Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004968

Physical Location & Seq

Genomic Coordinates Reverse (-)

18634366 .. 18635923

Gene Structure 1558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGTCGATAACCCATACAACACCACCACTGACCATGACACCAACATCAACAATTCCGATTTGGTGTCCTTTGATCACCCAACAAATTGGGACAACAACATTCACGGAGTCCATCGATCAGATGCAGCAACAATTCCCAGATGGTACTACTTCTCCTACTTCTACTCCATACCCACAACCGCCTGACCTTCTCAACCTTTTCACCTTACCCAGATGCTCCCCCTCCTCTCTTCTTCAAAACTCATCCATCACCTTCACAAACACGCTCCCAAAAACCTCGACCTCTTTTGGGTTCCTCGGTGACCTGCCCACCGCGGTTGACACCCCACTGGGGACGGCTTCTTCCGTTCTCTATGACCCACTTTTGCATTTGAACCTGCCTCCACAGCCACCAATGTTCAGGGAACTGCTTCAGTCTTTGCCACATGGGTACACGTTGCCTGGCTCCGGAAATGGGTCTTTGTTCAGTACCGGTGGCGATGAGAGGGAAGGGAGCGGAGGAGGGATTTACCCAGATCATGGCACTATGAATGGGTCTATATTTGAGAATGGAGTGATGGAGTTCTCCAGAGAAATGGGTTCTATTGGAAGGGGAAGAAATCTCAAAGGGTCCAAACACCTTGCCATTGATCGCGGTCGGAGACAGCAGTTGAATGACAAGTTCTTTACCTTGAGGAGTTTGATTCCCAACCCCACCAAGAATGATAGAGCATCAATTGTGGGAGATGCGATTGGTTACATAAACGAGCTTCTGAGGACAGTGGACGAGCTCAAATTGCTGGTGGAGAAGAAAAGGCGTGGGAGAGAGAGGAGCAAGAGGCACAAGACTGAACAAGATGGTGGTGCCGGAGATGATGAGAACTGTAATGTGAAGTTTGAGCCTCGTGACCAGTCCTACAACAACGGCTCTCTGAGGAGCTCGTGGCTGCAAAGGAAATCCAAAGACACCGAGGTCGATATCCGCATTATCCACGACGAGGTTACCATCAAACTGGTGCAGAGGAAGAAGATCAACCTGTTGCTGTCTGTGTCCAGGCTTCTTGATGAGCTGCAGCTTGATCTTCATCATGTTGCTGGTGGCCACATTGGCAATTCCTACAGCTTCTTGTTCAATACCAAGATGTATGAAGGGTCTTGTTTGTATGCAAGTGCTATTGCTGGCAAGTTCATTGAGGTTCTGGACAGACAATATTCAGCAGTTCCACCTACCAGCAGTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042545 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048518 GO:0048522 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

407

Amino Acids

44.92

Weight (kDa)

