Rh1DG250100

Acyclic terpene utilisation family protein AtuA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002235
Physical Location & Seq
Forward (+)
46377070 .. 46384367
7298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG250100.1

Sequence Viewer

Length: 1428 bp
ATGGAAATCCATGAAGGAGGTGTAATTCGCAATTGTGTGATCAAGCTGAGGGAGGATTGTAAAAAGAGAAGGGACAAGGTCTATGTTGACTGTGGTGCTGGTTTTGGAGGTGACAGGCCTTTGGCAGCTCTTAAGTTGCTGCAGAGAGTCAAAAAGCTCAACTATATCGTGCTTGAATGCCTCACAGAGCGCACCCTTGCTGAACGGTATCAAGTTATGGTTTCGGGTGGTGATGGTTATGATTCAAGGATTTCTGACTGGATGCGATTGCTCCTTCCTTTGGCTGTTGAGAGAGGAACTTGCATAATCACCAACATGGGTGCAATGGATCCACCGGGGGCACAGGAAAAGGTTATAGAAATAGCCTGCAGCTTGGGGCTTAGTGTTTCTGTTGCTGTGGCTCATGAGATTTCTCTCACAAATATAGGTTCAGCCTCTCATGAGAAGTCATTTTTGGTGGAAGGTGGTATTAGCACCTATCTGGGAGCGGCTCCGATTGTTGAATGTTTGGAAAAGTATCAGCCAAATGTAATTATAACTTCACGGGTTGCAGATGCTGCCTTATTTTTAGCACCAATGATTTATGAACTTGGTTGGAACTGGGACAACTTGGAGCAGCTAGCACAGGGGTCTCTGGCAGGCCATCTTCTAGAGTGTGGTTGTCAACTCACGGGGGGATACTTCATGCACCCAGGGGACAAGTCTCGAGACATGTCTTCCTCTCAGCTCCTTGACTTGTCACTTCCTTATGCTGAAATTAGCTCTGATGGAAAAGTATGTGTAGCGAAGGCAGAGGGTAGTGGTGGGGTTTTGAACTTCAGTACATGTGCTCAACAACTTCTTTATGAGATCGGGAATCCGGGTGCTTATGTAACTCCTGATGTGATAATTGATTTCCGGGATGTTTCATTCTACCCATTATCAAGTTGTAAGGTCCTCTGTGCTGGAGCAAAACCATCTGCAGTATCAGTTCCTGATAAACTCCTGCGGTTGGTTCCAAAGGACTCTGGTTGGAAAGGATGGGGCGAAATATCTTATGGAGGATTTGAATGTGTTAAACGTGCCAAGATTGCTGAATTTCTGTACGACATCGAAGAAGTACAGCAACACTGCAACCACACATTTTCGCAGCAGGAGATAGTTTCTCTGTACGAGAGGTTCTGTCAGCTCGATCATAGTGGCCGAGGTTTCATCTTCGTCGACGAGTTTTTGTCCGTACCGGAATTCGCACCCAATCCTCTCTCTCAGTTTTGGCTGGGTGGACGTAGATACTGGGGGAGAGGGATTGGAGCAAGACCACACTTGCTCTTAGGAGATGCTTCTGTATCATCAACGCCCAATTTCCTGTTCTCATCAGAGAGATTTGATCAAACAACAAAGCTACTTAGTTTTGGGGTGAATTCAGAAAGATATTCGAGGGAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AtuA

Protein Analysis

475

Amino Acids

52.25

Weight (kDa)

