RLG00000028234

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000366
Physical Location & Seq
Reverse (-)
20380494 .. 20381319
826 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028234

Sequence Viewer

Length: 702 bp
ATGATGATGAAAGGTGCTCATTTCCCTACAGCTGCTGCTTTTGCCCTATTGGCATTGGCAACCTTCTACCTTGTATCTGCCTCTGATCCTAGTCCTCTCCAAGATTTCTGTGTAGCACTTAACACCACAGAAACTGTTGCTTCTGCCGTGTTTGTGAATGGAAAATTCTGCAGGGACCCAAAGCTTGCAACAGCAGATGATTTCTTCTTTCCCGGGCTCCGGATTCCTGGAAACACATCAAATCCGCTAGGTTCCAAAGTCACCCCAGCTAATGTGGAGCAAATAGCAGGGCTGAACACTCTTGGGATATCCCTGGCTCGCATAGACTTTGCACCAAATGGCGGACTAAACCCTCCTCACACCCACCCTCGAGCCACGGAAGTCCTTATGGTCATGGAAGGCACTCTCTACGTGGGCTTCGTCACATCCGACCCTGACAACCGCCTCTTCACCAAAGTGTTGTACAAGGGAGATGTGTTTGTCTTCCCAGTTGGTCTCATTCACTTCCAGTTCAACATCGGAAAGGATAAAGCCGTAGCCATTGCCGCTCTTAGCAGCCAGAATCCAGGTGTCATCATCATAGCCAATGCAGTGTTCGGCTCCAACCCTCCAATCAACCCTGATGTTCTCACCAAGGCCTTCCAAGTTGACAACAATGTCGTTCAGTATCTCCAGAAACAGTTCTGGTATGACAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

234

Amino Acids

25.1

Weight (kDa)

6.04

Isoelectric Point (pI)

