Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004277

Physical Location & Seq

Genomic Coordinates Forward (+)

20038116 .. 20038736

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g17760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCTCTTGGGAAACTTCGAAAGGAATGTGAGAGAGCTAAGAGAGCGTTGAGTAGGCAGCATCAGGTTCTAGTGGAGATTGTATCTCTTTTTGATGACGTAGATTTGTCGGAGCCATTGACAAGGGCTAGATTCGAGGAGTTGAACATGGACTTGGTCAAGAAGACCATGGGACCGGTAAAGAAGGCTTTAGAAGATGCAGGCTTGAAGAAGAAAGATATTCACGAGATTGTCCTCGTTGGAGGGAGCACCCGAATTCCTAAGGTGCAAGAGATGTTGAAGGACTTCTTCGATGGGAAAGAGCCAAGCAAGGGGGTCAATCCTGATGAGGCTGTTGCATACGGTGCTGCAGTTCAAGGTGGAGTTCTCAGTGGCGAAGGCGGGGAAGAAACCAAGGACCTGCTTTTGCTTGATGTTGCACCATTTAGTCTTGGTATCGAAACAGTTGGCGGTGTCATGACAAAATTGATTCCAAGAAACACCGTCATCCCGACTAAGAAGTCTCAAGTCTTCACCACTTATCAAGGCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

178

Amino Acids

19.34

Weight (kDa)

6.76

Isoelectric Point (pI)

