pycom01g17890

Belongs to the eukaryotic ribosomal protein eS26 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0002764
Physical Location & Seq
Forward (+)
17061570 .. 17063227
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 525 bp
ATGATAACAGGCGCCAGGCCGCTGTCCCATATAAAACGGAAGCCTTCCCGAATTCTTTCACTTTCTGGCTTCTGCAGCAACGAGAAAAACCCTAAACGGCCCCAGAACTCTCAGATCTCCTCCTCTCGGAACGCCATGACTTTCAAGCGCAGAAATGGAGGTCGCAACAAGCACGGCCGTGGACACGTCAAGTTCATCCGCTGCTCCAACTGCGGCAAGTGCTGCCCCAAGGACAAGGCCATCAAGAGATTCTTGGTGAGGAACATCGTCGAGCAAGCTGCTGTGAGAGATGTTCAGGAAGCCTGTATCTATGAGCAATACACGTTGCCTAAGCTGTATGCCAAGATGCAGTACTGTGTTTCCTGTGCAATTCACTCCCATGTTGTGAGGGTGCGATCCCGCACCAACAGGAGGAACCGTGAGCCACCACAGCGATTCATCAGACGCAGGGATGATGCCCCAAGGCCCGGTCAGCCTGGTCAAGCTCCCCGACCTGCTGGAGCTGGTGTTCCTGCTCGTACTTGA

Protein Analysis

175

Amino Acids

19.79

Weight (kDa)

11.35

Isoelectric Point (pI)

