Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Forward (+)

12489991 .. 12490603

Gene Structure 613 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCACCGACCTGTTATCCTTCCACTGCCAAAAGAAACCTGAGCCTTCGCCCAGACCACACGGCTCAACTCTCGGCTTGGAATGGGCGGGCCAGAATAGAGCCACGACAGAACCGACCCGCTGAAACCAGACCAGCGTTATGCACGACAGCTCCCACTGCCACACAACCCAGTTCAAGACTGCGCTGTCCAAGCACCGCCAAAGACTGGAAGGGTCTCCGTGTCACCATCAAGCTCACCGTCCAGAACAGGCAAGCCAAGGTCTCGGTGGTGCCGTCGGCGGCTGCCCTGGTAATCAAGGCCTTGAAGGAGCCCGAGCGCGATCGCAAGAAGACCAAGAACATCAAGCACAGCGGCAACATCTCCATCGATGACGTCATCGAGATAGCCAAGGTTATGAGGAACAGATCCATGGCCAAGGAGCTCGCCGGCACGGTGAAGGAGATTCTCGGAACCTGCGTCTCGGTGGGCTGCACGGTCGACGGCAAGGACCCCAAGGATTTGCAACAGGAGATCACCGACGGTGACGTTGAGATCCCTCTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

183

Amino Acids

19.92

Weight (kDa)

