Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002608

Physical Location & Seq

Genomic Coordinates Reverse (-)

12732387 .. 12732903

Gene Structure 517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCAGCGAAGCTTCTCGCTTCCGCTCTCCGCCGCCAAACCCTAACCCCAAAACCTGCCTCCGTTGCCTCCCATCTCGTCCGCACCGTCTCCACCGCGGCTGCCGTCGCCGAACCCTTCGACGACGCAGATGGAGTTTCAATGAAAGGGGTGAAAATTTATGGCCGGCCTCTGTACCTGGACATGCAGGCCACGTCGCCGGTGGACCCCAGGGTCGTCGATGCCATGCTTCCTTACTACCTCACCCGGTACGGAAATCCCCACTCCCGGACCCACATGTACGGCTGGGAGTCCGACTCCGCTGTTGAGACGGCCCGCGCCCAGGTCGCCGACTTAATCGGCGCCTCCCCCAAAGAAATCGTCTTCACCTCCGGCGCCACCGAGTGCAACAACATCTCCGTCAAGGGCGTCATGCACTTCTACAAGGACAAGAAGCGCCATGTCATCACCACCCAGACGGAGGCTACGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016226 GO:0016740 GO:0016782 GO:0016783 GO:0017076 GO:0022607 GO:0030554 GO:0031071 GO:0031163 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051186 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 ko04122 map00730 map01100 map04122

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

158

Amino Acids

17.12

Weight (kDa)