7.15

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	204 - 250	9.2e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06170 AT1G06170 AT2G31210 AT2G31220 AT2G31220
fragaria_vesca	FvH4_7g02380 FvH4_7g07050
malus_domestica	MD02G1240400.v1.1 MD02G1240500.v1.1 MD07G1076400.v1.1 MD07G1076500.v1.1
prunus_persica	Prupe.2G097200_v2.0.a1 Prupe.2G097200_v2.0.a1 Prupe.2G097400_v2.0.a1
pyrus_communis	pycom02g20560 pycom02g20570 pycom07g06020
rosa_chinensis	RchiOBHm_Chr1g0337011
rosa_laevigata	RLG00000029312
rosa_multiflora	Rmu_co8055130.1_g000001 Rmu_sc0009742.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315050
rosa_rugosa	Rorug01G0130300 Rorug01G0130400 Rorug01G0130400
rosa_samantha	Rh1AG150800 Rh1BG119200 Rh1CG142000 Rh1DG158400
rosa_wichuraiana	Rw1G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	950
Acc36I	ACCTGC	2 cut(s)	312, 384
AccB1I	GGYRCC	1 cut(s)	842
AccB7I	CCANNNNNTGG	1 cut(s)	518
AccBSI	CCGCTC	1 cut(s)	495
AccII	CGCG	2 cut(s)	314, 633
AccIII	TCCGGA	1 cut(s)	446
AciI	CCGC	6 cut(s)	179, 312, 314, 495, 633, 961
AcoI	YGGCCR	1 cut(s)	1078
AcuI	CTGAAG	1 cut(s)	395
AfaI	GTAC	3 cut(s)	145, 431, 469
AfiI	CCNNNNNNNGG	6 cut(s)	288, 330, 446, 453, 518, 976
AflIII	ACRYGT	1 cut(s)	432
AgeI	ACCGGT	1 cut(s)	470
AgsI	TTSAA	4 cut(s)	236, 373, 652, 1111
AjnI	CCWGG	2 cut(s)	439, 1031
AluBI	AGCT	6 cut(s)	748, 769, 918, 1048, 1054, 1101
AluI	AGCT	6 cut(s)	748, 769, 918, 1048, 1054, 1101
Alw21I	GWGCWC	2 cut(s)	771, 920
Alw26I	GTCTC	1 cut(s)	634
Aor13HI	TCCGGA	1 cut(s)	446
AoxI	GGCC	1 cut(s)	1078
ApeKI	GCWGC	4 cut(s)	124, 925, 1048, 1051
AsiGI	ACCGGT	1 cut(s)	470
Asp700I	GAANNNNTTC	1 cut(s)	408
AspS9I	GGNCC	1 cut(s)	609
AsuHPI	GGTGA	4 cut(s)	67, 193, 241, 311
AvaII	GGWCC	1 cut(s)	609
BalI	TGGCCA	1 cut(s)	1080
BanI	GGYRCC	1 cut(s)	842
BanII	GRGCYC	2 cut(s)	771, 920
BauI	CACGAG	2 cut(s)	882, 919
Bbv12I	GWGCWC	2 cut(s)	771, 920
BbvI	GCAGC	4 cut(s)	136, 912, 1035, 1063
BccI	CCATC	6 cut(s)	119, 134, 254, 550, 830, 992
BceAI	ACGGC	2 cut(s)	351, 919
BciT130I	CCWGG	2 cut(s)	441, 1033
BclI	TGATCA	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	634
BfmI	CTRYAG	2 cut(s)	1049, 1096
BfuAI	ACCTGC	2 cut(s)	312, 384
BglI	GCCNNNNNGGC	1 cut(s)	1086
BisI	GCNGC	4 cut(s)	125, 926, 1049, 1052
BlsI	GCNGC	4 cut(s)	126, 927, 1050, 1053
Bme1390I	CCNGG	2 cut(s)	441, 1033
Bme18I	GGWCC	1 cut(s)	609
BmgT120I	GGNCC	1 cut(s)	609
BmiI	GGNNCC	4 cut(s)	293, 445, 610, 844
BmrFI	CCNGG	2 cut(s)	441, 1033
BmrI	ACTGGG	1 cut(s)	338
BmsI	GCATC	4 cut(s)	111, 203, 715, 719
BmuI	ACTGGG	1 cut(s)	338
BpmI	CTGGAG	1 cut(s)	550
BpuEI	CTTGAG	1 cut(s)	691
Bsa29I	ATCGAT	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	1062
