Rh7DG006500

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000366
Physical Location & Seq
Forward (+)
545147 .. 546176
1030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG006500.1

Sequence Viewer

Length: 741 bp
ATGATGAAAGGTGCTCATTTCCCTACGGCTGCTGCTTATTTCCCTAGTGCTGCTGCTTATTTCCCTACTGCTGCTGCTTTTTCCCTGTTGGCATTGGCAACCTTCCACCTTGTCTCTGCTTCTGATCCTAGTCCTCTCCAAGATTTCTGTGTAGCACTTAACACCACCCAAACTGCTGTTTCTGCTGTGTTTGTGAATGGGAAATTCTGCAAGGACCCAAAGATGGCAACAGCGGATGATTTCTTTTTTTCGGGGCTCCAGATTCCTCGAAACACATCAAATCCGGTTGGTTCCAACGTCACCGCAGTAAACGTGGAGCAAATAGCAGGACTCAACACTCTTGGGATATCCCTGGCTCGCATAGACTATGCACCAAATGGCGGACTAAACCCTCCTCACACCCACCCTCGGGCCTCGGAAATCCTTGTCGTCTTGGAAGGCACTCTCTACGTTGGCTTCGTCACATCCAACCCGGACAACCGCCTCATCACCAAAGTGTTGTACAAGGGAGATGTGTTTGTCTTCCCAGTTGGTCTCATTCACTTCCAGTTCAACGTCGGAAAGGTCAACGCCGTAGCCATTGCCGCTCTTAGCAGCCAGAATCCAGGTGTCATCACCATAGCCAATGCAGTGTTCGGCTCCAACCCTCCAATCAACCCTGATGTGCTCACCAAGGCCTTCCAAGTTGACAACAATATCGTTCAGTATCTCCAGAAACAGTTCTGGTATGACAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

246

Amino Acids

26.3

Weight (kDa)

6.49

Isoelectric Point (pI)

