pycom03g04770

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0003044
Physical Location & Seq
Reverse (-)
3704619 .. 3705742
1124 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 948 bp
ATGCCCTTTTGTTTGTTTCTTTTCATAAACATTGACCTACTGGCTACTGTGCTTCCCAACTTGCCTTGCCTTATAAGCACTCTCTTCCCCCATTCTCAAACTTTCTTTTCTTTCTCCTTCTCTCCTTTCCTCTCTTTGCTCCCAACTTCATTCGGACAATATATAACTAAATATATGTCCATAGGAAGGGAGATCACAACCTTCGATGAGATAGGAAAGAAGATCAGGAGAGAAAATGATGCATCTGTTGTTGAAATGGGAATCATGAGCACTACTCGAATTTCGTCATCATCGTCATCGTCGTTTGGTGTTCCTCATCAAGGGATGACGATGATGAGTACAACAACTTTGAACACAATCACACCTTGTGCTGCGTGTAAGCTCTTGAGAAGAAGATGTGCTGAAGAGTGCCCTTTCTCTCCTTACTTCTCTCCACATGAACCCCAGAAATTTTCAGCTGTTCACAAAGTCTTTGGTGCAAGCAATGTTTCCAAGATGCTATTGGAAGTGGCTGAGAATCAAAGAGCTGATGCAGCCAATAGTCTAGTTTATGAAGCAAATCTGAGGCTGAGAGACCCAGTGTATGGGTGCATGGGTGTAATTTCAGCCTTGCAGCAACAAATTCAATCTCTACAAGCTGAACTCAATGCAGTAAGGACTCAGATATTGAGACACAAATTCAAAGAGGCCACTAGTCCCAGTATCGTTTCTCCTAGGGGTATTATTCACCATGCTGCTTTGGTTTCTAATTCTGGGATGGTGTCCTATGCGGCGCAACCACAAGCGATTTCTCCACTACCGCCGCCGCAACTACCATCAGTATCAGCTCCGTCTTCAGTTGTTTTTTCTTCATCGTCTTCGTCTTCAGCTTCTTCTTTATACAATCCATCCACAAACACGACAGGCTATAGCTCCATCTCAAGCAAAAATGTTCCGTATTTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

316

Amino Acids

34.31

Weight (kDa)

8.83

Isoelectric Point (pI)

