Prupe.8G025700_v2.0.a1

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000366
Physical Location & Seq
Reverse (-)
2342030 .. 2343052
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G025700.1

Sequence Viewer

Length: 684 bp
ATGGAAGGTGTTCATTTTCTTATAAACACTCTTGCCATATTGGCATTTGCAACCATCCTTGTCTTTGCCTCTGACCCTAGCCCTCTTCAGGACTTCTGTGTAGCACTTAATGACACCAAATCTGCTGTGTTTGTGAATGGGAAATTCTGCAAGGACCCAAAGCTTGCCAATGCAAATGATTTCTTCTTTTCTGGGCTTCAAATTGCAAGAAGCACACAAAATCCACTTGGTTCAACAGTGACAGCCGTGAATGTGGACCAAATAGCAGGACTGAACACTCTTGGTATATCCCTGGCTCGCATAGACTTTGCACGAAATGGCCTAAACCCTCCTCATACTCACCCTCGTGCCACCGAAATCCTTTTAGTCTTGGAAGGAACACTCTATGTTGGTTTCGTCACATCGAATGCCGATAATAATCGCCTATTCACTAAAGTGTTGAACAAGGGAGATGTGTTTGTGTTCCCAATTGGCCTCATTCACTTCCAACTCAATGTGGGAGAAGGTGACGCTGTAGCCCAAGCTGCCCTCAGCAGTCAGAACCCAGGAGTGATAACCATTGCAAATGCAGTTTTTGGTTCCGACCCTCCCATCAATCCTGAGGTTCTAGCTAAGGCCTTCCAAGTGGACAACAAGGCGGTTGAGTATCTCCAGAAACAGTTCTGGTACGACAACAATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

228

Amino Acids

24.49

Weight (kDa)

5.24

Isoelectric Point (pI)