9.01

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	59 - 155	9.7e-26	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65720 AT5G65720 AT5G65720
fragaria_vesca	FvH4_1g18610 FvH4_3g39110 FvH4_4g11530
malus_domestica	MD15G1303800.v1.1
prunus_persica	Prupe.6G213300_v2.0.a1
pyrus_communis	pycom02g15750 pycom02g15760 pycom12g09240 pycom14g03250 pycom15g26680
rosa_chinensis	RchiOBHm_Chr2g0109351 RchiOBHm_Chr2g0109391 RchiOBHm_Chr5g0045361
rosa_laevigata	RLG00000017733
rosa_multiflora	Rmu_sc0000332.1_g000011 Rmu_sc0001940.1_g000003 Rmu_sc0012764.1_g000010
rosa_roxburghii	Rroxscaffold_2G00134280
rosa_rugosa	Rorug02G0159500
rosa_samantha	Rh2AG211300 Rh2AG211600 Rh2BG221300 Rh2BG221400 Rh2BG221500 Rh2BG222000 Rh2CG213300 Rh2CG213900 Rh2DG217100 Rh2DG217400 Rh4BG181900 Rh5AG243200 Rh5BG312000 Rh5DG322600 Rh6CG498200 Rh7BG128000
rosa_wichuraiana	Rw5G028200 Rw5G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	212
Acc36I	ACCTGC	1 cut(s)	64
AccB1I	GGYRCC	2 cut(s)	341, 374
AccBSI	CCGCTC	1 cut(s)	26
AccII	CGCG	2 cut(s)	98, 318
AciI	CCGC	8 cut(s)	24, 31, 34, 82, 96, 98, 300, 316
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	156
AcyI	GRCGYC	3 cut(s)	342, 375, 408
AdeI	CACNNNGTG	1 cut(s)	384
AfaI	GTAC	3 cut(s)	176, 251, 281
AfiI	CCNNNNNNNGG	3 cut(s)	267, 322, 460
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	141
AjiI	CACGTC	1 cut(s)	195
AjnI	CCWGG	3 cut(s)	177, 209, 321
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
Alw26I	GTCTC	2 cut(s)	94, 302
AoxI	GGCC	4 cut(s)	163, 167, 189, 312
ApeKI	GCWGC	2 cut(s)	5, 101
ApoI	RAATTY	1 cut(s)	156
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
AspLEI	GCGC	4 cut(s)	320, 344, 377, 438
AspS9I	GGNCC	3 cut(s)	205, 270, 313
AsuC2I	CCSGG	2 cut(s)	247, 268
AsuHPI	GGTGA	4 cut(s)	163, 235, 358, 439
AvaII	GGWCC	2 cut(s)	205, 270
BanI	GGYRCC	2 cut(s)	341, 374
BbsI	GAAGAC	1 cut(s)	355
BbvI	GCAGC	2 cut(s)	17, 88
BccI	CCATC	2 cut(s)	81, 125
BceAI	ACGGC	3 cut(s)	89, 298, 327
BciT130I	CCWGG	3 cut(s)	179, 211, 323
BcnI	CCSGG	2 cut(s)	247, 268
BcoDI	GTCTC	2 cut(s)	94, 302
BfoI	RGCGCY	3 cut(s)	345, 378, 439
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	4 cut(s)	6, 34, 99, 102
BlsI	GCNGC	4 cut(s)	7, 35, 100, 103
Bme1390I	CCNGG	5 cut(s)	179, 211, 247, 268, 323
Bme18I	GGWCC	2 cut(s)	205, 270
BmgBI	CACGTC	1 cut(s)	195
BmgT120I	GGNCC	3 cut(s)	205, 270, 313
BmiI	GGNNCC	4 cut(s)	207, 272, 343, 376
BmrFI	CCNGG	5 cut(s)	179, 211, 247, 268, 323
BmsI	GCATC	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	355
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BpuMI	CCSGG	2 cut(s)	247, 268
BsaHI	GRCGYC	3 cut(s)	342, 375, 408
BsaJI	CCNNGG	4 cut(s)	96, 209, 210, 321
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	3 cut(s)	267, 322, 460
Bse118I	RCCGGY	2 cut(s)	165, 199
BseBI	CCWGG	3 cut(s)	179, 211, 323
BseDI	CCNNGG	4 cut(s)	96, 209, 210, 321
BseLI	CCNNNNNNNGG	3 cut(s)	267, 322, 460
BseXI	GCAGC	2 cut(s)	17, 88
BseYI	CCCAGC	1 cut(s)	285
Bsh1236I	CGCG	2 cut(s)	98, 318