71.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 122 - 219 4.4e-40 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 74
AccB7I CCANNNNNTGG 1 cut(s) 584
AciI CCGC 4 cut(s) 770, 800, 803, 806
AcsI RAATTY 4 cut(s) 279, 449, 621, 677
AcuI CTGAAG 3 cut(s) 423, 819, 849
AdeI CACNNNGTG 1 cut(s) 368
AfaI GTAC 1 cut(s) 340
AfiI CCNNNNNNNGG 3 cut(s) 186, 320, 584
AgsI TTSAA 4 cut(s) 254, 352, 626, 682
AhlI ACTAGT 1 cut(s) 692
AluBI AGCT 7 cut(s) 382, 458, 527, 638, 827, 869, 912
AluI AGCT 7 cut(s) 382, 458, 527, 638, 827, 869, 912
Alw21I GWGCWC 1 cut(s) 272
Alw26I GTCTC 2 cut(s) 567, 664
AoxI GGCC 1 cut(s) 687
ApeKI GCWGC 4 cut(s) 371, 533, 613, 734
ApoI RAATTY 4 cut(s) 279, 449, 621, 677
AspA2I CCTAGG 1 cut(s) 713
AspLEI GCGC 1 cut(s) 775
AsuHPI GGTGA 1 cut(s) 719
AvrII CCTAGG 1 cut(s) 713
BaeGI GKGCMC 1 cut(s) 413
BbsI GAAGAC 3 cut(s) 825, 849, 855
Bbv12I GWGCWC 1 cut(s) 272
BbvI GCAGC 4 cut(s) 358, 545, 625, 721
BccI CCATC 4 cut(s) 751, 823, 895, 923
BcoDI GTCTC 2 cut(s) 567, 664
BcuI ACTAGT 1 cut(s) 692
BfaI CTAG 3 cut(s) 545, 693, 714
BfmI CTRYAG 1 cut(s) 907
BisI GCNGC 7 cut(s) 372, 534, 614, 735, 771, 803, 806
BlnI CCTAGG 1 cut(s) 713
BlsI GCNGC 7 cut(s) 373, 535, 615, 736, 772, 804, 807
BmrI ACTGGG 2 cut(s) 572, 693
BmsI GCATC 4 cut(s) 229, 251, 486, 520
BmuI ACTGGG 2 cut(s) 572, 693
BpiI GAAGAC 3 cut(s) 825, 849, 855
BplI GAGNNNNNCTC 2 cut(s) 259, 291
BpuEI CTTGAG 2 cut(s) 406, 904
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 1 cut(s) 713
Bsc4I CCNNNNNNNGG 3 cut(s) 186, 320, 584
Bse1I ACTGG 3 cut(s) 45, 578, 699
Bse3DI GCAATG 1 cut(s) 490
BseDI CCNNGG 1 cut(s) 713
BseGI GGATG 3 cut(s) 330, 762, 887
BseLI CCNNNNNNNGG 3 cut(s) 186, 320, 584
BseMI GCAATG 1 cut(s) 490
BseMII CTCAG 4 cut(s) 504, 554, 560, 674
BseNI ACTGG 3 cut(s) 45, 578, 699
BseSI GKGCMC 1 cut(s) 413
BseXI GCAGC 4 cut(s) 358, 545, 625, 721
BshFI GGCC 1 cut(s) 689
BsiHKAI GWGCWC 1 cut(s) 272
BslFI GGGAC 1 cut(s) 681
BslI CCNNNNNNNGG 3 cut(s) 186, 320, 584
BsmAI GTCTC 2 cut(s) 567, 664
BsmFI GGGAC 1 cut(s) 681
BsnI GGCC 1 cut(s) 689
Bso31I GGTCTC 1 cut(s) 567
Bsp1286I GDGCHC 2 cut(s) 272, 413
Bsp143I GATC 2 cut(s) 192, 222
BspACI CCGC 4 cut(s) 770, 800, 803, 806
BspANI GGCC 1 cut(s) 689
BspCNI CTCAG 4 cut(s) 505, 555, 561, 673
BspHI TCATGA 1 cut(s) 264
BspTNI GGTCTC 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 490
BsrI ACTGG 3 cut(s) 45, 578, 699
BssECI CCNNGG 1 cut(s) 713
BssMI GATC 2 cut(s) 192, 222
BssT1I CCWWGG 1 cut(s) 713
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 2 cut(s) 89, 399
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 4 cut(s) 513, 563, 569, 660
BstENI CCTNNNNNAGG 1 cut(s) 318
BstF5I GGATG 3 cut(s) 330, 762, 887
BstHHI GCGC 1 cut(s) 775
BstKTI GATC 2 cut(s) 195, 225
BstMAI GTCTC 2 cut(s) 567, 664
BstMBI GATC 2 cut(s) 192, 222
BstMWI GCNNNNNNNGC 2 cut(s) 75, 533
BstSFI CTRYAG 1 cut(s) 907
BstSLI GKGCMC 1 cut(s) 413
BstV1I GCAGC 4 cut(s) 358, 545, 625, 721
BstV2I GAAGAC 3 cut(s) 825, 849, 855
BsuRI GGCC 1 cut(s) 689
BtsCI GGATG 3 cut(s) 330, 762, 887
BtsIMutI CAGTG 1 cut(s) 585
Cac8I GCNNGC 1 cut(s) 481
CciI TCATGA 1 cut(s) 264
CfoI GCGC 1 cut(s) 775
Csp6I GTAC 1 cut(s) 339
CviAII CATG 4 cut(s) 265, 437, 592, 731
CviQI GTAC 1 cut(s) 339
DdeI CTNAG 4 cut(s) 513, 563, 569, 660
DpnI GATC 2 cut(s) 194, 224
DpnII GATC 2 cut(s) 192, 222
DraIII CACNNNGTG 1 cut(s) 368