23.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 85 - 234 5.6e-54 Cupin
Cupin_2 PF07883 121 - 194 7e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 587
AciI CCGC 5 cut(s) 233, 303, 381, 481, 585
AclWI GGATC 1 cut(s) 119
AcsI RAATTY 1 cut(s) 203
AfaI GTAC 1 cut(s) 503
AfiI CCNNNNNNNGG 4 cut(s) 223, 380, 408, 409
AgsI TTSAA 1 cut(s) 553
AjnI CCWGG 2 cut(s) 351, 604
AjuI GAANNNNNNNTTGG 2 cut(s) 617, 649
AleI CACNNNNGTG 1 cut(s) 494
Alw21I GWGCWC 2 cut(s) 16, 669
Alw26I GTCTC 2 cut(s) 118, 539
AlwI GGATC 1 cut(s) 119
Ama87I CYCGRG 1 cut(s) 408
AoxI GGCC 2 cut(s) 411, 675
ApeKI GCWGC 7 cut(s) 29, 32, 50, 53, 71, 74, 594
ApoI RAATTY 1 cut(s) 203
Asp700I GAANNNNTTC 1 cut(s) 719
AspS9I GGNCC 2 cut(s) 214, 411
AsuC2I CCSGG 1 cut(s) 473
AsuHPI GGTGA 4 cut(s) 292, 481, 607, 661
AvaI CYCGRG 1 cut(s) 408
AvaII GGWCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 514
Bbv12I GWGCWC 2 cut(s) 16, 669
BbvI GCAGC 7 cut(s) 16, 19, 37, 40, 58, 61, 606
BccI CCATC 1 cut(s) 217
BceAI ACGGC 2 cut(s) 42, 557
BciT130I CCWGG 2 cut(s) 353, 606
BcnI CCSGG 1 cut(s) 473
BcoDI GTCTC 2 cut(s) 118, 539
BfaI CTAG 2 cut(s) 45, 129
BisI GCNGC 8 cut(s) 30, 33, 51, 54, 72, 75, 585, 595
BlsI GCNGC 8 cut(s) 31, 34, 52, 55, 73, 76, 586, 596
Bme1390I CCNGG 3 cut(s) 353, 473, 606
Bme18I GGWCC 1 cut(s) 214
BmeT110I CYCGRG 1 cut(s) 408
BmgT120I GGNCC 2 cut(s) 214, 411
BmiI GGNNCC 4 cut(s) 216, 257, 292, 640
BmrFI CCNGG 3 cut(s) 353, 473, 606
BmrI ACTGGG 1 cut(s) 521
BmuI ACTGGG 1 cut(s) 521
BpiI GAAGAC 1 cut(s) 514
BpmI CTGGAG 2 cut(s) 242, 695
BpuMI CCSGG 1 cut(s) 473
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 4 cut(s) 351, 407, 414, 672
BsaWI WCCGGW 1 cut(s) 283
Bsc4I CCNNNNNNNGG 4 cut(s) 223, 380, 408, 409
Bse1I ACTGG 2 cut(s) 527, 547
Bse3DI GCAATG 1 cut(s) 579
BseBI CCWGG 2 cut(s) 353, 606
BseDI CCNNGG 4 cut(s) 351, 407, 414, 672
BseGI GGATG 2 cut(s) 241, 464
BseLI CCNNNNNNNGG 4 cut(s) 223, 380, 408, 409
BseMI GCAATG 1 cut(s) 579
BseNI ACTGG 2 cut(s) 527, 547
BseRI GAGGAG 1 cut(s) 384
BseXI GCAGC 7 cut(s) 16, 19, 37, 40, 58, 61, 606
BshFI GGCC 2 cut(s) 413, 677
BsiHKAI GWGCWC 2 cut(s) 16, 669
BsiHKCI CYCGRG 1 cut(s) 408
BsiSI CCGG 2 cut(s) 284, 473
BslI CCNNNNNNNGG 4 cut(s) 223, 380, 408, 409
BsmAI GTCTC 2 cut(s) 118, 539
BsnI GGCC 2 cut(s) 413, 677
Bso31I GGTCTC 1 cut(s) 539
BsoBI CYCGRG 1 cut(s) 408
Bsp1286I GDGCHC 3 cut(s) 16, 258, 669
Bsp1407I TGTACA 1 cut(s) 501
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 5 cut(s) 233, 303, 381, 481, 585
BspANI GGCC 2 cut(s) 413, 677
BspLI GGNNCC 4 cut(s) 216, 257, 292, 640
BspPI GGATC 1 cut(s) 119
BspTNI GGTCTC 1 cut(s) 539
BsrBI CCGCTC 1 cut(s) 587
BsrDI GCAATG 1 cut(s) 579
BsrGI TGTACA 1 cut(s) 501
BsrI ACTGG 2 cut(s) 527, 547
BssECI CCNNGG 4 cut(s) 351, 407, 414, 672
BssMI GATC 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 672
Bst2UI CCWGG 2 cut(s) 353, 606
Bst4CI ACNGT 1 cut(s) 720
BstAUI TGTACA 1 cut(s) 501
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 1 cut(s) 590
BstF5I GGATG 2 cut(s) 241, 464
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 2 cut(s) 118, 539
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 2 cut(s) 182, 584
BstNI CCWGG 2 cut(s) 353, 606
BstSCI CCNGG 3 cut(s) 351, 471, 604
BstV1I GCAGC 7 cut(s) 16, 19, 37, 40, 58, 61, 606
BstV2I GAAGAC 1 cut(s) 514
BsuRI GGCC 2 cut(s) 413, 677
BtsCI GGATG 2 cut(s) 241, 464
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 1 cut(s) 636
Cac8I GCNNGC 1 cut(s) 358
Cfr13I GGNCC 2 cut(s) 214, 411
Csp6I GTAC 1 cut(s) 502
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 1 cut(s) 590
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
EciI GGCGGA 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 672
Eco147I AGGCCT 1 cut(s) 677
Eco24I GRGCYC 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 539
