 196, 210, 549
BmrI ACTGGG 2 cut(s) 75, 464
BmuI ACTGGG 2 cut(s) 75, 464
BoxI GACNNNNGTC 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 196
BsaI GGTCTC 1 cut(s) 482
BsaJI CCNNGG 4 cut(s) 294, 435, 547, 615
BsaXI ACNNNNNCTCC 2 cut(s) 632, 662
Bse118I RCCGGY 1 cut(s) 247
Bse1I ACTGG 3 cut(s) 81, 227, 470
BseBI CCWGG 2 cut(s) 210, 549
BseDI CCNNGG 4 cut(s) 294, 435, 547, 615
BseGI GGATG 1 cut(s) 404
BseMII CTCAG 3 cut(s) 87, 214, 524
BseNI ACTGG 3 cut(s) 81, 227, 470
BseRI GAGGAG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 549
Bsh1236I CGCG 1 cut(s) 351
BshFI GGCC 2 cut(s) 53, 324
BsiSI CCGG 2 cut(s) 195, 248
BslFI GGGAC 1 cut(s) 516
BsmAI GTCTC 1 cut(s) 482
BsmFI GGGAC 1 cut(s) 516
BsmI GAATGC 1 cut(s) 620
BsnI GGCC 2 cut(s) 53, 324
Bso31I GGTCTC 1 cut(s) 482
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 1 cut(s) 627
BspACI CCGC 1 cut(s) 351
BspANI GGCC 2 cut(s) 53, 324
BspCNI CTCAG 3 cut(s) 86, 213, 525
BspFNI CGCG 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 159
BspMAI CTGCAG 1 cut(s) 93
BspMI ACCTGC 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 482
BsrFI RCCGGY 1 cut(s) 247
BsrI ACTGG 3 cut(s) 81, 227, 470
BssAI RCCGGY 1 cut(s) 247
BssECI CCNNGG 4 cut(s) 294, 435, 547, 615
BssMI GATC 1 cut(s) 627
BssT1I CCWWGG 3 cut(s) 294, 435, 615
Bst2UI CCWGG 2 cut(s) 210, 549
Bst4CI ACNGT 1 cut(s) 663
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 3 cut(s) 73, 200, 533
BstF5I GGATG 1 cut(s) 404
BstFNI CGCG 1 cut(s) 351
BstKTI GATC 1 cut(s) 630
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 1 cut(s) 627
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 2 cut(s) 210, 549
BstPAI GACNNNNGTC 1 cut(s) 81
BstSCI CCNGG 3 cut(s) 194, 208, 547
BstSFI CTRYAG 1 cut(s) 89
BstUI CGCG 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 549
BsuRI GGCC 2 cut(s) 53, 324
BtrI CACGTC 1 cut(s) 508
BtsCI GGATG 1 cut(s) 404
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 1 cut(s) 579
BveI ACCTGC 1 cut(s) 518
Cac8I GCNNGC 1 cut(s) 301
Cfr10I RCCGGY 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 157
Csp6I GTAC 1 cut(s) 670
CspCI CAANNNNNGTGG 2 cut(s) 43, 78
CviQI GTAC 1 cut(s) 670
DdeI CTNAG 3 cut(s) 73, 200, 533
DpnI GATC 1 cut(s) 629
DpnII GATC 1 cut(s) 627
EaeI YGGCCR 1 cut(s) 51
Eco130I CCWWGG 3 cut(s) 294, 435, 615
Eco24I GRGCYC 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 482
Eco47I GGWCC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 638
EcoO109I RGGNCCY 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 204
EcoRII CCWGG 2 cut(s) 208, 547
EcoT14I CCWWGG 3 cut(s) 294, 435, 615
EcoT38I GRGCYC 1 cut(s) 201
ErhI CCWWGG 3 cut(s) 294, 435, 615
FaiI YATR 4 cut(s) 290, 368, 390, 563
FaqI GGGAC 1 cut(s) 516
Fnu4HI GCNGC 2 cut(s) 352, 538
FokI GGATG 1 cut(s) 391
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 2 cut(s) 352, 538
FspBI CTAG 1 cut(s) 611
GluI GCNGC 2 cut(s) 352, 538
HaeIII GGCC 2 cut(s) 53, 324
HapII CCGG 2 cut(s) 195, 248
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 1 cut(s) 122
HpaII CCGG 2 cut(s) 195, 248
HphI GGTGA 2 cut(s) 424, 550