BsaJI	CCNNGG	3 cut(s)	295, 312, 948
BsaWI	WCCGGW	2 cut(s)	446, 470
BsaXI	ACNNNNNCTCC	4 cut(s)	136, 148, 166, 178
Bsc4I	CCNNNNNNNGG	6 cut(s)	288, 330, 446, 453, 518, 976
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	3 cut(s)	333, 889, 996
Bse8I	GATNNNNATC	1 cut(s)	1062
BseAI	TCCGGA	1 cut(s)	446
BseBI	CCWGG	2 cut(s)	441, 1033
BseCI	ATCGAT	1 cut(s)	114
BseDI	CCNNGG	3 cut(s)	295, 312, 948
BseGI	GGATG	1 cut(s)	242
BseJI	GATNNNNATC	1 cut(s)	1062
BseLI	CCNNNNNNNGG	6 cut(s)	288, 330, 446, 453, 518, 976
BseMII	CTCAG	2 cut(s)	743, 902
BseNI	ACTGG	3 cut(s)	333, 889, 996
BseRI	GAGGAG	5 cut(s)	214, 513, 688, 823, 928
BseXI	GCAGC	4 cut(s)	136, 912, 1035, 1063
BsgI	GTGCAG	1 cut(s)	1016
Bsh1236I	CGCG	2 cut(s)	314, 633
Bsh1285I	CGRYCG	1 cut(s)	637
BshFI	GGCC	1 cut(s)	1080
BshNI	GGYRCC	1 cut(s)	842
BshTI	ACCGGT	1 cut(s)	470
BshVI	ATCGAT	1 cut(s)	114
BsiEI	CGRYCG	1 cut(s)	637
BsiHKAI	GWGCWC	2 cut(s)	771, 920
BsiSI	CCGG	3 cut(s)	447, 471, 846
BslFI	GGGAC	2 cut(s)	103, 346
BslI	CCNNNNNNNGG	6 cut(s)	288, 330, 446, 453, 518, 976
BsmAI	GTCTC	1 cut(s)	634
BsmFI	GGGAC	2 cut(s)	103, 346
BsnI	GGCC	1 cut(s)	1080
Bsp1286I	GDGCHC	2 cut(s)	771, 920
Bsp13I	TCCGGA	1 cut(s)	446
Bsp143I	GATC	6 cut(s)	72, 115, 514, 628, 1008, 1057
BspACI	CCGC	6 cut(s)	179, 312, 314, 495, 633, 961
BspANI	GGCC	1 cut(s)	1080
BspCNI	CTCAG	2 cut(s)	744, 903
BspDI	ATCGAT	1 cut(s)	114
BspEI	TCCGGA	1 cut(s)	446
BspFNI	CGCG	2 cut(s)	314, 633
BspLI	GGNNCC	4 cut(s)	293, 445, 610, 844
BspMAI	CTGCAG	1 cut(s)	1053
BspMI	ACCTGC	2 cut(s)	312, 384
BspT107I	GGYRCC	1 cut(s)	842
BsrBI	CCGCTC	1 cut(s)	495
BsrFI	RCCGGY	1 cut(s)	470
BsrI	ACTGG	3 cut(s)	333, 889, 996
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	3 cut(s)	295, 312, 948
BssMI	GATC	6 cut(s)	72, 115, 514, 628, 1008, 1057
BssSI	CACGAG	2 cut(s)	882, 919
Bst2BI	CACGAG	2 cut(s)	882, 919
Bst2UI	CCWGG	2 cut(s)	441, 1033
Bst4CI	ACNGT	2 cut(s)	760, 863
Bst6I	CTCTTC	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	1159
BstDEI	CTNAG	2 cut(s)	752, 911
BstDSI	CCRYGG	1 cut(s)	312
BstEII	GGTNACC	2 cut(s)	299, 979
BstF5I	GGATG	1 cut(s)	242
BstFNI	CGCG	2 cut(s)	314, 633
BstKTI	GATC	6 cut(s)	75, 118, 517, 631, 1011, 1060
BstMAI	GTCTC	1 cut(s)	634
BstMBI	GATC	6 cut(s)	72, 115, 514, 628, 1008, 1057
BstMCI	CGRYCG	1 cut(s)	637
BstMWI	GCNNNNNNNGC	3 cut(s)	385, 775, 1086
BstNI	CCWGG	2 cut(s)	441, 1033
BstPI	GGTNACC	2 cut(s)	299, 979
BstSCI	CCNGG	2 cut(s)	439, 1031
BstSFI	CTRYAG	2 cut(s)	1049, 1096
BstUI	CGCG	2 cut(s)	314, 633
BstV1I	GCAGC	4 cut(s)	136, 912, 1035, 1063
BstXI	CCANNNNNNTGG	3 cut(s)	86, 574, 991
Bsu15I	ATCGAT	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	1080