70.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S26e PF01283 46 - 151 1.6e-53 Ribosomal protein S26e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 502
AccB1I GGYRCC 1 cut(s) 11
AciI CCGC 4 cut(s) 20, 199, 213, 400
AclWI GGATC 1 cut(s) 390
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 2 cut(s) 353, 520
AfiI CCNNNNNNNGG 3 cut(s) 126, 411, 467
AflIII ACRYGT 2 cut(s) 184, 321
AgsI TTSAA 1 cut(s) 145
AjiI CACGTC 1 cut(s) 187
AjnI CCWGG 2 cut(s) 14, 475
AleI CACNNNNGTG 1 cut(s) 177
AloI GAACNNNNNNTCC 2 cut(s) 492, 524
AluBI AGCT 4 cut(s) 278, 334, 485, 503
AluI AGCT 4 cut(s) 278, 334, 485, 503
AlwI GGATC 1 cut(s) 390
AoxI GGCC 5 cut(s) 17, 98, 175, 237, 464
ApeKI GCWGC 4 cut(s) 75, 201, 222, 278
ApoI RAATTY 1 cut(s) 51
Asp700I GAANNNNTTC 1 cut(s) 55
AspLEI GCGC 2 cut(s) 14, 150
AspS9I GGNCC 2 cut(s) 99, 465
AsuC2I CCSGG 1 cut(s) 468
AsuHPI GGTGA 1 cut(s) 268
BanI GGYRCC 1 cut(s) 11
BbvI GCAGC 4 cut(s) 87, 188, 209, 265
BccI CCATC 1 cut(s) 248
BceAI ACGGC 3 cut(s) 113, 162, 190
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BciT130I CCWGG 2 cut(s) 16, 477
BcnI CCSGG 1 cut(s) 468
BfmI CTRYAG 1 cut(s) 73
BfoI RGCGCY 1 cut(s) 15
BfuAI ACCTGC 1 cut(s) 502
BglII AGATCT 1 cut(s) 114
BisI GCNGC 6 cut(s) 20, 76, 202, 214, 223, 279
BlsI GCNGC 6 cut(s) 21, 77, 203, 215, 224, 280
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 3 cut(s) 16, 468, 477
BmgBI CACGTC 1 cut(s) 187
BmgT120I GGNCC 2 cut(s) 99, 465
BmiI GGNNCC 3 cut(s) 13, 101, 416
BmrFI CCNGG 3 cut(s) 16, 468, 477
BmsI GCATC 2 cut(s) 336, 445
BpmI CTGGAG 1 cut(s) 519
Bpu10I CCTNAGC 1 cut(s) 330
BpuMI CCSGG 1 cut(s) 468
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 3 cut(s) 178, 228, 461
BsaXI ACNNNNNCTCC 4 cut(s) 403, 433, 492, 522
Bsc4I CCNNNNNNNGG 3 cut(s) 126, 411, 467
BseBI CCWGG 2 cut(s) 16, 477
BseDI CCNNGG 3 cut(s) 178, 228, 461
BseGI GGATG 2 cut(s) 195, 457
BseLI CCNNNNNNNGG 3 cut(s) 126, 411, 467
BseMII CTCAG 1 cut(s) 125
BseRI GAGGAG 2 cut(s) 109, 112
BseX3I CGGCCG 1 cut(s) 175
BseXI GCAGC 4 cut(s) 87, 188, 209, 265
Bsh1285I CGRYCG 1 cut(s) 178
BshFI GGCC 5 cut(s) 19, 100, 177, 239, 466
BshNI GGYRCC 1 cut(s) 11
BsiEI CGRYCG 1 cut(s) 178
BsiSI CCGG 1 cut(s) 468
BslFI GGGAC 1 cut(s) 10
BslI CCNNNNNNNGG 3 cut(s) 126, 411, 467
BsmFI GGGAC 1 cut(s) 10
BsnI GGCC 5 cut(s) 19, 100, 177, 239, 466
Bsp143I GATC 2 cut(s) 114, 395
BspACI CCGC 4 cut(s) 20, 199, 213, 400
BspANI GGCC 5 cut(s) 19, 100, 177, 239, 466
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 3 cut(s) 13, 101, 416
BspMAI CTGCAG 1 cut(s) 77
BspMI ACCTGC 1 cut(s) 502
BspPI GGATC 1 cut(s) 390
BspT107I GGYRCC 1 cut(s) 11
BssECI CCNNGG 3 cut(s) 178, 228, 461
BssMI GATC 2 cut(s) 114, 395
BssNI GRCGYC 1 cut(s) 12
BssT1I CCWWGG 2 cut(s) 228, 461
Bst2UI CCWGG 2 cut(s) 16, 477
Bst4CI ACNGT 2 cut(s) 356, 419
BstACI GRCGYC 1 cut(s) 12
BstAPI GCANNNNNTGC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 2 cut(s) 111, 330
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 2 cut(s) 195, 457
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 2 cut(s) 14, 150
BstKTI GATC 2 cut(s) 117, 398
BstMBI GATC 2 cut(s) 114, 395
BstMCI CGRYCG 1 cut(s) 178
BstMWI GCNNNNNNNGC 6 cut(s) 75, 210, 219, 222, 430, 472
BstNI CCWGG 2 cut(s) 16, 477
BstSCI CCNGG 3 cut(s) 14, 466, 475
BstSFI CTRYAG 1 cut(s) 73
BstV1I GCAGC 4 cut(s) 87, 188, 209, 265
BstX2I RGATCY 1 cut(s) 114
BstYI RGATCY 1 cut(s) 114
BstZI CGGCCG 1 cut(s) 175
BsuRI GGCC 5 cut(s) 19, 100, 177, 239, 466
BtgI CCRYGG 1 cut(s) 178
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 2 cut(s) 195, 457
BveI ACCTGC 1 cut(s) 502
Cac8I GCNNGC 1 cut(s) 276
CfoI GCGC 2 cut(s) 14, 150
Cfr13I GGNCC 2 cut(s) 99, 465
CseI GACGC 1 cut(s) 453
Csp6I GTAC 2 cut(s) 352, 519
CviAII CATG 2 cut(s) 136, 380
CviQI GTAC 2 cut(s) 352, 519
DdeI CTNAG 2 cut(s) 111, 330