BshFI	GGCC	4 cut(s)	165, 169, 191, 314
BshNI	GGYRCC	2 cut(s)	341, 374
BsiSI	CCGG	5 cut(s)	166, 200, 247, 268, 372
BslI	CCNNNNNNNGG	3 cut(s)	267, 322, 460
BsmAI	GTCTC	2 cut(s)	94, 302
BsmBI	CGTCTC	2 cut(s)	94, 302
BsnI	GGCC	4 cut(s)	165, 169, 191, 314
BspACI	CCGC	8 cut(s)	24, 31, 34, 82, 96, 98, 300, 316
BspANI	GGCC	4 cut(s)	165, 169, 191, 314
BspFNI	CGCG	2 cut(s)	98, 318
BspLI	GGNNCC	4 cut(s)	207, 272, 343, 376
BspMI	ACCTGC	1 cut(s)	64
BspT107I	GGYRCC	2 cut(s)	341, 374
BsrBI	CCGCTC	1 cut(s)	26
BsrFI	RCCGGY	2 cut(s)	165, 199
BssAI	RCCGGY	2 cut(s)	165, 199
BssECI	CCNNGG	4 cut(s)	96, 209, 210, 321
BssNI	GRCGYC	3 cut(s)	342, 375, 408
Bst2UI	CCWGG	3 cut(s)	179, 211, 323
Bst4CI	ACNGT	1 cut(s)	88
BstACI	GRCGYC	3 cut(s)	342, 375, 408
BstC8I	GCNNGC	3 cut(s)	167, 189, 316
BstDSI	CCRYGG	1 cut(s)	96
BstFNI	CGCG	2 cut(s)	98, 318
BstH2I	RGCGCY	3 cut(s)	345, 378, 439
BstHHI	GCGC	4 cut(s)	320, 344, 377, 438
BstMAI	GTCTC	2 cut(s)	94, 302
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 107, 326
BstNI	CCWGG	3 cut(s)	179, 211, 323
BstNSI	RCATGY	2 cut(s)	187, 280
BstSCI	CCNGG	5 cut(s)	177, 209, 245, 266, 321
BstUI	CGCG	2 cut(s)	98, 318
BstV1I	GCAGC	2 cut(s)	17, 88
BstV2I	GAAGAC	1 cut(s)	355
BsuRI	GGCC	4 cut(s)	165, 169, 191, 314
BtgI	CCRYGG	1 cut(s)	96
BtrI	CACGTC	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	3 cut(s)	167, 189, 316
CfoI	GCGC	4 cut(s)	320, 344, 377, 438
Cfr10I	RCCGGY	2 cut(s)	165, 199
Cfr13I	GGNCC	3 cut(s)	205, 270, 313
Cfr42I	CCGCGG	1 cut(s)	99
CseI	GACGC	2 cut(s)	134, 397
Csp6I	GTAC	3 cut(s)	175, 250, 280
CviAII	CATG	5 cut(s)	184, 226, 277, 412, 440
CviJI	RGCY	8 cut(s)	13, 101, 165, 169, 191, 285, 314, 464
CviKI_1	RGCY	8 cut(s)	13, 101, 165, 169, 191, 285, 314, 464
CviQI	GTAC	3 cut(s)	175, 250, 280
DinI	GGCGCC	2 cut(s)	343, 376
DraIII	CACNNNGTG	1 cut(s)	384
DrdI	GACNNNNNNGTC	1 cut(s)	212
DseDI	GACNNNNNNGTC	1 cut(s)	212
EaeI	YGGCCR	1 cut(s)	163
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	2 cut(s)	205, 270
EcoRII	CCWGG	3 cut(s)	177, 209, 321
EgeI	GGCGCC	2 cut(s)	343, 376
EheI	GGCGCC	2 cut(s)	343, 376
Esp3I	CGTCTC	2 cut(s)	94, 302
FaeI	CATG	5 cut(s)	187, 229, 280, 415, 443
FaiI	YATR	6 cut(s)	162, 185, 227, 278, 413, 441
FatI	CATG	5 cut(s)	183, 225, 276, 411, 439
FauI	CCCGC	1 cut(s)	323
Fnu4HI	GCNGC	4 cut(s)	6, 34, 99, 102
FseI	GGCCGGCC	1 cut(s)	169
Fsp4HI	GCNGC	4 cut(s)	6, 34, 99, 102
GlaI	GCGC	4 cut(s)	319, 343, 376, 437
GluI	GCNGC	4 cut(s)	6, 34, 99, 102
GsaI	CCCAGC	1 cut(s)	289
HaeII	RGCGCY	3 cut(s)	345, 378, 439
HaeIII	GGCC	4 cut(s)	165, 169, 191, 314
HapII	CCGG	5 cut(s)	166, 200, 247, 268, 372
HgaI	GACGC	2 cut(s)	134, 397
HhaI	GCGC	4 cut(s)	320, 344, 377, 438
Hin1I	GRCGYC	3 cut(s)	342, 375, 408
Hin1II	CATG	5 cut(s)	187, 229, 280, 415, 443
Hin6I	GCGC	4 cut(s)	318, 342, 375, 436
HinP1I	GCGC	4 cut(s)	318, 342, 375, 436
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	2 cut(s)	290, 296
HpaII	CCGG	5 cut(s)	166, 200, 247, 268, 372
HphI	GGTGA	4 cut(s)	163, 235, 358, 439
