Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002235

Physical Location & Seq

Genomic Coordinates Forward (+)

6650901 .. 6651539

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g04950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGATGATCGATCTTATGGAGCTGATTTTAAATGTTGTTTGTCCTGCTTTCGAAAGTACCGTTACTTCAGTTAAAGCAAGAGAAAATCTTATGAGTCTTGACGATATGGTTGCTTTGCTCTTGAGCGCTGATAGTCGTATGGAAGACTATAGCACTACTTTCAGTCCTTTGGATCACACTACTACAGCTTTTTTTGCACCTTATGGCTCCTCTACAAATCATGGTCGTGGAACCACACTTCACCGTGGTAATGGTCGTACGTCCTCATTCCGTCGTGGTGGTTTTCAAGGTTGTGGCTCCTTTCATGGTCACGGTGCTGGTAATCATTTTGTTGGCCGTCGTGGTGGTTCAAATAGTGGTTTGTTTCACGGTGGATCCAGTCGCGGCTTATTTCAGAGTCGAGGAATTCTTCCTACACCTACTGTTGTTTTTCCTCACTTTTCCTATCTTCCCAACCATGTTGCGGTTGCTCCTTCATCTTCTGGATATCGTAACATTGGTTCTTCCTCTAATGGTTGTTACTATTGTGGTCGATCATCGTCATTCTACTACAAACTGTTTCAAGTCTCATTTTTTCGAAGGGCGATATCCGTTTTCACAATCTCATGCTATGATGCCTGCATCTCCTGTAGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

213

Amino Acids

23.07

Weight (kDa)

9.23

Isoelectric Point (pI)