9.71

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11	PF00298	91 - 160	1.2e-19	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	186
AatII	GACGTC	1 cut(s)	378
Acc36I	ACCTGC	1 cut(s)	464
AccB1I	GGYRCC	2 cut(s)	4, 271
AccB7I	CCANNNNNTGG	1 cut(s)	207
AccI	GTMKAC	1 cut(s)	480
AccII	CGCG	1 cut(s)	321
AciI	CCGC	5 cut(s)	88, 120, 198, 281, 354
AclWI	GGATC	2 cut(s)	402, 529
AcoI	YGGCCR	1 cut(s)	414
AcyI	GRCGYC	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	2 cut(s)	177, 307
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	3 cut(s)	152, 235, 424
AluI	AGCT	3 cut(s)	152, 235, 424
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	3 cut(s)	221, 268, 466
AlwI	GGATC	2 cut(s)	402, 529
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	3 cut(s)	90, 300, 414
ApeKI	GCWGC	2 cut(s)	284, 471
AsiSI	GCGATCGC	1 cut(s)	325
AspLEI	GCGC	2 cut(s)	186, 321
AspS9I	GGNCC	2 cut(s)	90, 490
AsuHPI	GGTGA	5 cut(s)	217, 229, 448, 508, 536
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	490
BalI	TGGCCA	1 cut(s)	416
BanI	GGYRCC	2 cut(s)	4, 271
BanII	GRGCYC	2 cut(s)	315, 426
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	271, 458
BccI	CCATC	2 cut(s)	236, 374
BceAI	ACGGC	3 cut(s)	78, 259, 499
BciT130I	CCWGG	1 cut(s)	290
BcoDI	GTCTC	3 cut(s)	221, 268, 466
BfuAI	ACCTGC	1 cut(s)	464
BisI	GCNGC	4 cut(s)	282, 285, 355, 472
BlsI	GCNGC	4 cut(s)	283, 286, 356, 473
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	490
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	2 cut(s)	90, 490
BmiI	GGNNCC	5 cut(s)	6, 273, 312, 454, 492
BmrFI	CCNGG	1 cut(s)	290
BmrI	ACTGGG	1 cut(s)	165
BmuI	ACTGGG	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	338
Bpu10I	CCTNAGC	1 cut(s)	41
Bsa29I	ATCGAT	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	375
BsaI	GGTCTC	2 cut(s)	221, 268
BsaJI	CCNNGG	6 cut(s)	258, 288, 390, 411, 417, 495
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	2 cut(s)	171, 212
BseBI	CCWGG	1 cut(s)	290
BseCI	ATCGAT	1 cut(s)	369
BseDI	CCNNGG	6 cut(s)	258, 288, 390, 411, 417, 495
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	2 cut(s)	171, 212
BseXI	GCAGC	2 cut(s)	271, 458
BsgI	GTGCAG	1 cut(s)	457
Bsh1236I	CGCG	1 cut(s)	321
Bsh1285I	CGRYCG	2 cut(s)	325, 480
BshFI	GGCC	3 cut(s)	92, 302, 416
BshNI	GGYRCC	2 cut(s)	4, 271
BshVI	ATCGAT	1 cut(s)	369
BsiEI	CGRYCG	2 cut(s)	325, 480
BsiHKAI	GWGCWC	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	3 cut(s)	221, 268, 466
BsmBI	CGTCTC	1 cut(s)	466
BsnI	GGCC	3 cut(s)	92, 302, 416
Bso31I	GGTCTC	2 cut(s)	221, 268
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	315, 426
Bsp143I	GATC	4 cut(s)	322, 407, 513, 534
Bsp19I	CCATGG	1 cut(s)	411
BspACI	CCGC	5 cut(s)	88, 120, 198, 281, 354
BspANI	GGCC	3 cut(s)	92, 302, 416
BspCNI	CTCAG	1 cut(s)	33
BspDI	ATCGAT	1 cut(s)	369
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	5 cut(s)	6, 273, 312, 454, 492
BspMI	ACCTGC	1 cut(s)	464
BspPI	GGATC	2 cut(s)	402, 529
BspT107I	GGYRCC	2 cut(s)	4, 271
BspTNI	GGTCTC	2 cut(s)	221, 268
BsrFI	RCCGGY	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	171, 212
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	6 cut(s)	258, 288, 390, 411, 417, 495
BssMI	GATC	4 cut(s)	322, 407, 513, 534
BssNI	GRCGYC	1 cut(s)	375
BssT1I	CCWWGG	5 cut(s)	258, 390, 411, 417, 495
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	4 cut(s)	241, 436, 478, 524
BstACI	GRCGYC	1 cut(s)	375
BstC8I	GCNNGC	4 cut(s)	90, 255, 426, 430
BstDEI	CTNAG	1 cut(s)	41
BstDSI	CCRYGG	1 cut(s)	411
BstFNI	CGCG	1 cut(s)	321
BstHHI	GCGC	2 cut(s)	186, 321
BstKTI	GATC	4 cut(s)	325, 410, 516, 537
BstMAI	GTCTC	3 cut(s)	221, 268, 466
BstMBI	GATC	4 cut(s)	322, 407, 513, 534
BstMCI	CGRYCG	2 cut(s)	325, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 192
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	271, 458
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	2 cut(s)	407, 534
BstYI	RGATCY	2 cut(s)	407, 534
Bsu15I	ATCGAT	1 cut(s)	369
BsuRI	GGCC	3 cut(s)	92, 302, 416
BsuTUI	ATCGAT	1 cut(s)	369
BtgI	CCRYGG	1 cut(s)	411
BtsI	GCAGTG	2 cut(s)	24, 156
BtsIMutI	CAGTG	2 cut(s)	24, 156
BveI	ACCTGC	1 cut(s)	464
Cac8I	GCNNGC	4 cut(s)	90, 255, 426, 430
CfoI	GCGC	2 cut(s)	186, 321
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	90, 490
ClaI	ATCGAT	1 cut(s)	369
CseI	GACGC	1 cut(s)	448
CviAII	CATG	1 cut(s)	412
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	4 cut(s)	324, 409, 515, 536
DpnII	GATC	4 cut(s)	322, 407, 513, 534
