MD10G1022500.v1.1

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000366
Physical Location & Seq
Reverse (-)
2828542 .. 2828778
237 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1022500.v1.1.491

Sequence Viewer

Length: 237 bp
ATGGGAGATGTGTTTGTGTTCCCGATTGGTCTCATTCATTTCCAACTCAATGTCGGAAACGGAAACACAGAAGCCATTGCTGGGCTTAGCAGCCAGAACCCCGGAGTCATCACCATAGCAAATGCAGTGTTTGGCTCCAAGCCTCCCATCAATCCTGATGTTCTAGCCAAGGCCTTCCAAGTGGATAATAAGCTGGTTGATTATCTTCAGAAACAGTTTTGGTACGAGAACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

79

Amino Acids

8.51

Weight (kDa)

4.89

Isoelectric Point (pI)

15.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 2 - 66 4.6e-19 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 81
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 35
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 90
AsuC2I CCSGG 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 103
BbvI GCAGC 1 cut(s) 102
BccI CCATC 1 cut(s) 155
BcnI CCSGG 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 1 cut(s) 164
BisI GCNGC 1 cut(s) 91
BlpI GCTNAGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 102
Bpu1102I GCTNAGC 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 100, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 75
BseDI CCNNGG 2 cut(s) 100, 168
BseLI CCNNNNNNNGG 1 cut(s) 81
BseMI GCAATG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 102
BseYI CCCAGC 1 cut(s) 80
BshFI GGCC 1 cut(s) 173
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 35
BsnI GGCC 1 cut(s) 173
Bso31I GGTCTC 1 cut(s) 35
Bsp1720I GCTNAGC 1 cut(s) 86
BspANI GGCC 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 136
BspTNI GGTCTC 1 cut(s) 35
BsrDI GCAATG 1 cut(s) 75
BssECI CCNNGG 2 cut(s) 100, 168
BssT1I CCWWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 86
BstMAI GTCTC 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 102
BsuRI GGCC 1 cut(s) 173
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
Csp6I GTAC 1 cut(s) 223
CviJI RGCY 8 cut(s) 74, 85, 93, 135, 142, 167, 173, 193
CviKI_1 RGCY 8 cut(s) 74, 85, 93, 135, 142, 167, 173, 193
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 168
Eco147I AGGCCT 1 cut(s) 173
Eco31I GGTCTC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaiI YATR 1 cut(s) 116
Fnu4HI GCNGC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 91
FspBI CTAG 1 cut(s) 164
GluI GCNGC 1 cut(s) 91
GsaI CCCAGC 1 cut(s) 84
HaeIII GGCC 1 cut(s) 173
HapII CCGG 1 cut(s) 102
HinfI GANTC 1 cut(s) 105
HpaII CCGG 1 cut(s) 102
HphI GGTGA 1 cut(s) 103
Hpy188I TCNGA 2 cut(s) 56, 210
Hpy188III TCNNGA 2 cut(s) 22, 155
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 86
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 5 cut(s) 66, 107, 115, 168, 179
Lsp1109I GCAGC 1 cut(s) 102
MaeI CTAG 1 cut(s) 164
MboII GAAGA 1 cut(s) 197
MfeI CAATTG 1 cut(s) 232
MluCI AATT 1 cut(s) 232
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 2 cut(s) 34, 67
MnlI CCTC 1 cut(s) 153
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 102
MunI CAATTG 1 cut(s) 232
NciI CCSGG 1 cut(s) 102
NlaIV GGNNCC 1 cut(s) 136
PceI AGGCCT 1 cut(s) 173
PkrI GCNGC 1 cut(s) 92
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PspFI CCCAGC 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 136
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SatI GCNGC 1 cut(s) 91
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 102
SetI ASST 1 cut(s) 195
Sse9I AATT 1 cut(s) 232
SseBI AGGCCT 1 cut(s) 173
SspMI CTAG 1 cut(s) 164
StuI AGGCCT 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 100
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 216
TasI AATT 1 cut(s) 232
TscAI CASTG 1 cut(s) 132
TseI GCWGC 1 cut(s) 90
TspDTI ATGAA 1 cut(s) 26
TspGWI ACGGA 1 cut(s) 75
TspRI CASTG 1 cut(s) 132
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.