Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006940

Physical Location & Seq

Genomic Coordinates Reverse (-)

23487690 .. 23488709

Gene Structure 1020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTCTAGGTATTTTCTTTCCTTTATATCATGTAGGGCTAGCATTACTCCAGGTACTGTGTTGATCATTCTTGCCGGGAGGTTCATGGGAAAGAGGGTTGTGTTTCTGAAGCAGCTTTCATCTGGCTTGCTGTTGGTCACTGGACCATTCAAGATTAACGGTGTTCCTCTAAGACGTGTGAACCAGTCTTACGTGATTGGAGCTCAGACTAAGATTGACATCTCTAAGGTTAATGCGGTTAAGTTTGATGACAAGTATTTTGCAAAGGAAGTCCAGAAGAAAAAGAGAAGGGGAGAAGGCGAATTCTTTGAAGCGGAGGAGGACGAGAATGTACTTCCCCAGGAGAAAAAAGATGACCAGAAGGCTGTTGATACACCCTTGATTAGATGCATCAACAGAATTGCCTATATGAAGGAGTATTTAGCTGCAAGGTTTTCTCTCAAGCAAGGCATGAAGCCTCATGAGCTTGTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

159

Amino Acids

18.05

Weight (kDa)

9.78

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e	PF01159	52 - 158	9.2e-37	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006940)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17061
malus_domestica	MD02G1071700.v1.1 MD08G1183300.v1.1 MD10G1116300.v1.1
pyrus_communis	pycom02g05550 pycom02g25640
rosa_chinensis	RchiOBHm_Chr3g0463691 RchiOBHm_Chr3g0488461 RchiOBHm_Chr4g0387091 RchiOBHm_Chr4g0393421 RchiOBHm_Chr5g0070501 RchiOBHm_Chr7g0200661
rosa_multiflora	Rmu_co8395177.1_g000001 Rmu_sc0000276.1_g000009 Rmu_sc0000577.1_g000015 Rmu_sc0004908.1_g000012 Rmu_sc0008393.1_g000001 Rmu_sc0009422.1_g000003 Rmu_sc0013203.1_g000003 Rmu_sc0018791.1_g000001 Rmu_sc0040893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141110 Rroxscaffold_5G00365540 Rroxscaffold_6G00404100 Rroxscaffold_7G00190480 Rroxscaffold_7G00197650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	236, 314
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	2 cut(s)	55, 333
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	2 cut(s)	151, 311
AjiI	CACGTC	1 cut(s)	176
AjnI	CCWGG	2 cut(s)	49, 339
AluBI	AGCT	4 cut(s)	115, 203, 425, 466
AluI	AGCT	4 cut(s)	115, 203, 425, 466
Alw21I	GWGCWC	1 cut(s)	205
AlwNI	CAGNNNCTG	1 cut(s)	56
ApeKI	GCWGC	2 cut(s)	112, 425
ApoI	RAATTY	1 cut(s)	302
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AspS9I	GGNCC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	76
AsuNHI	GCTAGC	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	2 cut(s)	124, 412
BciT130I	CCWGG	2 cut(s)	51, 341
BclI	TGATCA	1 cut(s)	63
BcnI	CCSGG	1 cut(s)	76
BfaI	CTAG	3 cut(s)	6, 39, 475
BisI	GCNGC	2 cut(s)	113, 426
BlsI	GCNGC	2 cut(s)	114, 427
Bme1390I	CCNGG	3 cut(s)	51, 76, 341
Bme18I	GGWCC	1 cut(s)	143
BmgBI	CACGTC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	143
BmrFI	CCNGG	3 cut(s)	51, 76, 341
BmsI	GCATC	2 cut(s)	377, 399
BmtI	GCTAGC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	425
BpuMI	CCSGG	1 cut(s)	76
BsaAI	YACGTR	1 cut(s)	193
BsaBI	GATNNNNATC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	339
Bse1I	ACTGG	2 cut(s)	145, 184
Bse8I	GATNNNNATC	1 cut(s)	218
BseBI	CCWGG	2 cut(s)	51, 341
BseDI	CCNNGG	1 cut(s)	339
BseJI	GATNNNNATC	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	2 cut(s)	145, 184
BseRI	GAGGAG	1 cut(s)	332
BseXI	GCAGC	2 cut(s)	124, 412
BsiHKAI	GWGCWC	1 cut(s)	205
BsiSI	CCGG	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	2 cut(s)	236, 314
BspCNI	CTCAG	1 cut(s)	217
BspHI	TCATGA	1 cut(s)	460
BspOI	GCTAGC	1 cut(s)	42
BsrI	ACTGG	2 cut(s)	145, 184
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	1 cut(s)	63
Bst2UI	CCWGG	2 cut(s)	51, 341
Bst4CI	ACNGT	2 cut(s)	58, 161
BstBAI	YACGTR	1 cut(s)	193
BstC8I	GCNNGC	2 cut(s)	40, 128
BstDEI	CTNAG	4 cut(s)	170, 204, 210, 225
BstKTI	GATC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	463
BstNI	CCWGG	2 cut(s)	51, 341
BstSCI	CCNGG	3 cut(s)	49, 74, 339
