Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002235

Physical Location & Seq

Genomic Coordinates Reverse (-)

15774789 .. 15776493

Gene Structure 1705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g13870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGTCGTACATCCCTTTGTTGGCTGCCGCTGTGGTTCAAATGGCGGTTTGTTTCATGGTGGATTCGGCAGTGGCTCGTTTCAGAATCGAGAAATTCTTCCTACACCCGCTGCTGCTTTTCCTCACTCTTCCTATCTTCCCAACCATGTTGCGGTAGCTTCTTTATCTTCTGGATATCGTAACATTGGTTCTTCCTCTAATGGTATCTCCTTTCTCCGAAGGCTGATATCCGTCTTCACAATCTCATGCTGTGATGGCTGCCTCTCCTGTGGATCTTGGATTGAAGAAGTAATTCCTGGTGTTAGCAGCCATGTAATCTCATATATAATTGGGCTTGATAGCCTGAAGGCAACCAATCTCAGTGACAATGCTTCATCTCGGATGGTTAGTGACATTAGGTTACGTATGGACAGGTTATTCAAGCTAAAGGAACATGTAGTCCAATTCGTTAGAGAGTTTACTGCTTTGTATACAAATGGACCAGCTGGCGGCGGTGGTATATCAGGTAGCTTTCCGATCAGCTTTTCCATAAATTTTCCTCCCAAATTAGCATTTTGTTGCTTAAGAAAACTGAACTTCGCCTTTCTTGTTTTTGTGGCTCGGCACCTTTTAAATCATATGTTACATGACTATACTGGTTTAATCAATGCAGCACCGGACACAAGAAAGAGATCATCCTTGAAAATTATTTGGTATTCTCTTGTTCTCTCCTCACATCCACAATTCTTAATCCTTTTGGTTTTCTCTTTGACAACCTATTTGATGAACTTGAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AtuA

Protein Analysis

260

Amino Acids

28.34

Weight (kDa)