Hpy166II GTNNAC 2 cut(s) 432, 511
Hpy188I TCNGA 4 cut(s) 76, 203, 534, 657
Hpy188III TCNNGA 2 cut(s) 241, 625
Hpy8I GTNNAC 2 cut(s) 432, 511
Hpy99I CGWCG 1 cut(s) 635
HpyAV CCTTC 2 cut(s) 67, 371
HpyCH4III ACNGT 1 cut(s) 663
HpyCH4IV ACGT 2 cut(s) 498, 507
HpyCH4V TGCA 5 cut(s) 91, 153, 314, 527, 572
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 3 cut(s) 73, 200, 533
HpySE526I ACGT 2 cut(s) 498, 507
Kzo9I GATC 1 cut(s) 627
LmnI GCTCC 1 cut(s) 259
Lsp1109I GCAGC 1 cut(s) 549
MaeI CTAG 1 cut(s) 611
MaeII ACGT 2 cut(s) 498, 507
MaeIII GTNAC 3 cut(s) 169, 241, 400
MalI GATC 1 cut(s) 629
MboI GATC 1 cut(s) 627
MboII GAAGA 2 cut(s) 181, 644
MhlI GDGCHC 1 cut(s) 201
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 5 cut(s) 108, 146, 204, 359, 679
MluNI TGGCCA 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 7 cut(s) 82, 96, 335, 342, 345, 600, 634
Mox20I TGGCCA 1 cut(s) 53
MroXI GAANNNNTTC 1 cut(s) 662
MscI TGGCCA 1 cut(s) 53
MseI TTAA 3 cut(s) 111, 276, 682
MslI CAYNNNNRTG 1 cut(s) 437
Msp20I TGGCCA 1 cut(s) 53
MspI CCGG 2 cut(s) 195, 248
MspR9I CCNGG 3 cut(s) 196, 210, 549
Mva1269I GAATGC 1 cut(s) 620
MvaI CCWGG 2 cut(s) 210, 549
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 1 cut(s) 44
NciI CCSGG 1 cut(s) 196
NdeII GATC 1 cut(s) 627
NlaIV GGNNCC 1 cut(s) 159
NmuCI GTSAC 3 cut(s) 169, 241, 400
OliI CACNNNNGTG 1 cut(s) 437
PcsI WCGNNNNNNNCGW 2 cut(s) 504, 519
PctI GAATGC 1 cut(s) 620
PdmI GAANNNNTTC 1 cut(s) 662
PfeI GAWTC 1 cut(s) 122
PfoI TCCNGGA 1 cut(s) 208
PkrI GCNGC 2 cut(s) 353, 539
PpuMI RGGWCCY 1 cut(s) 157
PshAI GACNNNNGTC 1 cut(s) 81
PshBI ATTAAT 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 157
Psp6I CCWGG 2 cut(s) 208, 547
PspGI CCWGG 2 cut(s) 208, 547
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 157
PspPPI RGGWCCY 1 cut(s) 157
PstI CTGCAG 1 cut(s) 93
RsaI GTAC 1 cut(s) 671
RsaNI GTAC 1 cut(s) 670
RseI CAYNNNNRTG 1 cut(s) 437
SaqAI TTAA 3 cut(s) 111, 276, 682
SatI GCNGC 2 cut(s) 352, 538
Sau3AI GATC 1 cut(s) 627
Sau96I GGNCC 1 cut(s) 157
ScrFI CCNGG 3 cut(s) 196, 210, 549
SduI GDGCHC 1 cut(s) 201
SetI ASST 9 cut(s) 13, 59, 271, 441, 495, 501, 510, 532, 645
SfcI CTRYAG 1 cut(s) 89
SgrAI CRCCGGYG 1 cut(s) 247
SinI GGWCC 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 437
Sse9I AATT 5 cut(s) 108, 146, 204, 359, 679
SsiI CCGC 1 cut(s) 351
SspMI CTAG 1 cut(s) 611
StyD4I CCNGG 3 cut(s) 194, 208, 547
StyI CCWWGG 3 cut(s) 294, 435, 615
TaaI ACNGT 1 cut(s) 663
TaiI ACGT 2 cut(s) 501, 510
TaqI TCGA 1 cut(s) 630
TasI AATT 5 cut(s) 108, 146, 204, 359, 679
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 3 cut(s) 111, 276, 682
Tru9I TTAA 3 cut(s) 111, 276, 682
TscAI CASTG 1 cut(s) 579
TseFI GTSAC 3 cut(s) 169, 241, 400
TseI GCWGC 1 cut(s) 537
Tsp45I GTSAC 3 cut(s) 169, 241, 400
TspDTI ATGAA 3 cut(s) 5, 20, 225
TspRI CASTG 1 cut(s) 579
VpaK11BI GGWCC 1 cut(s) 157
VspI ATTAAT 1 cut(s) 111
XapI RAATTY 3 cut(s) 146, 204, 359
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 662
XspI CTAG 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.