BsuTUI	ATCGAT	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	242
BtsIMutI	CAGTG	3 cut(s)	26, 326, 765
BveI	ACCTGC	2 cut(s)	312, 384
Cac8I	GCNNGC	1 cut(s)	1159
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	609
Cfr42I	CCGCGG	1 cut(s)	315
ClaI	ATCGAT	1 cut(s)	114
Csp6I	GTAC	3 cut(s)	144, 430, 468
CspAI	ACCGGT	1 cut(s)	470
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviAII	CATG	4 cut(s)	34, 425, 518, 1067
CviQI	GTAC	3 cut(s)	144, 430, 468
DdeI	CTNAG	2 cut(s)	752, 911
DpnI	GATC	6 cut(s)	74, 117, 516, 630, 1010, 1059
DpnII	GATC	6 cut(s)	72, 115, 514, 628, 1008, 1057
DrdI	GACNNNNNNGTC	1 cut(s)	950
DseDI	GACNNNNNNGTC	1 cut(s)	950
EaeI	YGGCCR	1 cut(s)	1078
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Ecl136II	GAGCTC	2 cut(s)	769, 918
Eco24I	GRGCYC	2 cut(s)	771, 920
Eco32I	GATATC	1 cut(s)	958
Eco47I	GGWCC	1 cut(s)	609
Eco53kI	GAGCTC	2 cut(s)	769, 918
Eco57I	CTGAAG	1 cut(s)	395
Eco91I	GGTNACC	2 cut(s)	299, 979
EcoICRI	GAGCTC	2 cut(s)	769, 918
EcoO65I	GGTNACC	2 cut(s)	299, 979
EcoRII	CCWGG	2 cut(s)	439, 1031
EcoRV	GATATC	1 cut(s)	958
EcoT38I	GRGCYC	2 cut(s)	771, 920
FaeI	CATG	4 cut(s)	37, 428, 521, 1070
FaqI	GGGAC	2 cut(s)	103, 346
FatI	CATG	4 cut(s)	33, 424, 517, 1066
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	4 cut(s)	125, 926, 1049, 1052
FokI	GGATG	1 cut(s)	229
FriOI	GRGCYC	2 cut(s)	771, 920
Fsp4HI	GCNGC	4 cut(s)	125, 926, 1049, 1052
GluI	GCNGC	4 cut(s)	125, 926, 1049, 1052
GsuI	CTGGAG	1 cut(s)	550
HaeIII	GGCC	1 cut(s)	1080
HapII	CCGG	3 cut(s)	447, 471, 846
Hin1II	CATG	4 cut(s)	37, 428, 521, 1070
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	2 cut(s)	107, 682
HpaII	CCGG	3 cut(s)	447, 471, 846
HphI	GGTGA	4 cut(s)	67, 193, 241, 311
Hpy166II	GTNNAC	3 cut(s)	319, 432, 763
Hpy188I	TCNGA	5 cut(s)	57, 120, 639, 753, 912
Hpy188III	TCNNGA	5 cut(s)	447, 567, 884, 1040, 1178
Hpy8I	GTNNAC	3 cut(s)	319, 432, 763
Hpy99I	CGWCG	1 cut(s)	977
HpyAV	CCTTC	5 cut(s)	197, 262, 482, 582, 1121
HpyCH4III	ACNGT	2 cut(s)	760, 863
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	6 cut(s)	124, 367, 928, 997, 1051, 1145
HpyF10VI	GCNNNNNNNGC	3 cut(s)	385, 775, 1086
HpyF3I	CTNAG	2 cut(s)	752, 911
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	4 cut(s)	37, 428, 521, 1070
Kpn2I	TCCGGA	1 cut(s)	446
Ksp22I	TGATCA	1 cut(s)	72
KspI	CCGCGG	1 cut(s)	315
Kzo9I	GATC	6 cut(s)	72, 115, 514, 628, 1008, 1057
LmnI	GCTCC	6 cut(s)	221, 270, 449, 492, 810, 915
Lsp1109I	GCAGC	4 cut(s)	136, 912, 1035, 1063
LweI	GCATC	4 cut(s)	111, 203, 715, 719
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	4 cut(s)	299, 734, 884, 979
MalI	GATC	6 cut(s)	74, 117, 516, 630, 1010, 1059