5.52

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AtuA PF07287 28 - 360 7.7e-87 Acyclic terpene utilisation family protein AtuA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 536
AccBSI CCGCTC 1 cut(s) 488
AccI GTMKAC 1 cut(s) 1200
AciI CCGC 2 cut(s) 488, 988
AclWI GGATC 2 cut(s) 323, 336
AcoI YGGCCR 1 cut(s) 1180
AcsI RAATTY 3 cut(s) 1076, 1223, 1399
AcuI CTGAAG 1 cut(s) 802
AfaI GTAC 5 cut(s) 823, 1085, 1101, 1151, 1218
AfiI CCNNNNNNNGG 2 cut(s) 280, 991
AflII CTTAAG 1 cut(s) 131
AflIII ACRYGT 2 cut(s) 711, 824
AgsI TTSAA 5 cut(s) 176, 246, 503, 814, 1049
AjnI CCWGG 1 cut(s) 691
AjuI GAANNNNNNNTTGG 4 cut(s) 437, 469, 1331, 1363
AluBI AGCT 9 cut(s) 46, 128, 157, 372, 619, 727, 762, 1168, 1381
AluI AGCT 9 cut(s) 46, 128, 157, 372, 619, 727, 762, 1168, 1381
Alw21I GWGCWC 1 cut(s) 832
Alw26I GTCTC 3 cut(s) 636, 702, 708
AlwI GGATC 2 cut(s) 323, 336
AlwNI CAGNNNCTG 2 cut(s) 557, 974
Ama87I CYCGRG 1 cut(s) 705
AoxI GGCC 3 cut(s) 116, 640, 1180
ApeKI GCWGC 6 cut(s) 125, 139, 369, 557, 616, 1129
ApoI RAATTY 3 cut(s) 1076, 1223, 1399
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 934
AsuC2I CCSGG 3 cut(s) 336, 861, 899
AsuHPI GGTGA 4 cut(s) 122, 242, 301, 1408
AsuNHI GCTAGC 1 cut(s) 619
AvaI CYCGRG 1 cut(s) 705
AvaII GGWCC 1 cut(s) 934
BaeGI GKGCMC 1 cut(s) 343
BamHI GGATCC 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 708
Bbv12I GWGCWC 1 cut(s) 832
BbvCI CCTCAGC 1 cut(s) 47
BbvI GCAGC 6 cut(s) 126, 137, 381, 544, 628, 1141
BccI CCATC 5 cut(s) 227, 651, 761, 964, 1014
BciT130I CCWGG 1 cut(s) 693
BciVI GTATCC 1 cut(s) 671
BclI TGATCA 2 cut(s) 39, 1366
BcnI CCSGG 3 cut(s) 336, 861, 899
BcoDI GTCTC 3 cut(s) 636, 702, 708
BfaI CTAG 2 cut(s) 620, 650
BfmI CTRYAG 3 cut(s) 140, 367, 960
BfrI CTTAAG 1 cut(s) 131
BfuI GTATCC 1 cut(s) 671
BisI GCNGC 7 cut(s) 126, 140, 370, 489, 558, 617, 1130
BlsI GCNGC 7 cut(s) 127, 141, 371, 490, 559, 618, 1131
Bme1390I CCNGG 4 cut(s) 336, 693, 861, 899
Bme18I GGWCC 1 cut(s) 934
BmeT110I CYCGRG 1 cut(s) 705
BmgT120I GGNCC 1 cut(s) 934
BmiI GGNNCC 3 cut(s) 330, 492, 996
BmrFI CCNGG 4 cut(s) 336, 693, 861, 899
BmrI ACTGGG 2 cut(s) 610, 1282
BmsI GCATC 3 cut(s) 252, 544, 1306
BmtI GCTAGC 1 cut(s) 623
BmuI ACTGGG 2 cut(s) 610, 1282
BpiI GAAGAC 1 cut(s) 708
BpmI CTGGAG 1 cut(s) 966
Bpu10I CCTNAGC 1 cut(s) 47
BpuMI CCSGG 3 cut(s) 336, 861, 899
BsaI GGTCTC 1 cut(s) 636
BsaJI CCNNGG 4 cut(s) 335, 691, 692, 1183
BsaWI WCCGGW 1 cut(s) 1219
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 991
Bse1I ACTGG 3 cut(s) 263, 605, 1277
Bse3DI GCAATG 1 cut(s) 330
BseBI CCWGG 1 cut(s) 693
BseDI CCNNGG 4 cut(s) 335, 691, 692, 1183
BseGI GGATG 3 cut(s) 267, 907, 1025
BseLI CCNNNNNNNGG 2 cut(s) 280, 991