DrdI	GACNNNNNNGTC	1 cut(s)	186
DseDI	GACNNNNNNGTC	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	414
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	5 cut(s)	258, 390, 411, 417, 495
Eco147I	AGGCCT	1 cut(s)	302
Eco24I	GRGCYC	2 cut(s)	315, 426
Eco31I	GGTCTC	2 cut(s)	221, 268
Eco47I	GGWCC	1 cut(s)	490
Eco53kI	GAGCTC	1 cut(s)	424
Eco88I	CYCGRG	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	424
EcoO109I	RGGNCCY	1 cut(s)	490
EcoRII	CCWGG	1 cut(s)	288
EcoT14I	CCWWGG	5 cut(s)	258, 390, 411, 417, 495
EcoT38I	GRGCYC	2 cut(s)	315, 426
ErhI	CCWWGG	5 cut(s)	258, 390, 411, 417, 495
Esp3I	CGTCTC	1 cut(s)	466
FaeI	CATG	1 cut(s)	415
FaiI	YATR	3 cut(s)	142, 398, 413
FatI	CATG	1 cut(s)	411
FauI	CCCGC	2 cut(s)	81, 127
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	4 cut(s)	282, 285, 355, 472
FriOI	GRGCYC	2 cut(s)	315, 426
Fsp4HI	GCNGC	4 cut(s)	282, 285, 355, 472
GlaI	GCGC	2 cut(s)	185, 320
GluI	GCNGC	4 cut(s)	282, 285, 355, 472
HaeIII	GGCC	3 cut(s)	92, 302, 416
HapII	CCGG	1 cut(s)	429
HgaI	GACGC	1 cut(s)	448
HhaI	GCGC	2 cut(s)	186, 321
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	1 cut(s)	415
Hin6I	GCGC	2 cut(s)	184, 319
HinP1I	GCGC	2 cut(s)	184, 319
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	1 cut(s)	445
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	5 cut(s)	217, 229, 448, 508, 536
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	1 cut(s)	452
Hpy188III	TCNNGA	4 cut(s)	177, 244, 382, 542
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	3 cut(s)	280, 485, 524
HpyAV	CCTTC	5 cut(s)	30, 56, 205, 301, 433
HpyCH4III	ACNGT	4 cut(s)	241, 436, 478, 524
HpyCH4IV	ACGT	2 cut(s)	375, 528
HpyCH4V	TGCA	3 cut(s)	144, 474, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 192
HpyF3I	CTNAG	1 cut(s)	41
HpySE526I	ACGT	2 cut(s)	375, 528
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	1 cut(s)	415
HspAI	GCGC	2 cut(s)	184, 319
KroI	GCCGGC	1 cut(s)	428
KroNI	GCCGGC	1 cut(s)	430
Kzo9I	GATC	4 cut(s)	322, 407, 513, 534
LmnI	GCTCC	3 cut(s)	157, 310, 421
Lsp1109I	GCAGC	2 cut(s)	271, 458
MaeII	ACGT	2 cut(s)	375, 528
MaeIII	GTNAC	2 cut(s)	223, 524
MalI	GATC	4 cut(s)	324, 409, 515, 536
MboI	GATC	4 cut(s)	322, 407, 513, 534
MboII	GAAGA	1 cut(s)	343
MflI	RGATCY	2 cut(s)	407, 534
MhlI	GDGCHC	2 cut(s)	315, 426
MlsI	TGGCCA	1 cut(s)	416
MluNI	TGGCCA	1 cut(s)	416
MnlI	CCTC	2 cut(s)	393, 549
Mox20I	TGGCCA	1 cut(s)	416
MroNI	GCCGGC	1 cut(s)	428
MscI	TGGCCA	1 cut(s)	416
Msp20I	TGGCCA	1 cut(s)	416
MspA1I	CMGCKG	2 cut(s)	122, 354
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	290
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	158, 192
NaeI	GCCGGC	1 cut(s)	430
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	4 cut(s)	322, 407, 513, 534
NgoMIV	GCCGGC	1 cut(s)	428
NlaIII	CATG	1 cut(s)	415
NlaIV	GGNNCC	5 cut(s)	6, 273, 312, 454, 492
NmeAIII	GCCGAG	1 cut(s)	53
NmuCI	GTSAC	2 cut(s)	223, 524
PceI	AGGCCT	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	3 cut(s)	112, 272, 456
PdiI	GCCGGC	1 cut(s)	430
PfeI	GAWTC	1 cut(s)	445
PflMI	CCANNNNNTGG	1 cut(s)	207
PkrI	GCNGC	4 cut(s)	283, 286, 356, 473
Ple19I	CGATCG	1 cut(s)	325
PpuMI	RGGWCCY	1 cut(s)	490
Psp124BI	GAGCTC	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	5 cut(s)	6, 273, 312, 454, 492
PspPI	GGNCC	2 cut(s)	90, 490
PspPPI	RGGWCCY	1 cut(s)	490
PsuI	RGATCY	2 cut(s)	407, 534
PvuI	CGATCG	1 cut(s)	325
RgaI	GCGATCGC	1 cut(s)	325
SacI	GAGCTC	1 cut(s)	426
SalI	GTCGAC	1 cut(s)	479
SatI	GCNGC	4 cut(s)	282, 285, 355, 472
Sau3AI	GATC	4 cut(s)	322, 407, 513, 534
Sau96I	GGNCC	2 cut(s)	90, 490
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	2 cut(s)	315, 426
SfaAI	GCGATCGC	1 cut(s)	325
SgfI	GCGATCGC	1 cut(s)	325
SinI	GGWCC	1 cut(s)	490
SseBI	AGGCCT	1 cut(s)	302
SsiI	CCGC	5 cut(s)	88, 120, 198, 281, 354
SstI	GAGCTC	1 cut(s)	426
StuI	AGGCCT	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	288
StyI	CCWWGG	5 cut(s)	258, 390, 411, 417, 495
TaaI	ACNGT	4 cut(s)	241, 436, 478, 524
TaiI	ACGT	2 cut(s)	378, 531
TaqI	TCGA	4 cut(s)	369, 381, 480, 543
TauI	GCSGC	2 cut(s)	284, 357
TfiI	GAWTC	1 cut(s)	445
TscAI	CASTG	2 cut(s)	31, 163
TseFI	GTSAC	2 cut(s)	223, 524
TseI	GCWGC	2 cut(s)	284, 471
Tsp45I	GTSAC	2 cut(s)	223, 524
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	2 cut(s)	31, 163
Van91I	CCANNNNNTGG	1 cut(s)	207
VpaK11BI	GGWCC	1 cut(s)	490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	480
ZraI	GACGTC	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.