21.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
AciI CCGC 1 cut(s) 638
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 1 cut(s) 668
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 3 cut(s) 200, 234, 442
AjnI CCWGG 2 cut(s) 291, 544
AleI CACNNNNGTG 2 cut(s) 345, 434
AluBI AGCT 3 cut(s) 163, 524, 611
AluI AGCT 3 cut(s) 163, 524, 611
AoxI GGCC 3 cut(s) 319, 472, 615
ApeKI GCWGC 1 cut(s) 524
ApoI RAATTY 1 cut(s) 143
Asp700I GAANNNNTTC 2 cut(s) 9, 659
AspS9I GGNCC 2 cut(s) 154, 256
AsuHPI GGTGA 2 cut(s) 332, 518
AvaII GGWCC 2 cut(s) 154, 256
AxyI CCTNAGG 1 cut(s) 600
BauI CACGAG 1 cut(s) 345
BbvCI CCTCAGC 1 cut(s) 530
BbvI GCAGC 1 cut(s) 511
BccI CCATC 2 cut(s) 62, 599
BceAI ACGGC 1 cut(s) 230
BciT130I CCWGG 2 cut(s) 293, 546
BfaI CTAG 2 cut(s) 78, 608
BfmI CTRYAG 1 cut(s) 513
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 1 cut(s) 525
BlsI GCNGC 1 cut(s) 526
Bme1390I CCNGG 2 cut(s) 293, 546
Bme18I GGWCC 2 cut(s) 154, 256
BmgT120I GGNCC 2 cut(s) 154, 256
BmiI GGNNCC 2 cut(s) 156, 580
BmrFI CCNGG 2 cut(s) 293, 546
BpmI CTGGAG 1 cut(s) 635
Bpu10I CCTNAGC 2 cut(s) 530, 612
BsaBI GATNNNNATC 1 cut(s) 417
BsaJI CCNNGG 2 cut(s) 291, 544
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse21I CCTNAGG 1 cut(s) 600
Bse3DI GCAATG 1 cut(s) 558
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 2 cut(s) 293, 546
BseDI CCNNGG 2 cut(s) 291, 544
BseGI GGATG 1 cut(s) 54
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 558
BseMII CTCAG 2 cut(s) 544, 591
BseRI GAGGAG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 511
BshFI GGCC 3 cut(s) 321, 474, 617
BslI CCNNNNNNNGG 1 cut(s) 88
BsmI GAATGC 1 cut(s) 412
BsnI GGCC 3 cut(s) 321, 474, 617
BspACI CCGC 1 cut(s) 638
BspANI GGCC 3 cut(s) 321, 474, 617
BspCNI CTCAG 2 cut(s) 543, 592
BspLI GGNNCC 2 cut(s) 156, 580
BsrDI GCAATG 1 cut(s) 558
BssECI CCNNGG 2 cut(s) 291, 544
BssSI CACGAG 1 cut(s) 345
Bst2BI CACGAG 1 cut(s) 345
Bst2UI CCWGG 2 cut(s) 293, 546
Bst4CI ACNGT 2 cut(s) 238, 660
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 165, 298
BstDEI CTNAG 3 cut(s) 530, 600, 612
BstF5I GGATG 1 cut(s) 54
BstMWI GCNNNNNNNGC 2 cut(s) 41, 524
BstNI CCWGG 2 cut(s) 293, 546
BstSCI CCNGG 2 cut(s) 291, 544
BstSFI CTRYAG 1 cut(s) 513
BstV1I GCAGC 1 cut(s) 511
Bsu36I CCTNAGG 1 cut(s) 600
BsuRI GGCC 3 cut(s) 321, 474, 617
BtsCI GGATG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 2 cut(s) 165, 298
Cfr13I GGNCC 2 cut(s) 154, 256
CseI GACGC 1 cut(s) 518
Csp6I GTAC 1 cut(s) 667
CviQI GTAC 1 cut(s) 667
DdeI CTNAG 3 cut(s) 530, 600, 612
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco147I AGGCCT 1 cut(s) 617
Eco47I GGWCC 2 cut(s) 154, 256
Eco57I CTGAAG 1 cut(s) 71
Eco81I CCTNAGG 1 cut(s) 600
EcoO109I RGGNCCY 1 cut(s) 154
EcoRII CCWGG 2 cut(s) 291, 544
FaiI YATR 6 cut(s) 23, 38, 287, 302, 336, 387
Fnu4HI GCNGC 1 cut(s) 525
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 525
FspBI CTAG 2 cut(s) 78, 608
GluI GCNGC 1 cut(s) 525
GsuI CTGGAG 1 cut(s) 635
HaeIII GGCC 3 cut(s) 321, 474, 617
HgaI GACGC 1 cut(s) 518
HindIII AAGCTT 1 cut(s) 161
HphI GGTGA 2 cut(s) 332, 518
Hpy166II GTNNAC 2 cut(s) 256, 628
Hpy188I TCNGA 3 cut(s) 73, 540, 583
Hpy188III TCNNGA 3 cut(s) 89, 599, 652
Hpy8I GTNNAC 2 cut(s) 256, 628
HpyAV CCTTC 3 cut(s) 368, 497, 628
HpyCH4III ACNGT 2 cut(s) 238, 660
HpyCH4V TGCA 7 cut(s) 50, 150, 173, 206, 311, 563, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 524
HpyF3I CTNAG 3 cut(s) 530, 600, 612
Lsp1109I GCAGC 1 cut(s) 511
MaeI CTAG 2 cut(s) 78, 608
MaeIII GTNAC 3 cut(s) 238, 397, 506
MboII GAAGA 2 cut(s) 77, 175
MfeI CAATTG 1 cut(s) 468
MluCI AATT 4 cut(s) 143, 201, 468, 679
MmeI TCCRAC 2 cut(s) 511, 606
MnlI CCTC 9 cut(s) 79, 93, 339, 342, 354, 485, 539, 595, 597
MroXI GAANNNNTTC 2 cut(s) 9, 659
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 2 cut(s) 345, 434
MspR9I CCNGG 2 cut(s) 293, 546
MunI CAATTG 1 cut(s) 468
Mva1269I GAATGC 1 cut(s) 412
MvaI CCWGG 2 cut(s) 293, 546
MwoI GCNNNNNNNGC 2 cut(s) 41, 524
NlaIV GGNNCC 2 cut(s) 156, 580
NmuCI GTSAC 3 cut(s) 238, 397, 506
OliI CACNNNNGTG 2 cut(s) 345, 434
PceI AGGCCT 1 cut(s) 617
PctI GAATGC 1 cut(s) 412
PdmI GAANNNNTTC 2 cut(s) 9, 659
PkrI GCNGC 1 cut(s) 526
PpuMI RGGWCCY 1 cut(s) 154
PsiI TTATAA 1 cut(s) 23
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 2 cut(s) 291, 544
PspGI CCWGG 2 cut(s) 291, 544
PspN4I GGNNCC 2 cut(s) 156, 580
PspPI GGNCC 2 cut(s) 154, 256
PspPPI RGGWCCY 1 cut(s) 154
RsaI GTAC 1 cut(s) 668
RsaNI GTAC 1 cut(s) 667
RseI CAYNNNNRTG 2 cut(s) 345, 434
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 525
Sau96I GGNCC 2 cut(s) 154, 256
ScrFI CCNGG 2 cut(s) 293, 546
SetI ASST 6 cut(s) 10, 165, 508, 526, 606, 613
SfcI CTRYAG 1 cut(s) 513
SinI GGWCC 2 cut(s) 154, 256
SmiMI CAYNNNNRTG 2 cut(s) 345, 434
Sse9I AATT 4 cut(s) 143, 201, 468, 679
SseBI AGGCCT 1 cut(s) 617
SsiI CCGC 1 cut(s) 638
SspMI CTAG 2 cut(s) 78, 608
StuI AGGCCT 1 cut(s) 617
StyD4I CCNGG 2 cut(s) 291, 544
TaaI ACNGT 2 cut(s) 238, 660
TaqI TCGA 1 cut(s) 404
TasI AATT 4 cut(s) 143, 201, 468, 679
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 243
TseFI GTSAC 3 cut(s) 238, 397, 506
TseI GCWGC 1 cut(s) 524
Tsp45I GTSAC 3 cut(s) 238, 397, 506
TspRI CASTG 1 cut(s) 243
VpaK11BI GGWCC 2 cut(s) 154, 256
XapI RAATTY 1 cut(s) 143
XmnI GAANNNNTTC 2 cut(s) 9, 659
XspI CTAG 2 cut(s) 78, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.