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 3 cut(s) 38, 737, 1259
BseNI ACTGG 3 cut(s) 263, 605, 1277
BseSI GKGCMC 1 cut(s) 343
BseXI GCAGC 6 cut(s) 126, 137, 381, 544, 628, 1141
BseYI CCCAGC 1 cut(s) 1255
BshFI GGCC 3 cut(s) 118, 642, 1182
BsiHKAI GWGCWC 1 cut(s) 832
BsiHKCI CYCGRG 1 cut(s) 705
BsiSI CCGG 4 cut(s) 335, 860, 898, 1220
BslFI GGGAC 3 cut(s) 86, 617, 710
BslI CCNNNNNNNGG 2 cut(s) 280, 991
BsmAI GTCTC 3 cut(s) 636, 702, 708
BsmFI GGGAC 3 cut(s) 86, 617, 710
BsmI GAATGC 1 cut(s) 182
BsnI GGCC 3 cut(s) 118, 642, 1182
Bso31I GGTCTC 1 cut(s) 636
BsoBI CYCGRG 1 cut(s) 705
Bsp1286I GDGCHC 2 cut(s) 343, 832
Bsp143I GATC 5 cut(s) 39, 328, 849, 1171, 1366
BspACI CCGC 2 cut(s) 488, 988
BspANI GGCC 3 cut(s) 118, 642, 1182
BspCNI CTCAG 3 cut(s) 39, 736, 1258
BspHI TCATGA 2 cut(s) 403, 439
BspLI GGNNCC 3 cut(s) 330, 492, 996
BspMAI CTGCAG 3 cut(s) 144, 371, 964
BspOI GCTAGC 1 cut(s) 623
BspPI GGATC 2 cut(s) 323, 336
BspTI CTTAAG 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 636
BsrBI CCGCTC 1 cut(s) 488
BsrDI GCAATG 1 cut(s) 330
BsrI ACTGG 3 cut(s) 263, 605, 1277
BssECI CCNNGG 4 cut(s) 335, 691, 692, 1183
BssMI GATC 5 cut(s) 39, 328, 849, 1171, 1366
Bst2UI CCWGG 1 cut(s) 693
Bst4CI ACNGT 2 cut(s) 92, 207
BstAFI CTTAAG 1 cut(s) 131
BstAPI GCANNNNNTGC 1 cut(s) 557
BstC8I GCNNGC 3 cut(s) 367, 621, 640
BstDEI CTNAG 6 cut(s) 47, 380, 723, 1245, 1309, 1385
BstF5I GGATG 3 cut(s) 267, 907, 1025
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 5 cut(s) 42, 331, 852, 1174, 1369
BstMAI GTCTC 3 cut(s) 636, 702, 708
BstMBI GATC 5 cut(s) 39, 328, 849, 1171, 1366
BstMWI GCNNNNNNNGC 2 cut(s) 557, 1070
BstNI CCWGG 1 cut(s) 693
BstNSI RCATGY 2 cut(s) 715, 828
BstSCI CCNGG 4 cut(s) 334, 691, 859, 897
BstSFI CTRYAG 3 cut(s) 140, 367, 960
BstSLI GKGCMC 1 cut(s) 343
BstV1I GCAGC 6 cut(s) 126, 137, 381, 544, 628, 1141
BstV2I GAAGAC 1 cut(s) 708
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BsuI GTATCC 1 cut(s) 671
BsuRI GGCC 3 cut(s) 118, 642, 1182
BtsCI GGATG 3 cut(s) 267, 907, 1025
BtsI GCAGTG 1 cut(s) 1108
BtsIMutI CAGTG 1 cut(s) 1108
Cac8I GCNNGC 3 cut(s) 367, 621, 640
CaiI CAGNNNCTG 2 cut(s) 557, 974
CciI TCATGA 2 cut(s) 403, 439
CfoI GCGC 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 934
Csp6I GTAC 5 cut(s) 822, 1084, 1100, 1150, 1217
CviAII CATG 7 cut(s) 11, 316, 404, 440, 685, 712, 825
CviQI GTAC 5 cut(s) 822, 1084, 1100, 1150, 1217
DdeI CTNAG 6 cut(s) 47, 380, 723, 1245, 1309, 1385
DpnI GATC 5 cut(s) 41, 330, 851, 1173, 1368
DpnII GATC 5 cut(s) 39, 328, 849, 1171, 1366
EaeI YGGCCR 1 cut(s) 1180
Eco147I AGGCCT 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 636
Eco47I GGWCC 1 cut(s) 934
Eco57I CTGAAG 1 cut(s) 802
Eco88I CYCGRG 1 cut(s) 705
EcoO109I RGGNCCY 1 cut(s) 934