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	295
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	5 cut(s)	110, 125, 128, 199, 221
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	194
HpyCH4V	TGCA	3 cut(s)	187, 387, 415
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 107, 326
HpySE526I	ACGT	1 cut(s)	194
Hsp92I	GRCGYC	3 cut(s)	342, 375, 408
Hsp92II	CATG	5 cut(s)	187, 229, 280, 415, 443
HspAI	GCGC	4 cut(s)	318, 342, 375, 436
KasI	GGCGCC	2 cut(s)	341, 374
KroI	GCCGGC	1 cut(s)	165
KroNI	GCCGGC	1 cut(s)	167
KspI	CCGCGG	1 cut(s)	99
Lsp1109I	GCAGC	2 cut(s)	17, 88
LweI	GCATC	1 cut(s)	211
MaeII	ACGT	1 cut(s)	194
MbiI	CCGCTC	1 cut(s)	26
MboII	GAAGA	1 cut(s)	355
MluCI	AATT	1 cut(s)	156
Mly113I	GGCGCC	2 cut(s)	342, 375
MlyI	GAGTC	2 cut(s)	290, 299
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	7 cut(s)	70, 79, 180, 251, 355, 379, 454
MroNI	GCCGGC	1 cut(s)	165
MseI	TTAA	1 cut(s)	335
MspA1I	CMGCKG	2 cut(s)	98, 302
MspI	CCGG	5 cut(s)	166, 200, 247, 268, 372
MspR9I	CCNGG	5 cut(s)	179, 211, 247, 268, 323
MvaI	CCWGG	3 cut(s)	179, 211, 323
MvnI	CGCG	2 cut(s)	98, 318
MwoI	GCNNNNNNNGC	3 cut(s)	65, 107, 326
NaeI	GCCGGC	1 cut(s)	167
NarI	GGCGCC	2 cut(s)	342, 375
NciI	CCSGG	2 cut(s)	247, 268
NgoMIV	GCCGGC	1 cut(s)	165
NlaIII	CATG	5 cut(s)	187, 229, 280, 415, 443
NlaIV	GGNNCC	4 cut(s)	207, 272, 343, 376
NspI	RCATGY	2 cut(s)	187, 280
PasI	CCCWGGG	1 cut(s)	210
PciI	ACATGT	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 464
PdiI	GCCGGC	1 cut(s)	167
PfoI	TCCNGGA	1 cut(s)	266
PkrI	GCNGC	4 cut(s)	7, 35, 100, 103
PleI	GAGTC	2 cut(s)	290, 298
PluTI	GGCGCC	2 cut(s)	345, 378
PpsI	GAGTC	2 cut(s)	290, 298
PscI	ACATGT	1 cut(s)	276
Psp6I	CCWGG	3 cut(s)	177, 209, 321
PspFI	CCCAGC	1 cut(s)	285
PspGI	CCWGG	3 cut(s)	177, 209, 321
PspN4I	GGNNCC	4 cut(s)	207, 272, 343, 376
PspPI	GGNCC	3 cut(s)	205, 270, 313
RigI	GGCCGGCC	1 cut(s)	169
RsaI	GTAC	3 cut(s)	176, 251, 281
RsaNI	GTAC	3 cut(s)	175, 250, 280
SacII	CCGCGG	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	4 cut(s)	6, 34, 99, 102
Sau96I	GGNCC	3 cut(s)	205, 270, 313
SchI	GAGTC	2 cut(s)	290, 299
ScrFI	CCNGG	5 cut(s)	179, 211, 247, 268, 323
SetI	ASST	7 cut(s)	15, 58, 180, 197, 243, 327, 371
SfaNI	GCATC	1 cut(s)	211
SfoI	GGCGCC	2 cut(s)	343, 376
Sfr303I	CCGCGG	1 cut(s)	99
SgrAI	CRCCGGYG	1 cut(s)	199
SgrBI	CCGCGG	1 cut(s)	99
SinI	GGWCC	2 cut(s)	205, 270
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	8 cut(s)	24, 31, 34, 82, 96, 98, 300, 316
SspDI	GGCGCC	2 cut(s)	341, 374
StyD4I	CCNGG	5 cut(s)	177, 209, 245, 266, 321
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	1 cut(s)	197
TaqI	TCGA	2 cut(s)	120, 219
TasI	AATT	1 cut(s)	156
TauI	GCSGC	2 cut(s)	36, 101
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TseI	GCWGC	2 cut(s)	5, 101
TspDTI	ATGAA	1 cut(s)	158
TspGWI	ACGGA	4 cut(s)	52, 267, 388, 473
VpaK11BI	GGWCC	2 cut(s)	205, 270
XapI	RAATTY	1 cut(s)	156
XceI	RCATGY	2 cut(s)	187, 280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.