9.43

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01770
fragaria_vesca	FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830
malus_domestica	MD01G1054400.v1.1 MD10G1234500.v1.1
prunus_persica	Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1
pyrus_communis	pycom01g07960 pycom06g04950 pycom07g13860 pycom07g13870
rosa_chinensis	RchiOBHm_Chr1g0354021 RchiOBHm_Chr1g0354041
rosa_laevigata	RLG00000028232 RLG00000028235
rosa_multiflora	Rmu_sc0004632.1_g000002 Rmu_sc0004632.1_g000004 Rmu_sc0025756.1_g000001 Rmu_sc0031149.1_g000001 Rmu_sc0031810.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301280 Rroxscaffold_4G00301310 Rroxscaffold_4G00301330
rosa_rugosa	Rorug01G0240300 Rorug01G0240500
rosa_samantha	Rh1AG251600 Rh1BG223200 Rh1BG223400 Rh1CG236000 Rh1DG250100 Rh1DG250300
rosa_wichuraiana	Rw1G021940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	603
AccI	GTMKAC	1 cut(s)	470
AciI	CCGC	6 cut(s)	28, 45, 108, 152, 489, 492
AclWI	GGATC	1 cut(s)	280
AcsI	RAATTY	2 cut(s)	93, 532
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	3 cut(s)	20, 151, 488
AflII	CTTAAG	1 cut(s)	562
AflIII	ACRYGT	1 cut(s)	433
AgsI	TTSAA	5 cut(s)	39, 284, 421, 682, 772
AjnI	CCWGG	1 cut(s)	295
AloI	GAACNNNNNNTCC	2 cut(s)	423, 455
AluBI	AGCT	5 cut(s)	158, 424, 485, 510, 522
AluI	AGCT	5 cut(s)	158, 424, 485, 510, 522
AlwI	GGATC	1 cut(s)	280
ApeKI	GCWGC	6 cut(s)	24, 110, 113, 258, 306, 650
ApoI	RAATTY	2 cut(s)	93, 532
ArsI	GACNNNNNNTTYG	2 cut(s)	742, 774
Asp700I	GAANNNNTTC	2 cut(s)	96, 291
AspS9I	GGNCC	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	479
BanI	GGYRCC	1 cut(s)	603
BbsI	GAAGAC	1 cut(s)	226
BbvI	GCAGC	6 cut(s)	11, 97, 100, 245, 318, 662
BccI	CCATC	2 cut(s)	248, 376
BciT130I	CCWGG	1 cut(s)	297
BfrI	CTTAAG	1 cut(s)	562
BisI	GCNGC	8 cut(s)	25, 28, 111, 114, 259, 307, 490, 651
BlsI	GCNGC	8 cut(s)	26, 29, 112, 115, 260, 308, 491, 652
Bme1390I	CCNGG	1 cut(s)	297
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	1 cut(s)	605
BmrFI	CCNGG	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	226
BsaAI	YACGTR	1 cut(s)	404
BsaWI	WCCGGW	1 cut(s)	655
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 151, 488
Bse1I	ACTGG	1 cut(s)	640
BseBI	CCWGG	1 cut(s)	297
BseGI	GGATG	4 cut(s)	10, 387, 674, 715
BseLI	CCNNNNNNNGG	3 cut(s)	20, 151, 488
BseMII	CTCAG	1 cut(s)	373
BseNI	ACTGG	1 cut(s)	640
BseRI	GAGGAG	1 cut(s)	700
BseXI	GCAGC	6 cut(s)	11, 97, 100, 245, 318, 662
BshNI	GGYRCC	1 cut(s)	603
BsiSI	CCGG	1 cut(s)	656
BslI	CCNNNNNNNGG	3 cut(s)	20, 151, 488
Bsp143I	GATC	3 cut(s)	272, 516, 671
BspACI	CCGC	6 cut(s)	28, 45, 108, 152, 489, 492
BspCNI	CTCAG	1 cut(s)	372
BspLI	GGNNCC	1 cut(s)	605
BspPI	GGATC	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	603
BspTI	CTTAAG	1 cut(s)	562
BsrI	ACTGG	1 cut(s)	640
BssMI	GATC	3 cut(s)	272, 516, 671
BssNAI	GTATAC	1 cut(s)	471
Bst1107I	GTATAC	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	297
Bst6I	CTCTTC	1 cut(s)	133
BstAFI	CTTAAG	1 cut(s)	562
BstBAI	YACGTR	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	487
BstDEI	CTNAG	1 cut(s)	359
BstF5I	GGATG	4 cut(s)	10, 387, 674, 715
BstKTI	GATC	3 cut(s)	275, 519, 674
BstMBI	GATC	3 cut(s)	272, 516, 671
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	295
BstSNI	TACGTA	1 cut(s)	404
BstV1I	GCAGC	6 cut(s)	11, 97, 100, 245, 318, 662
BstV2I	GAAGAC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	272
BstZ17I	GTATAC	1 cut(s)	471
BtsCI	GGATG	4 cut(s)	10, 387, 674, 715
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	76, 367
Cac8I	GCNNGC	1 cut(s)	487
Cfr13I	GGNCC	1 cut(s)	479
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	6 cut(s)	56, 146, 246, 311, 434, 626
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	1 cut(s)	359