EcoRI GAATTC 2 cut(s) 1223, 1399
EcoRII CCWGG 1 cut(s) 691
FaeI CATG 7 cut(s) 14, 319, 407, 443, 688, 715, 828
FaqI GGGAC 3 cut(s) 86, 617, 710
FatI CATG 7 cut(s) 10, 315, 403, 439, 684, 711, 824
FbaI TGATCA 2 cut(s) 39, 1366
FblI GTMKAC 1 cut(s) 1200
Fnu4HI GCNGC 7 cut(s) 126, 140, 370, 489, 558, 617, 1130
FokI GGATG 3 cut(s) 274, 914, 1032
Fsp4HI GCNGC 7 cut(s) 126, 140, 370, 489, 558, 617, 1130
FspBI CTAG 2 cut(s) 620, 650
GlaI GCGC 1 cut(s) 191
GluI GCNGC 7 cut(s) 126, 140, 370, 489, 558, 617, 1130
GsaI CCCAGC 1 cut(s) 1259
GsuI CTGGAG 1 cut(s) 966
HaeIII GGCC 3 cut(s) 118, 642, 1182
HapII CCGG 4 cut(s) 335, 860, 898, 1220
HhaI GCGC 1 cut(s) 192
Hin1II CATG 7 cut(s) 14, 319, 407, 443, 688, 715, 828
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HincII GTYRAC 3 cut(s) 88, 665, 1201
HindII GTYRAC 3 cut(s) 88, 665, 1201
HinfI GANTC 4 cut(s) 147, 242, 856, 1004
HpaII CCGG 4 cut(s) 335, 860, 898, 1220
HphI GGTGA 4 cut(s) 122, 242, 301, 1408
Hpy166II GTNNAC 4 cut(s) 88, 665, 1201, 1262
Hpy188I TCNGA 5 cut(s) 256, 495, 766, 1357, 1405
Hpy188III TCNNGA 8 cut(s) 404, 440, 650, 705, 707, 853, 878, 974
Hpy8I GTNNAC 4 cut(s) 88, 665, 1201, 1262
Hpy99I CGWCG 2 cut(s) 1202, 1205
HpyAV CCTTC 5 cut(s) 8, 63, 284, 455, 781
HpyCH4III ACNGT 2 cut(s) 92, 207
HpyCH4IV ACGT 2 cut(s) 1060, 1264
HpyCH4V TGCA 8 cut(s) 142, 303, 323, 369, 551, 688, 962, 1113
HpyF10VI GCNNNNNNNGC 2 cut(s) 557, 1070
HpyF3I CTNAG 6 cut(s) 47, 380, 723, 1245, 1309, 1385
HpySE526I ACGT 2 cut(s) 1060, 1264
Hsp92II CATG 7 cut(s) 14, 319, 407, 443, 688, 715, 828
HspAI GCGC 1 cut(s) 190
Ksp22I TGATCA 2 cut(s) 39, 1366
Kzo9I GATC 5 cut(s) 39, 328, 849, 1171, 1366
LmnI GCTCC 7 cut(s) 276, 485, 496, 613, 732, 947, 1289
Lsp1109I GCAGC 6 cut(s) 126, 137, 381, 544, 628, 1141
LweI GCATC 3 cut(s) 252, 544, 1306
MaeI CTAG 2 cut(s) 620, 650
MaeII ACGT 2 cut(s) 1060, 1264
MaeIII GTNAC 3 cut(s) 110, 738, 871
MalI GATC 5 cut(s) 41, 330, 851, 1173, 1368
MbiI CCGCTC 1 cut(s) 488
MboI GATC 5 cut(s) 39, 328, 849, 1171, 1366
MboII GAAGA 4 cut(s) 638, 708, 1106, 1186
MfeI CAATTG 1 cut(s) 31
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 2 cut(s) 343, 832
MluCI AATT 9 cut(s) 24, 31, 531, 756, 888, 1076, 1223, 1339, 1399
MlyI GAGTC 2 cut(s) 156, 998
MmeI TCCRAC 2 cut(s) 575, 992
MseI TTAA 2 cut(s) 132, 1056
MslI CAYNNNNRTG 1 cut(s) 314
MspCI CTTAAG 1 cut(s) 131
MspI CCGG 4 cut(s) 335, 860, 898, 1220
MspR9I CCNGG 4 cut(s) 336, 693, 861, 899
MunI CAATTG 1 cut(s) 31
Mva1269I GAATGC 1 cut(s) 182
MvaI CCWGG 1 cut(s) 693
MwoI GCNNNNNNNGC 2 cut(s) 557, 1070
NciI CCSGG 3 cut(s) 336, 861, 899
NdeII GATC 5 cut(s) 39, 328, 849, 1171, 1366
NheI GCTAGC 1 cut(s) 619
NlaIII CATG 7 cut(s) 14, 319, 407, 443, 688, 715, 828