BstV1I	GCAGC	2 cut(s)	124, 412
BtrI	CACGTC	1 cut(s)	176
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	2 cut(s)	40, 128
CaiI	CAGNNNCTG	1 cut(s)	56
CciI	TCATGA	1 cut(s)	460
Cfr13I	GGNCC	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	54, 332
CviAII	CATG	4 cut(s)	30, 85, 451, 461
CviJI	RGCY	8 cut(s)	38, 115, 126, 203, 365, 425, 457, 466
CviKI_1	RGCY	8 cut(s)	38, 115, 126, 203, 365, 425, 457, 466
CviQI	GTAC	2 cut(s)	54, 332
DdeI	CTNAG	4 cut(s)	170, 204, 210, 225
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Ecl136II	GAGCTC	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	143
Eco53kI	GAGCTC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	203
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	49, 339
EcoT22I	ATGCAT	1 cut(s)	392
EcoT38I	GRGCYC	1 cut(s)	205
FaeI	CATG	4 cut(s)	33, 88, 454, 464
FaiI	YATR	7 cut(s)	26, 31, 86, 408, 410, 452, 462
FatI	CATG	4 cut(s)	29, 84, 450, 460
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	113, 426
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	2 cut(s)	113, 426
FspBI	CTAG	3 cut(s)	6, 39, 475
GluI	GCNGC	2 cut(s)	113, 426
GsuI	CTGGAG	1 cut(s)	33
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	4 cut(s)	33, 88, 454, 464
HpaII	CCGG	1 cut(s)	75
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	108, 207
Hpy188III	TCNNGA	3 cut(s)	151, 274, 461
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	4 cut(s)	282, 290, 355, 406
HpyCH4III	ACNGT	2 cut(s)	58, 161
HpyCH4IV	ACGT	2 cut(s)	175, 192
HpyCH4V	TGCA	3 cut(s)	263, 390, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	463
HpyF3I	CTNAG	4 cut(s)	170, 204, 210, 225
HpySE526I	ACGT	2 cut(s)	175, 192
Hsp92II	CATG	4 cut(s)	33, 88, 454, 464
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	63
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	2 cut(s)	124, 412
LweI	GCATC	2 cut(s)	377, 399
MaeI	CTAG	3 cut(s)	6, 39, 475
MaeII	ACGT	2 cut(s)	175, 192
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	2 cut(s)	302, 399
MnlI	CCTC	6 cut(s)	72, 87, 177, 310, 313, 468
Mph1103I	ATGCAT	1 cut(s)	392
MseI	TTAA	3 cut(s)	156, 231, 240
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	3 cut(s)	51, 76, 341
MvaI	CCWGG	2 cut(s)	51, 341
MwoI	GCNNNNNNNGC	1 cut(s)	463
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	1 cut(s)	63
NheI	GCTAGC	1 cut(s)	38
NlaIII	CATG	4 cut(s)	33, 88, 454, 464
NmuCI	GTSAC	1 cut(s)	136
NsiI	ATGCAT	1 cut(s)	392
PagI	TCATGA	1 cut(s)	460
PkrI	GCNGC	2 cut(s)	114, 427
Ppu21I	YACGTR	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	205
Psp6I	CCWGG	2 cut(s)	49, 339
PspGI	CCWGG	2 cut(s)	49, 339
PspPI	GGNCC	1 cut(s)	143
PsrI	GAACNNNNNNTAC	2 cut(s)	173, 205
PstNI	CAGNNNCTG	1 cut(s)	56
RsaI	GTAC	2 cut(s)	55, 333
RsaNI	GTAC	2 cut(s)	54, 332
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	3 cut(s)	156, 231, 240
SatI	GCNGC	2 cut(s)	113, 426
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	143
ScrFI	CCNGG	3 cut(s)	51, 76, 341
SduI	GDGCHC	1 cut(s)	205
SfaNI	GCATC	2 cut(s)	377, 399
SinI	GGWCC	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	2 cut(s)	302, 399
SsiI	CCGC	2 cut(s)	236, 314
SspMI	CTAG	3 cut(s)	6, 39, 475
SstI	GAGCTC	1 cut(s)	205
StyD4I	CCNGG	3 cut(s)	49, 74, 339
TaaI	ACNGT	2 cut(s)	58, 161
TaiI	ACGT	2 cut(s)	178, 195
TasI	AATT	2 cut(s)	302, 399
TatI	WGTACW	1 cut(s)	331
Tru1I	TTAA	3 cut(s)	156, 231, 240
Tru9I	TTAA	3 cut(s)	156, 231, 240
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	2 cut(s)	112, 425
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	4 cut(s)	73, 108, 425, 467
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	1 cut(s)	302
XspI	CTAG	3 cut(s)	6, 39, 475
Zsp2I	ATGCAT	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.