Eco32I GATATC 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 408
EcoO109I RGGNCCY 1 cut(s) 214
EcoRII CCWGG 2 cut(s) 351, 604
EcoRV GATATC 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 672
EcoT38I GRGCYC 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 672
FaiI YATR 4 cut(s) 362, 369, 620, 729
Fnu4HI GCNGC 8 cut(s) 30, 33, 51, 54, 72, 75, 585, 595
FokI GGATG 2 cut(s) 248, 451
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 8 cut(s) 30, 33, 51, 54, 72, 75, 585, 595
FspBI CTAG 2 cut(s) 45, 129
GluI GCNGC 8 cut(s) 30, 33, 51, 54, 72, 75, 585, 595
GsuI CTGGAG 2 cut(s) 242, 695
HaeIII GGCC 2 cut(s) 413, 677
HapII CCGG 2 cut(s) 284, 473
HincII GTYRAC 2 cut(s) 568, 688
HindII GTYRAC 2 cut(s) 568, 688
HinfI GANTC 3 cut(s) 262, 330, 601
HpaII CCGG 2 cut(s) 284, 473
HphI GGTGA 4 cut(s) 292, 481, 607, 661
Hpy166II GTNNAC 3 cut(s) 310, 568, 688
Hpy188I TCNGA 3 cut(s) 124, 418, 560
Hpy188III TCNNGA 2 cut(s) 259, 712
Hpy8I GTNNAC 3 cut(s) 310, 568, 688
Hpy99I CGWCG 1 cut(s) 560
HpyAV CCTTC 3 cut(s) 112, 431, 688
HpyCH4III ACNGT 1 cut(s) 720
HpyCH4IV ACGT 4 cut(s) 297, 312, 450, 555
HpyCH4V TGCA 3 cut(s) 210, 371, 629
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 584
HpyF3I CTNAG 1 cut(s) 590
HpySE526I ACGT 4 cut(s) 297, 312, 450, 555
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 3 cut(s) 261, 316, 644
Lsp1109I GCAGC 7 cut(s) 16, 19, 37, 40, 58, 61, 606
MaeI CTAG 2 cut(s) 45, 129
MaeII ACGT 4 cut(s) 297, 312, 450, 555
MaeIII GTNAC 2 cut(s) 298, 460
MalI GATC 1 cut(s) 126
MbiI CCGCTC 1 cut(s) 587
MboI GATC 1 cut(s) 124
MboII GAAGA 1 cut(s) 514
MhlI GDGCHC 3 cut(s) 16, 258, 669
MluCI AATT 2 cut(s) 203, 736
MlyI GAGTC 1 cut(s) 324
MmeI TCCRAC 4 cut(s) 318, 492, 538, 666
MnlI CCTC 8 cut(s) 144, 276, 402, 405, 417, 424, 494, 657
MroXI GAANNNNTTC 1 cut(s) 719
MseI TTAA 2 cut(s) 159, 739
MslI CAYNNNNRTG 1 cut(s) 494
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 2 cut(s) 284, 473
MspR9I CCNGG 3 cut(s) 353, 473, 606
MvaI CCWGG 2 cut(s) 353, 606
MwoI GCNNNNNNNGC 2 cut(s) 182, 584
NciI CCSGG 1 cut(s) 473
NdeII GATC 1 cut(s) 124
NlaIV GGNNCC 4 cut(s) 216, 257, 292, 640
NmuCI GTSAC 2 cut(s) 298, 460
OliI CACNNNNGTG 1 cut(s) 494
PceI AGGCCT 1 cut(s) 677
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 719
PfeI GAWTC 2 cut(s) 262, 601
PkrI GCNGC 8 cut(s) 31, 34, 52, 55, 73, 76, 586, 596
PleI GAGTC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 324
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 351, 604
PspGI CCWGG 2 cut(s) 351, 604
PspN4I GGNNCC 4 cut(s) 216, 257, 292, 640
PspPI GGNCC 2 cut(s) 214, 411
PspPPI RGGWCCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
RseI CAYNNNNRTG 1 cut(s) 494
SaqAI TTAA 2 cut(s) 159, 739
SatI GCNGC 8 cut(s) 30, 33, 51, 54, 72, 75, 585, 595
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 2 cut(s) 214, 411
SchI GAGTC 1 cut(s) 324
ScrFI CCNGG 3 cut(s) 353, 473, 606
SduI GDGCHC 3 cut(s) 16, 258, 669
SetI ASST 9 cut(s) 13, 104, 111, 300, 315, 453, 558, 567, 610
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 494
Sse9I AATT 2 cut(s) 203, 736
SseBI AGGCCT 1 cut(s) 677
SsiI CCGC 5 cut(s) 233, 303, 381, 481, 585
SspMI CTAG 2 cut(s) 45, 129
StuI AGGCCT 1 cut(s) 677
StyD4I CCNGG 3 cut(s) 351, 471, 604
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 1 cut(s) 720
TaiI ACGT 4 cut(s) 300, 315, 453, 558
TaqI TCGA 1 cut(s) 268
TasI AATT 2 cut(s) 203, 736
TatI WGTACW 1 cut(s) 501
TauI GCSGC 1 cut(s) 587
TfiI GAWTC 2 cut(s) 262, 601
Tru1I TTAA 2 cut(s) 159, 739
Tru9I TTAA 2 cut(s) 159, 739
TscAI CASTG 1 cut(s) 636
TseFI GTSAC 2 cut(s) 298, 460
TseI GCWGC 7 cut(s) 29, 32, 50, 53, 71, 74, 594
Tsp45I GTSAC 2 cut(s) 298, 460
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 1 cut(s) 636
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 719
XspI CTAG 2 cut(s) 45, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.