DinI GGCGCC 1 cut(s) 13
DpnI GATC 2 cut(s) 116, 397
DpnII GATC 2 cut(s) 114, 395
EaeI YGGCCR 1 cut(s) 175
EagI CGGCCG 1 cut(s) 175
EclXI CGGCCG 1 cut(s) 175
Eco130I CCWWGG 2 cut(s) 228, 461
Eco52I CGGCCG 1 cut(s) 175
EcoRI GAATTC 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 14, 475
EcoT14I CCWWGG 2 cut(s) 228, 461
EgeI GGCGCC 1 cut(s) 13
EheI GGCGCC 1 cut(s) 13
ErhI CCWWGG 2 cut(s) 228, 461
FaeI CATG 2 cut(s) 139, 383
FaiI YATR 6 cut(s) 30, 32, 137, 312, 339, 381
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FaqI GGGAC 1 cut(s) 10
FatI CATG 2 cut(s) 135, 379
FauI CCCGC 1 cut(s) 407
Fnu4HI GCNGC 6 cut(s) 20, 76, 202, 214, 223, 279
FokI GGATG 2 cut(s) 182, 464
Fsp4HI GCNGC 6 cut(s) 20, 76, 202, 214, 223, 279
GlaI GCGC 2 cut(s) 13, 149
GluI GCNGC 6 cut(s) 20, 76, 202, 214, 223, 279
GsuI CTGGAG 1 cut(s) 519
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 5 cut(s) 19, 100, 177, 239, 466
HapII CCGG 1 cut(s) 468
HgaI GACGC 1 cut(s) 453
HhaI GCGC 2 cut(s) 14, 150
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 2 cut(s) 139, 383
Hin6I GCGC 2 cut(s) 12, 148
HinP1I GCGC 2 cut(s) 12, 148
HinfI GANTC 2 cut(s) 249, 435
HpaII CCGG 1 cut(s) 468
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 3 cut(s) 114, 129, 443
Hpy188III TCNNGA 3 cut(s) 48, 244, 296
Hpy8I GTNNAC 1 cut(s) 182
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 2 cut(s) 356, 419
HpyCH4IV ACGT 2 cut(s) 186, 323
HpyCH4V TGCA 3 cut(s) 75, 349, 368
HpyF10VI GCNNNNNNNGC 6 cut(s) 75, 210, 219, 222, 430, 472
HpyF3I CTNAG 2 cut(s) 111, 330
HpySE526I ACGT 2 cut(s) 186, 323
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 2 cut(s) 139, 383
HspAI GCGC 2 cut(s) 12, 148
KasI GGCGCC 1 cut(s) 11
Kzo9I GATC 2 cut(s) 114, 395
LmnI GCTCC 3 cut(s) 209, 490, 500
Lsp1109I GCAGC 4 cut(s) 87, 188, 209, 265
LweI GCATC 2 cut(s) 336, 445
MaeII ACGT 2 cut(s) 186, 323
MalI GATC 2 cut(s) 116, 397
MboI GATC 2 cut(s) 114, 395
MflI RGATCY 1 cut(s) 114
MluCI AATT 2 cut(s) 51, 369
Mly113I GGCGCC 1 cut(s) 12
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 6 cut(s) 130, 133, 152, 252, 381, 405
MroXI GAANNNNTTC 1 cut(s) 55
MslI CAYNNNNRTG 2 cut(s) 177, 378
MspA1I CMGCKG 2 cut(s) 22, 201
MspI CCGG 1 cut(s) 468
MspR9I CCNGG 3 cut(s) 16, 468, 477
MvaI CCWGG 2 cut(s) 16, 477
MwoI GCNNNNNNNGC 6 cut(s) 75, 210, 219, 222, 430, 472
NarI GGCGCC 1 cut(s) 12
NciI CCSGG 1 cut(s) 468
NdeII GATC 2 cut(s) 114, 395
NlaIII CATG 2 cut(s) 139, 383
NlaIV GGNNCC 3 cut(s) 13, 101, 416
OliI CACNNNNGTG 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 55
PfeI GAWTC 2 cut(s) 249, 435
PkrI GCNGC 6 cut(s) 21, 77, 203, 215, 224, 280
PluTI GGCGCC 1 cut(s) 15
Psp6I CCWGG 2 cut(s) 14, 475
PspGI CCWGG 2 cut(s) 14, 475
PspN4I GGNNCC 3 cut(s) 13, 101, 416
PspPI GGNCC 2 cut(s) 99, 465
PstI CTGCAG 1 cut(s) 77
PsuI RGATCY 1 cut(s) 114
RsaI GTAC 2 cut(s) 353, 520
RsaNI GTAC 2 cut(s) 352, 519
RseI CAYNNNNRTG 2 cut(s) 177, 378
SatI GCNGC 6 cut(s) 20, 76, 202, 214, 223, 279
Sau3AI GATC 2 cut(s) 114, 395
Sau96I GGNCC 2 cut(s) 99, 465
ScaI AGTACT 1 cut(s) 353
ScrFI CCNGG 3 cut(s) 16, 468, 477
SetI ASST 8 cut(s) 163, 189, 280, 326, 336, 487, 496, 505
SfaNI GCATC 2 cut(s) 336, 445
SfcI CTRYAG 1 cut(s) 73
SfoI GGCGCC 1 cut(s) 13
SmiMI CAYNNNNRTG 2 cut(s) 177, 378
Sse9I AATT 2 cut(s) 51, 369
SsiI CCGC 4 cut(s) 20, 199, 213, 400
SspDI GGCGCC 1 cut(s) 11
StyD4I CCNGG 3 cut(s) 14, 466, 475
StyI CCWWGG 2 cut(s) 228, 461
TaaI ACNGT 2 cut(s) 356, 419
TaiI ACGT 2 cut(s) 189, 326
TaqI TCGA 1 cut(s) 270
TasI AATT 2 cut(s) 51, 369
TatI WGTACW 1 cut(s) 351
TauI GCSGC 2 cut(s) 22, 216
TfiI GAWTC 2 cut(s) 249, 435
TseI GCWGC 4 cut(s) 75, 201, 222, 278
TspDTI ATGAA 2 cut(s) 184, 427
TspGWI ACGGA 1 cut(s) 52
XapI RAATTY 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 55
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.