30.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09080 AT1G09080
fragaria_vesca	FvH4_6g06470
malus_domestica	MD12G1215200.v1.1
prunus_persica	Prupe.6G321700_v2.0.a1
pyrus_communis	pycom04g17760 pycom12g20120
rosa_chinensis	RchiOBHm_Chr2g0142601 RchiOBHm_Chr3g0455591 RchiOBHm_Chr3g0455611 RchiOBHm_Chr3g0455631
rosa_laevigata	RLG00000019973 RLG00000019974 RLG00000025345 RLG00000025351
rosa_multiflora	Rmu_co8491437.1_g000001 Rmu_sc0000223.1_g000003 Rmu_sc0005164.1_g000002 Rmu_sc0015502.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102460
rosa_rugosa	Rorug03G0008500 Rorug03G0008700
rosa_samantha	Rh2AG426400 Rh2BG436000 Rh2CG412900 Rh2DG445800 Rh3AG067800 Rh3AG068000 Rh3DG070300
rosa_wichuraiana	Rw2G034940 Rw3G005440 Rw3G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	499
Acc36I	ACCTGC	1 cut(s)	408
AciI	CCGC	2 cut(s)	381, 450
AcsI	RAATTY	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgeI	ACCGGT	1 cut(s)	175
AgsI	TTSAA	4 cut(s)	145, 208, 280, 356
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
Alw21I	GWGCWC	1 cut(s)	251
Alw26I	GTCTC	1 cut(s)	507
AoxI	GGCC	1 cut(s)	526
ApeKI	GCWGC	2 cut(s)	58, 347
ApoI	RAATTY	1 cut(s)	255
AsiGI	ACCGGT	1 cut(s)	175
Asp700I	GAANNNNTTC	1 cut(s)	284
AspS9I	GGNCC	2 cut(s)	173, 397
AsuHPI	GGTGA	1 cut(s)	505
AsuII	TTCGAA	1 cut(s)	19
AvaII	GGWCC	2 cut(s)	173, 397
AxyI	CCTNAGG	1 cut(s)	261
BauI	CACGAG	1 cut(s)	224
BbsI	GAAGAC	2 cut(s)	170, 502
Bbv12I	GWGCWC	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	70, 334
BccI	CCATC	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	507
BfaI	CTAG	2 cut(s)	71, 129
BfmI	CTRYAG	1 cut(s)	348
BfuAI	ACCTGC	1 cut(s)	408
BisI	GCNGC	2 cut(s)	59, 348
BlsI	GCNGC	2 cut(s)	60, 349
Bme18I	GGWCC	2 cut(s)	173, 397
BmgT120I	GGNCC	2 cut(s)	173, 397
BmiI	GGNNCC	2 cut(s)	114, 174
BmsI	GCATC	2 cut(s)	70, 187
BpiI	GAAGAC	2 cut(s)	170, 502
Bpu14I	TTCGAA	1 cut(s)	19
BpuEI	CTTGAG	1 cut(s)	489
BsaJI	CCNNGG	2 cut(s)	168, 393
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	529
Bse21I	CCTNAGG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	168, 393
BseGI	GGATG	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMII	CTCAG	1 cut(s)	382
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	70, 334
BshFI	GGCC	1 cut(s)	528
BshTI	ACCGGT	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmAI	GTCTC	1 cut(s)	507
BsmFI	GGGAC	1 cut(s)	186
BsnI	GGCC	1 cut(s)	528
Bsp119I	TTCGAA	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	2 cut(s)	381, 450
BspANI	GGCC	1 cut(s)	528
BspCNI	CTCAG	1 cut(s)	381
BspHI	TCATGA	1 cut(s)	456
BspLI	GGNNCC	2 cut(s)	114, 174
BspMAI	CTGCAG	1 cut(s)	352
BspMI	ACCTGC	1 cut(s)	408
BspT104I	TTCGAA	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	529
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	168, 393
BssSI	CACGAG	1 cut(s)	224
BssT1I	CCWWGG	2 cut(s)	168, 393
Bst2BI	CACGAG	1 cut(s)	224
Bst4CI	ACNGT	3 cut(s)	344, 445, 484
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstBI	TTCGAA	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	4 cut(s)	39, 261, 368, 495
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	486
BstMAI	GTCTC	1 cut(s)	507
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 344
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	2 cut(s)	70, 334
BstV2I	GAAGAC	2 cut(s)	170, 502
Bsu36I	CCTNAGG	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	528
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	376
BveI	ACCTGC	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	202
CciI	TCATGA	1 cut(s)	456
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	2 cut(s)	173, 397
CspAI	ACCGGT	1 cut(s)	175
CviAII	CATG	3 cut(s)	148, 169, 457
CviJI	RGCY	9 cut(s)	5, 38, 115, 128, 188, 204, 304, 332, 528
CviKI_1	RGCY	9 cut(s)	5, 38, 115, 128, 188, 204, 304, 332, 528
DdeI	CTNAG	4 cut(s)	39, 261, 368, 495
DrdI	GACNNNNNNGTC	1 cut(s)	499
DseDI	GACNNNNNNGTC	1 cut(s)	499
Eco130I	CCWWGG	2 cut(s)	168, 393
Eco47I	GGWCC	2 cut(s)	173, 397
Eco81I	CCTNAGG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	255
EcoT14I	CCWWGG	2 cut(s)	168, 393
ErhI	CCWWGG	2 cut(s)	168, 393
FaeI	CATG	3 cut(s)	151, 172, 460
FaiI	YATR	4 cut(s)	149, 170, 340, 458
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	3 cut(s)	147, 168, 456
FauI	CCCGC	1 cut(s)	374
Fnu4HI	GCNGC	2 cut(s)	59, 348
FokI	GGATG	1 cut(s)	473
Fsp4HI	GCNGC	2 cut(s)	59, 348
FspBI	CTAG	2 cut(s)	71, 129
GluI	GCNGC	2 cut(s)	59, 348
HaeIII	GGCC	1 cut(s)	528
HapII	CCGG	1 cut(s)	176
Hin1II	CATG	3 cut(s)	151, 172, 460
HinfI	GANTC	2 cut(s)	132, 469
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	1 cut(s)	505
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	5 cut(s)	160, 224, 323, 457, 490
HpyAV	CCTTC	3 cut(s)	178, 274, 371
HpyCH4III	ACNGT	3 cut(s)	344, 445, 484
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	5 cut(s)	200, 268, 338, 350, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 344
HpyF3I	CTNAG	4 cut(s)	39, 261, 368, 495
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	3 cut(s)	151, 172, 460
LmnI	GCTCC	2 cut(s)	112, 246
LpnPI	CCDG	5 cut(s)	50, 186, 189, 336, 413
Lsp1109I	GCAGC	2 cut(s)	70, 334
LweI	GCATC	2 cut(s)	70, 187
MaeI	CTAG	2 cut(s)	71, 129
MaeII	ACGT	1 cut(s)	99
MboII	GAAGA	7 cut(s)	175, 206, 220, 223, 280, 398, 502
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	2 cut(s)	255, 464
MmeI	TCCRAC	2 cut(s)	90, 220
MnlI	CCTC	4 cut(s)	130, 236, 245, 322
MroXI	GAANNNNTTC	1 cut(s)	284
MspI	CCGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	44, 344
NcoI	CCATGG	1 cut(s)	168
NlaIII	CATG	3 cut(s)	151, 172, 460
NlaIV	GGNNCC	2 cut(s)	114, 174
NspV	TTCGAA	1 cut(s)	19
PagI	TCATGA	1 cut(s)	456
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	2 cut(s)	132, 469
PflFI	GACNNNGTC	1 cut(s)	155
PinAI	ACCGGT	1 cut(s)	175
PkrI	GCNGC	2 cut(s)	60, 349
PpuMI	RGGWCCY	1 cut(s)	397
Psp5II	RGGWCCY	1 cut(s)	397
PspN4I	GGNNCC	2 cut(s)	114, 174
PspPI	GGNCC	2 cut(s)	173, 397
PspPPI	RGGWCCY	1 cut(s)	397
PstI	CTGCAG	1 cut(s)	352
PsyI	GACNNNGTC	1 cut(s)	155
SatI	GCNGC	2 cut(s)	59, 348
Sau96I	GGNCC	2 cut(s)	173, 397
SduI	GDGCHC	1 cut(s)	251
SetI	ASST	6 cut(s)	40, 69, 102, 267, 361, 402
SfaNI	GCATC	2 cut(s)	70, 187
SfcI	CTRYAG	1 cut(s)	348
SfuI	TTCGAA	1 cut(s)	19
SinI	GGWCC	2 cut(s)	173, 397
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
Sse9I	AATT	2 cut(s)	255, 464
SsiI	CCGC	2 cut(s)	381, 450
SspMI	CTAG	2 cut(s)	71, 129
StyI	CCWWGG	2 cut(s)	168, 393
TaaI	ACNGT	3 cut(s)	344, 445, 484
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	4 cut(s)	19, 135, 291, 438
TasI	AATT	2 cut(s)	255, 464
TfiI	GAWTC	2 cut(s)	132, 469
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	2 cut(s)	58, 347
TspRI	CASTG	1 cut(s)	376
Tth111I	GACNNNGTC	1 cut(s)	155
VpaK11BI	GGWCC	2 cut(s)	173, 397
XapI	RAATTY	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	2 cut(s)	71, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.