Eam1104I CTCTTC 2 cut(s) 89, 399
EarI CTCTTC 2 cut(s) 89, 399
Eco130I CCWWGG 1 cut(s) 713
Eco31I GGTCTC 1 cut(s) 567
Eco57I CTGAAG 3 cut(s) 423, 819, 849
EcoNI CCTNNNNNAGG 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 713
EcoT22I ATGCAT 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 713
FaeI CATG 4 cut(s) 268, 440, 595, 734
FaqI GGGAC 1 cut(s) 681
FatI CATG 4 cut(s) 264, 436, 591, 730
Fnu4HI GCNGC 7 cut(s) 372, 534, 614, 735, 771, 803, 806
FokI GGATG 3 cut(s) 337, 769, 874
Fsp4HI GCNGC 7 cut(s) 372, 534, 614, 735, 771, 803, 806
FspBI CTAG 3 cut(s) 545, 693, 714
GlaI GCGC 1 cut(s) 774
GluI GCNGC 7 cut(s) 372, 534, 614, 735, 771, 803, 806
HaeIII GGCC 1 cut(s) 689
HhaI GCGC 1 cut(s) 775
Hin1II CATG 4 cut(s) 268, 440, 595, 734
Hin6I GCGC 1 cut(s) 773
HinP1I GCGC 1 cut(s) 773
HinfI GANTC 3 cut(s) 261, 517, 658
HphI GGTGA 1 cut(s) 719
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 3 cut(s) 155, 564, 663
Hpy188III TCNNGA 3 cut(s) 226, 265, 385
Hpy8I GTNNAC 1 cut(s) 463
Hpy99I CGWCG 1 cut(s) 304
HpyAV CCTTC 3 cut(s) 127, 180, 211
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 6 cut(s) 242, 479, 533, 591, 613, 650
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 533
HpyF3I CTNAG 4 cut(s) 513, 563, 569, 660
Hsp92II CATG 4 cut(s) 268, 440, 595, 734
HspAI GCGC 1 cut(s) 773
Kzo9I GATC 2 cut(s) 192, 222
LmnI GCTCC 3 cut(s) 144, 832, 917
LpnPI CCDG 7 cut(s) 26, 211, 458, 591, 712, 738, 888
Lsp1109I GCAGC 4 cut(s) 358, 545, 625, 721
LweI GCATC 4 cut(s) 229, 251, 486, 520
MaeI CTAG 3 cut(s) 545, 693, 714
MalI GATC 2 cut(s) 194, 224
MboI GATC 2 cut(s) 192, 222
MhlI GDGCHC 2 cut(s) 272, 413
MluCI AATT 6 cut(s) 279, 449, 600, 621, 677, 748
MlyI GAGTC 1 cut(s) 652
MnlI CCTC 4 cut(s) 140, 324, 558, 679
Mph1103I ATGCAT 1 cut(s) 244
MseI TTAA 1 cut(s) 946
MspA1I CMGCKG 1 cut(s) 458
MwoI GCNNNNNNNGC 2 cut(s) 75, 533
NdeII GATC 2 cut(s) 192, 222
NlaIII CATG 4 cut(s) 268, 440, 595, 734
NsiI ATGCAT 1 cut(s) 244
PagI TCATGA 1 cut(s) 264
PcsI WCGNNNNNNNCGW 2 cut(s) 290, 299
PfeI GAWTC 2 cut(s) 261, 517
PflMI CCANNNNNTGG 1 cut(s) 584
PkrI GCNGC 7 cut(s) 373, 535, 615, 736, 772, 804, 807
PleI GAGTC 1 cut(s) 652
PpsI GAGTC 1 cut(s) 652
PsiI TTATAA 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
SaqAI TTAA 1 cut(s) 946
SatI GCNGC 7 cut(s) 372, 534, 614, 735, 771, 803, 806
Sau3AI GATC 2 cut(s) 192, 222
SchI GAGTC 1 cut(s) 652
SduI GDGCHC 2 cut(s) 272, 413
SfaNI GCATC 4 cut(s) 229, 251, 486, 520
SfcI CTRYAG 1 cut(s) 907
SmlI CTYRAG 2 cut(s) 385, 919
SmoI CTYRAG 2 cut(s) 385, 919
SpeI ACTAGT 1 cut(s) 692
Sse9I AATT 6 cut(s) 279, 449, 600, 621, 677, 748
SsiI CCGC 4 cut(s) 770, 800, 803, 806
SspMI CTAG 3 cut(s) 545, 693, 714
StyI CCWWGG 1 cut(s) 713
TaaI ACNGT 1 cut(s) 49
TaqI TCGA 2 cut(s) 204, 277
TasI AATT 6 cut(s) 279, 449, 600, 621, 677, 748
TatI WGTACW 1 cut(s) 338
TauI GCSGC 3 cut(s) 773, 805, 808
TfiI GAWTC 2 cut(s) 261, 517
Tru1I TTAA 1 cut(s) 946
Tru9I TTAA 1 cut(s) 946
TscAI CASTG 1 cut(s) 585
TseI GCWGC 4 cut(s) 371, 533, 613, 734
TspDTI ATGAA 5 cut(s) 13, 138, 453, 567, 840
TspGWI ACGGA 2 cut(s) 819, 924
TspRI CASTG 1 cut(s) 585
Van91I CCANNNNNTGG 1 cut(s) 584
XagI CCTNNNNNAGG 1 cut(s) 318
XapI RAATTY 4 cut(s) 279, 449, 621, 677
XcmI CCANNNNNNNNNTGG 1 cut(s) 499
XmaJI CCTAGG 1 cut(s) 713
XspI CTAG 3 cut(s) 545, 693, 714
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.