19.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 73 - 222 4.1e-54 Cupin
Cupin_2 PF07883 108 - 181 3.2e-07 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 656
AccBSI CCGCTC 1 cut(s) 548
AccIII TCCGGA 1 cut(s) 219
AciI CCGC 4 cut(s) 245, 342, 442, 546
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 1 cut(s) 164
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 2 cut(s) 219, 341
AgsI TTSAA 1 cut(s) 514
AjnI CCWGG 3 cut(s) 226, 312, 565
AjuI GAANNNNNNNTTGG 2 cut(s) 578, 610
AleI CACNNNNGTG 1 cut(s) 455
AluBI AGCT 3 cut(s) 32, 184, 269
AluI AGCT 3 cut(s) 32, 184, 269
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 500
AlwI GGATC 1 cut(s) 80
AlwNI CAGNNNCTG 2 cut(s) 35, 134
Ama87I CYCGRG 2 cut(s) 212, 369
Aor13HI TCCGGA 1 cut(s) 219
AoxI GGCC 1 cut(s) 636
ApeKI GCWGC 3 cut(s) 32, 35, 555
ApoI RAATTY 1 cut(s) 164
Asp700I GAANNNNTTC 1 cut(s) 680
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 2 cut(s) 213, 214
AsuHPI GGTGA 3 cut(s) 253, 442, 622
AvaI CYCGRG 2 cut(s) 212, 369
AvaII GGWCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 475
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 3 cut(s) 19, 22, 567
BceAI ACGGC 2 cut(s) 131, 518
BciT130I CCWGG 3 cut(s) 228, 314, 567
BcnI CCSGG 2 cut(s) 213, 214
BcoDI GTCTC 1 cut(s) 500
BfaI CTAG 2 cut(s) 90, 248
BfmI CTRYAG 2 cut(s) 27, 169
BglI GCCNNNNNGGC 1 cut(s) 50
BisI GCNGC 4 cut(s) 33, 36, 546, 556
BlsI GCNGC 4 cut(s) 34, 37, 547, 557
Bme1390I CCNGG 5 cut(s) 213, 214, 228, 314, 567
Bme18I GGWCC 1 cut(s) 175
BmeT110I CYCGRG 2 cut(s) 212, 369
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 5 cut(s) 176, 177, 218, 253, 601
BmrFI CCNGG 5 cut(s) 213, 214, 228, 314, 567
BmrI ACTGGG 1 cut(s) 482
BmuI ACTGGG 1 cut(s) 482
BpiI GAAGAC 1 cut(s) 475
BpmI CTGGAG 1 cut(s) 656
BpuMI CCSGG 2 cut(s) 213, 214
BsaAI YACGTR 1 cut(s) 412
BsaI GGTCTC 1 cut(s) 500
BsaJI CCNNGG 4 cut(s) 212, 312, 375, 633
BsaWI WCCGGW 1 cut(s) 219
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 341
Bse1I ACTGG 2 cut(s) 488, 508
Bse3DI GCAATG 1 cut(s) 540
BseAI TCCGGA 1 cut(s) 219
BseBI CCWGG 3 cut(s) 228, 314, 567
BseDI CCNNGG 4 cut(s) 212, 312, 375, 633
BseGI GGATG 1 cut(s) 425
BseLI CCNNNNNNNGG 2 cut(s) 219, 341
BseMI GCAATG 1 cut(s) 540
BseNI ACTGG 2 cut(s) 488, 508
BseRI GAGGAG 1 cut(s) 345
BseXI GCAGC 3 cut(s) 19, 22, 567
BseYI CCCAGC 1 cut(s) 265
BshFI GGCC 1 cut(s) 638
BsiHKAI GWGCWC 1 cut(s) 19
BsiHKCI CYCGRG 2 cut(s) 212, 369
BsiSI CCGG 2 cut(s) 213, 220
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 2 cut(s) 219, 341
BsmAI GTCTC 1 cut(s) 500
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 1 cut(s) 638
Bso31I GGTCTC 1 cut(s) 500
BsoBI CYCGRG 2 cut(s) 212, 369
Bsp1286I GDGCHC 2 cut(s) 19, 219
Bsp13I TCCGGA 1 cut(s) 219
Bsp1407I TGTACA 1 cut(s) 462
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 4 cut(s) 245, 342, 442, 546
BspANI GGCC 1 cut(s) 638
BspEI TCCGGA 1 cut(s) 219
BspLI GGNNCC 5 cut(s) 176, 177, 218, 253, 601
BspMAI CTGCAG 1 cut(s) 173
BspPI GGATC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 500
BsrBI CCGCTC 1 cut(s) 548
BsrDI GCAATG 1 cut(s) 540
BsrGI TGTACA 1 cut(s) 462
BsrI ACTGG 2 cut(s) 488, 508
BssECI CCNNGG 4 cut(s) 212, 312, 375, 633
BssMI GATC 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 633
Bst2UI CCWGG 3 cut(s) 228, 314, 567
Bst4CI ACNGT 2 cut(s) 136, 681
Bst6I CTCTTC 1 cut(s) 452
BstAUI TGTACA 1 cut(s) 462
BstBAI YACGTR 1 cut(s) 412
BstC8I GCNNGC 2 cut(s) 186, 319
BstDEI CTNAG 1 cut(s) 551
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 1 cut(s) 425
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 500
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 3 cut(s) 41, 50, 545
BstNI CCWGG 3 cut(s) 228, 314, 567
BstSCI CCNGG 5 cut(s) 211, 212, 226, 312, 565
BstSFI CTRYAG 2 cut(s) 27, 169
BstV1I GCAGC 3 cut(s) 19, 22, 567
BstV2I GAAGAC 1 cut(s) 475
BsuRI GGCC 1 cut(s) 638
BtgI CCRYGG 1 cut(s) 375
BtsCI GGATG 1 cut(s) 425
BtsI GCAGTG 1 cut(s) 597
BtsIMutI CAGTG 1 cut(s) 597
Cac8I GCNNGC 2 cut(s) 186, 319
CaiI CAGNNNCTG 2 cut(s) 35, 134
Cfr13I GGNCC 1 cut(s) 175
Cfr9I CCCGGG 1 cut(s) 212
Csp6I GTAC 1 cut(s) 463
CviAII CATG 1 cut(s) 394
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 1 cut(s) 551
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
DrdI GACNNNNNNGTC 1 cut(s) 656
DseDI GACNNNNNNGTC 1 cut(s) 656
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
EciI GGCGGA 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 633