DpnI	GATC	3 cut(s)	274, 518, 673
DpnII	GATC	3 cut(s)	272, 516, 671
DraI	TTTAAA	1 cut(s)	612
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
Eco105I	TACGTA	1 cut(s)	404
Eco32I	GATATC	2 cut(s)	176, 228
Eco47I	GGWCC	1 cut(s)	479
Eco57I	CTGAAG	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	295
EcoRV	GATATC	2 cut(s)	176, 228
FaeI	CATG	6 cut(s)	59, 149, 249, 314, 437, 629
FatI	CATG	6 cut(s)	55, 145, 245, 310, 433, 625
FauI	CCCGC	1 cut(s)	115
FauNDI	CATATG	1 cut(s)	618
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	8 cut(s)	25, 28, 111, 114, 259, 307, 490, 651
FokI	GGATG	3 cut(s)	394, 661, 702
Fsp4HI	GCNGC	8 cut(s)	25, 28, 111, 114, 259, 307, 490, 651
GluI	GCNGC	8 cut(s)	25, 28, 111, 114, 259, 307, 490, 651
HapII	CCGG	1 cut(s)	656
Hin1II	CATG	6 cut(s)	59, 149, 249, 314, 437, 629
HinfI	GANTC	2 cut(s)	63, 85
HpaII	CCGG	1 cut(s)	656
Hpy166II	GTNNAC	2 cut(s)	459, 471
Hpy188I	TCNGA	5 cut(s)	84, 218, 381, 516, 779
Hpy188III	TCNNGA	2 cut(s)	89, 171
Hpy8I	GTNNAC	2 cut(s)	459, 471
HpyAV	CCTTC	2 cut(s)	213, 340
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	1 cut(s)	650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	1 cut(s)	359
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	6 cut(s)	59, 149, 249, 314, 437, 629
Kzo9I	GATC	3 cut(s)	272, 516, 671
Lsp1109I	GCAGC	6 cut(s)	11, 97, 100, 245, 318, 662
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	5 cut(s)	179, 362, 389, 399, 621
MalI	GATC	3 cut(s)	274, 518, 673
MboI	GATC	3 cut(s)	272, 516, 671
MboII	GAAGA	7 cut(s)	89, 120, 128, 159, 183, 226, 296
MflI	RGATCY	1 cut(s)	272
MluCI	AATT	8 cut(s)	93, 291, 327, 443, 532, 545, 684, 722
MnlI	CCTC	5 cut(s)	132, 205, 272, 549, 721
MroXI	GAANNNNTTC	2 cut(s)	96, 291
MseI	TTAA	4 cut(s)	563, 611, 641, 728
MspA1I	CMGCKG	3 cut(s)	30, 110, 485
MspCI	CTTAAG	1 cut(s)	562
MspI	CCGG	1 cut(s)	656
MspR9I	CCNGG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	1 cut(s)	255
NdeI	CATATG	1 cut(s)	618
NdeII	GATC	3 cut(s)	272, 516, 671
NlaIII	CATG	6 cut(s)	59, 149, 249, 314, 437, 629
NlaIV	GGNNCC	1 cut(s)	605
NmeAIII	GCCGAG	1 cut(s)	580
NmuCI	GTSAC	2 cut(s)	362, 389
NspI	RCATGY	1 cut(s)	437
PciI	ACATGT	1 cut(s)	433
PdmI	GAANNNNTTC	2 cut(s)	96, 291
PfeI	GAWTC	2 cut(s)	63, 85
PkrI	GCNGC	8 cut(s)	26, 29, 112, 115, 260, 308, 491, 652
Ppu21I	YACGTR	1 cut(s)	404
PscI	ACATGT	1 cut(s)	433
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	605
PspPI	GGNCC	1 cut(s)	479
PsrI	GAACNNNNNNTAC	2 cut(s)	172, 204
PsuI	RGATCY	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SaqAI	TTAA	4 cut(s)	563, 611, 641, 728
SatI	GCNGC	8 cut(s)	25, 28, 111, 114, 259, 307, 490, 651
Sau3AI	GATC	3 cut(s)	272, 516, 671
Sau96I	GGNCC	1 cut(s)	479
ScrFI	CCNGG	1 cut(s)	297
SinI	GGWCC	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	562
SmoI	CTYRAG	1 cut(s)	562
SnaBI	TACGTA	1 cut(s)	404
Sse9I	AATT	8 cut(s)	93, 291, 327, 443, 532, 545, 684, 722
SsiI	CCGC	6 cut(s)	28, 45, 108, 152, 489, 492
StyD4I	CCNGG	1 cut(s)	295
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	1 cut(s)	88
TasI	AATT	8 cut(s)	93, 291, 327, 443, 532, 545, 684, 722
TauI	GCSGC	2 cut(s)	30, 492
TfiI	GAWTC	2 cut(s)	63, 85
Tru1I	TTAA	4 cut(s)	563, 611, 641, 728
Tru9I	TTAA	4 cut(s)	563, 611, 641, 728
TscAI	CASTG	2 cut(s)	76, 367
TseFI	GTSAC	2 cut(s)	362, 389
TseI	GCWGC	6 cut(s)	24, 110, 113, 258, 306, 650
Tsp45I	GTSAC	2 cut(s)	362, 389
TspDTI	ATGAA	3 cut(s)	44, 363, 779
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	2 cut(s)	76, 367
Vha464I	CTTAAG	1 cut(s)	562
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	2 cut(s)	93, 532
XceI	RCATGY	1 cut(s)	437
XmiI	GTMKAC	1 cut(s)	470
XmnI	GAANNNNTTC	2 cut(s)	96, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.