MbiI	CCGCTC	1 cut(s)	495
MboI	GATC	6 cut(s)	72, 115, 514, 628, 1008, 1057
MboII	GAAGA	8 cut(s)	221, 224, 333, 606, 799, 1015, 1018, 1052
MfeI	CAATTG	1 cut(s)	714
MhlI	GDGCHC	2 cut(s)	771, 920
MlsI	TGGCCA	1 cut(s)	1080
MluCI	AATT	6 cut(s)	51, 84, 131, 714, 773, 1090
MluNI	TGGCCA	1 cut(s)	1080
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	617
Mox20I	TGGCCA	1 cut(s)	1080
MroI	TCCGGA	1 cut(s)	446
MroXI	GAANNNNTTC	1 cut(s)	408
MscI	TGGCCA	1 cut(s)	1080
Msp20I	TGGCCA	1 cut(s)	1080
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	3 cut(s)	447, 471, 846
MspR9I	CCNGG	2 cut(s)	441, 1033
MunI	CAATTG	1 cut(s)	714
MvaI	CCWGG	2 cut(s)	441, 1033
MvnI	CGCG	2 cut(s)	314, 633
MwoI	GCNNNNNNNGC	3 cut(s)	385, 775, 1086
NdeII	GATC	6 cut(s)	72, 115, 514, 628, 1008, 1057
NlaIII	CATG	4 cut(s)	37, 428, 521, 1070
NlaIV	GGNNCC	4 cut(s)	293, 445, 610, 844
NmuCI	GTSAC	2 cut(s)	299, 884
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	682
PflMI	CCANNNNNTGG	1 cut(s)	518
PinAI	ACCGGT	1 cut(s)	470
PkrI	GCNGC	4 cut(s)	126, 927, 1050, 1053
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Psp124BI	GAGCTC	2 cut(s)	771, 920
Psp6I	CCWGG	2 cut(s)	439, 1031
PspEI	GGTNACC	2 cut(s)	299, 979
PspGI	CCWGG	2 cut(s)	439, 1031
PspN4I	GGNNCC	4 cut(s)	293, 445, 610, 844
PspPI	GGNCC	1 cut(s)	609
PstI	CTGCAG	1 cut(s)	1053
RsaI	GTAC	3 cut(s)	145, 431, 469
RsaNI	GTAC	3 cut(s)	144, 430, 468
SacI	GAGCTC	2 cut(s)	771, 920
SacII	CCGCGG	1 cut(s)	315
SatI	GCNGC	4 cut(s)	125, 926, 1049, 1052
Sau3AI	GATC	6 cut(s)	72, 115, 514, 628, 1008, 1057
Sau96I	GGNCC	1 cut(s)	609
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	441, 1033
SduI	GDGCHC	2 cut(s)	771, 920
SfaNI	GCATC	4 cut(s)	111, 203, 715, 719
SfcI	CTRYAG	2 cut(s)	1049, 1096
Sfr303I	CCGCGG	1 cut(s)	315
SgrBI	CCGCGG	1 cut(s)	315
SinI	GGWCC	1 cut(s)	609
SmlI	CTYRAG	1 cut(s)	670
SmoI	CTYRAG	1 cut(s)	670
Sse9I	AATT	6 cut(s)	51, 84, 131, 714, 773, 1090
SsiI	CCGC	6 cut(s)	179, 312, 314, 495, 633, 961
SspI	AATATT	1 cut(s)	1190
SstI	GAGCTC	2 cut(s)	771, 920
StyD4I	CCNGG	2 cut(s)	439, 1031
TaaI	ACNGT	2 cut(s)	760, 863
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	4 cut(s)	5, 114, 278, 954
TasI	AATT	6 cut(s)	51, 84, 131, 714, 773, 1090
TfiI	GAWTC	1 cut(s)	682
TscAI	CASTG	3 cut(s)	33, 333, 765
TseFI	GTSAC	2 cut(s)	299, 884
TseI	GCWGC	4 cut(s)	124, 925, 1048, 1051
Tsp45I	GTSAC	2 cut(s)	299, 884
TspDTI	ATGAA	4 cut(s)	542, 1052, 1140, 1156
TspGWI	ACGGA	2 cut(s)	119, 334
TspRI	CASTG	3 cut(s)	33, 333, 765
Van91I	CCANNNNNTGG	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	609
XmnI	GAANNNNTTC	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.