Eco147I AGGCCT 1 cut(s) 638
Eco24I GRGCYC 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 500
Eco32I GATATC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 175
Eco88I CYCGRG 2 cut(s) 212, 369
EcoO109I RGGNCCY 1 cut(s) 175
EcoRII CCWGG 3 cut(s) 226, 312, 565
EcoRV GATATC 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 633
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 633
FaeI CATG 1 cut(s) 397
FaiI YATR 5 cut(s) 323, 389, 395, 581, 690
FaqI GGGAC 1 cut(s) 188
FatI CATG 1 cut(s) 393
Fnu4HI GCNGC 4 cut(s) 33, 36, 546, 556
FokI GGATG 1 cut(s) 412
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 4 cut(s) 33, 36, 546, 556
FspBI CTAG 2 cut(s) 90, 248
GluI GCNGC 4 cut(s) 33, 36, 546, 556
GsaI CCCAGC 1 cut(s) 269
GsuI CTGGAG 1 cut(s) 656
HaeIII GGCC 1 cut(s) 638
HapII CCGG 2 cut(s) 213, 220
Hin1II CATG 1 cut(s) 397
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 2 cut(s) 223, 562
HpaII CCGG 2 cut(s) 213, 220
HphI GGTGA 3 cut(s) 253, 442, 622
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 3 cut(s) 85, 430, 521
Hpy188III TCNNGA 2 cut(s) 220, 673
Hpy8I GTNNAC 1 cut(s) 649
HpyAV CCTTC 3 cut(s) 73, 392, 649
HpyCH4III ACNGT 2 cut(s) 136, 681
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 4 cut(s) 171, 188, 332, 590
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 50, 545
HpyF3I CTNAG 1 cut(s) 551
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 1 cut(s) 397
KflI GGGWCCC 1 cut(s) 175
Kpn2I TCCGGA 1 cut(s) 219
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 3 cut(s) 222, 277, 605
Lsp1109I GCAGC 3 cut(s) 19, 22, 567
MaeI CTAG 2 cut(s) 90, 248
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 2 cut(s) 259, 421
MalI GATC 1 cut(s) 87
MbiI CCGCTC 1 cut(s) 548
MboI GATC 1 cut(s) 85
MboII GAAGA 3 cut(s) 196, 439, 475
MhlI GDGCHC 2 cut(s) 19, 219
MluCI AATT 2 cut(s) 164, 697
MmeI TCCRAC 2 cut(s) 453, 627
MnlI CCTC 7 cut(s) 91, 105, 363, 366, 378, 455, 618
MroI TCCGGA 1 cut(s) 219
MroXI GAANNNNTTC 1 cut(s) 680
MseI TTAA 2 cut(s) 120, 700
MslI CAYNNNNRTG 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 2 cut(s) 213, 220
MspR9I CCNGG 5 cut(s) 213, 214, 228, 314, 567
MvaI CCWGG 3 cut(s) 228, 314, 567
MwoI GCNNNNNNNGC 3 cut(s) 41, 50, 545
NciI CCSGG 2 cut(s) 213, 214
NdeII GATC 1 cut(s) 85
NlaIII CATG 1 cut(s) 397
NlaIV GGNNCC 5 cut(s) 176, 177, 218, 253, 601
NmuCI GTSAC 2 cut(s) 259, 421
OliI CACNNNNGTG 1 cut(s) 455
PaeR7I CTCGAG 1 cut(s) 369
PceI AGGCCT 1 cut(s) 638
PcsI WCGNNNNNNNCGW 2 cut(s) 417, 426
PdmI GAANNNNTTC 1 cut(s) 680
PfeI GAWTC 2 cut(s) 223, 562
PfoI TCCNGGA 1 cut(s) 226
PkrI GCNGC 4 cut(s) 34, 37, 547, 557
Ppu21I YACGTR 1 cut(s) 412
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 3 cut(s) 226, 312, 565
PspFI CCCAGC 1 cut(s) 265
PspGI CCWGG 3 cut(s) 226, 312, 565
PspN4I GGNNCC 5 cut(s) 176, 177, 218, 253, 601
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PspXI VCTCGAGB 1 cut(s) 369
PstI CTGCAG 1 cut(s) 173
PstNI CAGNNNCTG 2 cut(s) 35, 134
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
RseI CAYNNNNRTG 1 cut(s) 455
SaqAI TTAA 2 cut(s) 120, 700
SatI GCNGC 4 cut(s) 33, 36, 546, 556
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 175
ScrFI CCNGG 5 cut(s) 213, 214, 228, 314, 567
SduI GDGCHC 2 cut(s) 19, 219
SetI ASST 9 cut(s) 16, 34, 65, 72, 186, 253, 271, 414, 571
SfcI CTRYAG 2 cut(s) 27, 169
Sfr274I CTCGAG 1 cut(s) 369
SinI GGWCC 1 cut(s) 175
SlaI CTCGAG 1 cut(s) 369
SmaI CCCGGG 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 455
SmlI CTYRAG 1 cut(s) 369
SmoI CTYRAG 1 cut(s) 369
Sse9I AATT 2 cut(s) 164, 697
SseBI AGGCCT 1 cut(s) 638
SsiI CCGC 4 cut(s) 245, 342, 442, 546
SspMI CTAG 2 cut(s) 90, 248
StuI AGGCCT 1 cut(s) 638
StyD4I CCNGG 5 cut(s) 211, 212, 226, 312, 565
StyI CCWWGG 1 cut(s) 633
TaaI ACNGT 2 cut(s) 136, 681
TaiI ACGT 1 cut(s) 414
TaqI TCGA 1 cut(s) 370
TasI AATT 2 cut(s) 164, 697
TatI WGTACW 1 cut(s) 462
TauI GCSGC 1 cut(s) 548
TfiI GAWTC 2 cut(s) 223, 562
Tru1I TTAA 2 cut(s) 120, 700
Tru9I TTAA 2 cut(s) 120, 700
TscAI CASTG 1 cut(s) 597
TseFI GTSAC 2 cut(s) 259, 421
TseI GCWGC 3 cut(s) 32, 35, 555
Tsp45I GTSAC 2 cut(s) 259, 421
TspDTI ATGAA 1 cut(s) 23
TspGWI ACGGA 1 cut(s) 392
TspMI CCCGGG 1 cut(s) 212
TspRI CASTG 1 cut(s) 597
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 1 cut(s) 164
XhoI CTCGAG 1 cut(s) 369
XmaI CCCGGG 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 680
XspI CTAG 2 cut(s) 90, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.