NlaIV GGNNCC 3 cut(s) 330, 492, 996
NmeAIII GCCGAG 1 cut(s) 1208
NmuCI GTSAC 2 cut(s) 110, 738
NspI RCATGY 2 cut(s) 715, 828
PaeR7I CTCGAG 1 cut(s) 705
PagI TCATGA 2 cut(s) 403, 439
PasI CCCWGGG 1 cut(s) 692
PceI AGGCCT 1 cut(s) 118
PciI ACATGT 2 cut(s) 711, 824
PctI GAATGC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 242, 856
PflFI GACNNNGTC 1 cut(s) 77
PfoI TCCNGGA 1 cut(s) 897
PkrI GCNGC 7 cut(s) 127, 141, 371, 490, 559, 618, 1131
PleI GAGTC 2 cut(s) 155, 998
PpsI GAGTC 2 cut(s) 155, 998
PpuMI RGGWCCY 1 cut(s) 934
PscI ACATGT 2 cut(s) 711, 824
PsiI TTATAA 1 cut(s) 536
Psp5II RGGWCCY 1 cut(s) 934
Psp6I CCWGG 1 cut(s) 691
PspFI CCCAGC 1 cut(s) 1255
PspGI CCWGG 1 cut(s) 691
PspN4I GGNNCC 3 cut(s) 330, 492, 996
PspPI GGNCC 1 cut(s) 934
PspPPI RGGWCCY 1 cut(s) 934
PsrI GAACNNNNNNTAC 2 cut(s) 1142, 1174
PstI CTGCAG 3 cut(s) 144, 371, 964
PstNI CAGNNNCTG 2 cut(s) 557, 974
PsuI RGATCY 1 cut(s) 328
PsyI GACNNNGTC 1 cut(s) 77
RsaI GTAC 5 cut(s) 823, 1085, 1101, 1151, 1218
RsaNI GTAC 5 cut(s) 822, 1084, 1100, 1150, 1217
RseI CAYNNNNRTG 1 cut(s) 314
SalI GTCGAC 1 cut(s) 1199
SaqAI TTAA 2 cut(s) 132, 1056
SatI GCNGC 7 cut(s) 126, 140, 370, 489, 558, 617, 1130
Sau3AI GATC 5 cut(s) 39, 328, 849, 1171, 1366
Sau96I GGNCC 1 cut(s) 934
SchI GAGTC 2 cut(s) 156, 998
ScrFI CCNGG 4 cut(s) 336, 693, 861, 899
SduI GDGCHC 2 cut(s) 343, 832
SfaNI GCATC 3 cut(s) 252, 544, 1306
SfcI CTRYAG 3 cut(s) 140, 367, 960
Sfr274I CTCGAG 1 cut(s) 705
SgrDI CGTCGACG 1 cut(s) 1199
SinI GGWCC 1 cut(s) 934
SlaI CTCGAG 1 cut(s) 705
SmiMI CAYNNNNRTG 1 cut(s) 314
SmlI CTYRAG 2 cut(s) 131, 705
SmoI CTYRAG 2 cut(s) 131, 705
Sse9I AATT 9 cut(s) 24, 31, 531, 756, 888, 1076, 1223, 1339, 1399
SseBI AGGCCT 1 cut(s) 118
SsiI CCGC 2 cut(s) 488, 988
SspMI CTAG 2 cut(s) 620, 650
StuI AGGCCT 1 cut(s) 118
StyD4I CCNGG 4 cut(s) 334, 691, 859, 897
TaaI ACNGT 2 cut(s) 92, 207
TaiI ACGT 2 cut(s) 1063, 1267
TaqI TCGA 5 cut(s) 706, 1092, 1170, 1200, 1415
TasI AATT 9 cut(s) 24, 31, 531, 756, 888, 1076, 1223, 1339, 1399
TatI WGTACW 2 cut(s) 821, 1099
TauI GCSGC 1 cut(s) 491
TfiI GAWTC 2 cut(s) 242, 856
Tru1I TTAA 2 cut(s) 132, 1056
Tru9I TTAA 2 cut(s) 132, 1056
TscAI CASTG 1 cut(s) 1115
TseFI GTSAC 2 cut(s) 110, 738
TseI GCWGC 6 cut(s) 125, 139, 369, 557, 616, 1129
Tsp45I GTSAC 2 cut(s) 110, 738
TspDTI ATGAA 5 cut(s) 27, 600, 673, 897, 1180
TspGWI ACGGA 1 cut(s) 1204
TspRI CASTG 1 cut(s) 1115
Tth111I GACNNNGTC 1 cut(s) 77
Vha464I CTTAAG 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 934
XapI RAATTY 3 cut(s) 1076, 1223, 1399
XbaI TCTAGA 1 cut(s) 649
XceI RCATGY 2 cut(s) 715, 828
XhoI CTCGAG 1 cut(s) 705
XmiI GTMKAC 1 cut(s) 1200
XspI CTAG 2 cut(s) 620, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.