50.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01770
fragaria_vesca	FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830
malus_domestica	MD01G1054400.v1.1 MD10G1234500.v1.1
prunus_persica	Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1
pyrus_communis	pycom01g07960 pycom06g04950 pycom07g13860 pycom07g13870
rosa_chinensis	RchiOBHm_Chr1g0354021 RchiOBHm_Chr1g0354041
rosa_laevigata	RLG00000028232 RLG00000028235
rosa_multiflora	Rmu_sc0004632.1_g000002 Rmu_sc0004632.1_g000004 Rmu_sc0025756.1_g000001 Rmu_sc0031149.1_g000001 Rmu_sc0031810.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301280 Rroxscaffold_4G00301310 Rroxscaffold_4G00301330
rosa_rugosa	Rorug01G0240300 Rorug01G0240500
rosa_samantha	Rh1AG251600 Rh1BG223200 Rh1BG223400 Rh1CG236000 Rh1DG250100 Rh1DG250300
rosa_wichuraiana	Rw1G021940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	384
AciI	CCGC	2 cut(s)	384, 464
AclWI	GGATC	3 cut(s)	180, 369, 382
AcoI	YGGCCR	1 cut(s)	334
AcsI	RAATTY	1 cut(s)	405
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	2 cut(s)	58, 259
AfeI	AGCGCT	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	463
AgsI	TTSAA	3 cut(s)	287, 351, 563
AluBI	AGCT	2 cut(s)	22, 188
AluI	AGCT	2 cut(s)	22, 188
Alw26I	GTCTC	1 cut(s)	571
AlwI	GGATC	3 cut(s)	180, 369, 382
Aor51HI	AGCGCT	1 cut(s)	127
AoxI	GGCC	1 cut(s)	334
ApoI	RAATTY	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	233
AsuII	TTCGAA	2 cut(s)	51, 577
BamHI	GGATCC	1 cut(s)	374
BarI	GAAGNNNNNNTAC	2 cut(s)	49, 81
BbsI	GAAGAC	1 cut(s)	150
BceAI	ACGGC	1 cut(s)	321
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BcoDI	GTCTC	1 cut(s)	571
BfmI	CTRYAG	3 cut(s)	148, 183, 628
BfoI	RGCGCY	1 cut(s)	129
BisI	GCNGC	1 cut(s)	385
BlsI	GCNGC	1 cut(s)	386
BmiI	GGNNCC	4 cut(s)	208, 232, 298, 376
BmsI	GCATC	2 cut(s)	604, 630
BpiI	GAAGAC	1 cut(s)	150
Bpu14I	TTCGAA	2 cut(s)	51, 577
BpuEI	CTTGAG	1 cut(s)	142
Bsa29I	ATCGAT	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	463
Bse1I	ACTGG	1 cut(s)	378
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	463
BseNI	ACTGG	1 cut(s)	378
BseRI	GAGGAG	1 cut(s)	199
Bsh1236I	CGCG	1 cut(s)	384
BshFI	GGCC	1 cut(s)	336
BshVI	ATCGAT	1 cut(s)	9
BsiWI	CGTACG	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	463
BsmAI	GTCTC	1 cut(s)	571
BsnI	GGCC	1 cut(s)	336
Bsp119I	TTCGAA	2 cut(s)	51, 577
Bsp143I	GATC	5 cut(s)	6, 10, 172, 374, 533
BspACI	CCGC	2 cut(s)	384, 464
BspANI	GGCC	1 cut(s)	336
BspDI	ATCGAT	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	384
BspLI	GGNNCC	4 cut(s)	208, 232, 298, 376
BspPI	GGATC	3 cut(s)	180, 369, 382
BspT104I	TTCGAA	2 cut(s)	51, 577
BsrI	ACTGG	1 cut(s)	378
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	5 cut(s)	6, 10, 172, 374, 533
Bst4CI	ACNGT	6 cut(s)	61, 245, 314, 371, 424, 558
BstBI	TTCGAA	2 cut(s)	51, 577
BstC8I	GCNNGC	1 cut(s)	619
BstDSI	CCRYGG	1 cut(s)	244
BstFNI	CGCG	1 cut(s)	384
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	5 cut(s)	9, 13, 175, 377, 536
BstMAI	GTCTC	1 cut(s)	571
BstMBI	GATC	5 cut(s)	6, 10, 172, 374, 533
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstSFI	CTRYAG	3 cut(s)	148, 183, 628
BstUI	CGCG	1 cut(s)	384
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
Bsu15I	ATCGAT	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	336
BsuTUI	ATCGAT	1 cut(s)	9
BtgI	CCRYGG	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	619
CfoI	GCGC	1 cut(s)	128
ClaI	ATCGAT	1 cut(s)	9
Csp6I	GTAC	2 cut(s)	57, 258
CviAII	CATG	4 cut(s)	221, 305, 458, 606
CviJI	RGCY	6 cut(s)	22, 188, 207, 297, 336, 387
CviKI_1	RGCY	6 cut(s)	22, 188, 207, 297, 336, 387
CviQI	GTAC	2 cut(s)	57, 258
DpnI	GATC	5 cut(s)	8, 12, 174, 376, 535
DpnII	GATC	5 cut(s)	6, 10, 172, 374, 533
DraI	TTTAAA	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	334
Eco32I	GATATC	2 cut(s)	488, 588
Eco47III	AGCGCT	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	405
EcoRV	GATATC	2 cut(s)	488, 588
FaeI	CATG	4 cut(s)	224, 308, 461, 609
FatI	CATG	4 cut(s)	220, 304, 457, 605
Fnu4HI	GCNGC	1 cut(s)	385
Fsp4HI	GCNGC	1 cut(s)	385
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	1 cut(s)	385
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	336
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	4 cut(s)	224, 308, 461, 609
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HinfI	GANTC	2 cut(s)	94, 397
HphI	GGTGA	1 cut(s)	233
Hpy188I	TCNGA	1 cut(s)	396
Hpy188III	TCNNGA	3 cut(s)	98, 121, 483
Hpy99I	CGWCG	2 cut(s)	276, 342
HpyAV	CCTTC	2 cut(s)	483, 573
HpyCH4III	ACNGT	6 cut(s)	61, 245, 314, 371, 424, 558
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	2 cut(s)	197, 621
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	4 cut(s)	224, 308, 461, 609
HspAI	GCGC	1 cut(s)	126
Kzo9I	GATC	5 cut(s)	6, 10, 172, 374, 533
LmnI	GCTCC	4 cut(s)	19, 212, 302, 475
LpnPI	CCDG	5 cut(s)	57, 303, 391, 468, 631
LweI	GCATC	2 cut(s)	604, 630
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	4 cut(s)	61, 308, 491, 518
MalI	GATC	5 cut(s)	8, 12, 174, 376, 535
MboI	GATC	5 cut(s)	6, 10, 172, 374, 533
MboII	GAAGA	5 cut(s)	155, 401, 440, 471, 495
MflI	RGATCY	1 cut(s)	374
MluCI	AATT	1 cut(s)	405
MlyI	GAGTC	2 cut(s)	103, 406
MnlI	CCTC	5 cut(s)	220, 274, 395, 444, 517
MseI	TTAA	2 cut(s)	29, 72
MslI	CAYNNNNRTG	1 cut(s)	225
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	5 cut(s)	6, 10, 172, 374, 533
NlaIII	CATG	4 cut(s)	224, 308, 461, 609
NlaIV	GGNNCC	4 cut(s)	208, 232, 298, 376
NmuCI	GTSAC	1 cut(s)	308
NspV	TTCGAA	2 cut(s)	51, 577
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
Pfl23II	CGTACG	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	386
PleI	GAGTC	2 cut(s)	102, 405
PpsI	GAGTC	2 cut(s)	102, 405
PspLI	CGTACG	1 cut(s)	257
PspN4I	GGNNCC	4 cut(s)	208, 232, 298, 376
PsrI	GAACNNNNNNTAC	2 cut(s)	484, 516
PsuI	RGATCY	1 cut(s)	374
RsaI	GTAC	2 cut(s)	58, 259
RsaNI	GTAC	2 cut(s)	57, 258
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	29, 72
SatI	GCNGC	1 cut(s)	385
Sau3AI	GATC	5 cut(s)	6, 10, 172, 374, 533
SchI	GAGTC	2 cut(s)	103, 406
SetI	ASST	6 cut(s)	24, 190, 202, 263, 292, 421
SfaNI	GCATC	2 cut(s)	604, 630
SfcI	CTRYAG	3 cut(s)	148, 183, 628
SfuI	TTCGAA	2 cut(s)	51, 577
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	1 cut(s)	405
SsiI	CCGC	2 cut(s)	384, 464
TaaI	ACNGT	6 cut(s)	61, 245, 314, 371, 424, 558
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	5 cut(s)	9, 51, 400, 532, 577
TasI	AATT	1 cut(s)	405
TauI	GCSGC	1 cut(s)	387
Tru1I	TTAA	2 cut(s)	29, 72
Tru9I	TTAA	2 cut(s)	29, 72
TseFI	GTSAC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	2 cut(s)	293, 465
TspGWI	ACGGA	2 cut(s)	260, 580
XapI	RAATTY	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.