Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004277

Physical Location & Seq

Genomic Coordinates Reverse (-)

4519367 .. 4519867

Gene Structure 501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G005460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAGTATCTTATTAAGTTGATCAAGAAGCAGTACAACAGAGACATTAGCAAGGACAACAAGGCTATCTGGAAGCTTCACAAGGAATGCGAGAGGGCCAAGAGAGCCTTGTATTTCCCGCACCAGTTTTCTGTGGGGATTGAGTCTCCTTTCGATGGTATGGATTTCTCGGAATCCTTGACAAGGGAGAGGTTTGAGGAATTGAACATGGACTTGTTCAACAAGACCATGAGGATAGTGGAAAAGACTCTGCAAGATACAGGATTGAAGAAAAAGGATATTCATGATATTGTGCTTGTTGGAGGGAGCACTAAAATTCCGAAGGTAAAGCAGTTGTTGATGGACTTGTTTAATGGGAAGGAACCAATGAAGGGACTTAATCCTGATGAGGTTGCGGCCTATGGTGCTTCAATTCATGGTGGAGTCCTCAGCGGAGAAGCTGATTATGATACTCATGTATACTGCGATTGTCATAAATACTTAAAAAGTGTAGTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

166

Amino Acids

19.06

Weight (kDa)

7.71

Isoelectric Point (pI)

31.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	1 - 156	5.7e-45	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09080 AT1G09080
fragaria_vesca	FvH4_6g06470
malus_domestica	MD12G1215200.v1.1
prunus_persica	Prupe.6G321700_v2.0.a1
pyrus_communis	pycom04g17760 pycom12g20120
rosa_chinensis	RchiOBHm_Chr2g0142601 RchiOBHm_Chr3g0455591 RchiOBHm_Chr3g0455611 RchiOBHm_Chr3g0455631
rosa_laevigata	RLG00000019973 RLG00000019974 RLG00000025345 RLG00000025351
rosa_multiflora	Rmu_co8491437.1_g000001 Rmu_sc0000223.1_g000003 Rmu_sc0005164.1_g000002 Rmu_sc0015502.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102460
rosa_rugosa	Rorug03G0008500 Rorug03G0008700
rosa_samantha	Rh2AG426400 Rh2BG436000 Rh2CG412900 Rh2DG445800 Rh3AG067800 Rh3AG068000 Rh3DG070300
rosa_wichuraiana	Rw2G034940 Rw3G005440 Rw3G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	459
AciI	CCGC	3 cut(s)	119, 395, 432
AcsI	RAATTY	1 cut(s)	315
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	3 cut(s)	155, 183, 371
AgsI	TTSAA	4 cut(s)	205, 220, 268, 411
AluBI	AGCT	2 cut(s)	76, 440
AluI	AGCT	2 cut(s)	76, 440
Alw21I	GWGCWC	1 cut(s)	311
Alw26I	GTCTC	2 cut(s)	36, 150
AoxI	GGCC	2 cut(s)	96, 396
ApoI	RAATTY	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	96
BaeI	ACNNNNGTAYC	2 cut(s)	441, 474
Bbv12I	GWGCWC	1 cut(s)	311
BbvCI	CCTCAGC	1 cut(s)	428
BccI	CCATC	2 cut(s)	149, 334
BclI	TGATCA	1 cut(s)	21
BcoDI	GTCTC	2 cut(s)	36, 150
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	363
Bpu10I	CCTNAGC	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 183, 371
Bse1I	ACTGG	1 cut(s)	124
BseLI	CCNNNNNNNGG	3 cut(s)	155, 183, 371
BseMII	CTCAG	1 cut(s)	442
BseNI	ACTGG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	98, 398
BsiHKAI	GWGCWC	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	3 cut(s)	155, 183, 371
BsmAI	GTCTC	2 cut(s)	36, 150
BsmFI	GGGAC	1 cut(s)	387
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	2 cut(s)	98, 398
Bsp1286I	GDGCHC	1 cut(s)	311
Bsp143I	GATC	1 cut(s)	21
BspACI	CCGC	3 cut(s)	119, 395, 432
BspANI	GGCC	2 cut(s)	98, 398
BspCNI	CTCAG	1 cut(s)	441
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	124
BssMI	GATC	1 cut(s)	21
BssNAI	GTATAC	1 cut(s)	460
Bst1107I	GTATAC	1 cut(s)	460
BstDEI	CTNAG	1 cut(s)	428
BstENI	CCTNNNNNAGG	1 cut(s)	181
BstKTI	GATC	1 cut(s)	24
BstMAI	GTCTC	2 cut(s)	36, 150
BstMBI	GATC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 404
BstZ17I	GTATAC	1 cut(s)	460
BsuRI	GGCC	2 cut(s)	98, 398
CciI	TCATGA	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	5 cut(s)	208, 229, 284, 416, 455
CviJI	RGCY	6 cut(s)	65, 76, 98, 107, 398, 440
CviKI_1	RGCY	6 cut(s)	65, 76, 98, 107, 398, 440
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	428
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
EcoNI	CCTNNNNNAGG	1 cut(s)	181
FaeI	CATG	5 cut(s)	211, 232, 287, 419, 458
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	5 cut(s)	207, 228, 283, 415, 454
FauI	CCCGC	1 cut(s)	126
FbaI	TGATCA	1 cut(s)	21
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	1 cut(s)	396
Fsp4HI	GCNGC	1 cut(s)	396
GluI	GCNGC	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	98, 398
Hin1II	CATG	5 cut(s)	211, 232, 287, 419, 458
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	4 cut(s)	143, 173, 247, 423
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	2 cut(s)	172, 321
Hpy188III	TCNNGA	4 cut(s)	25, 70, 284, 383
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	3 cut(s)	316, 352, 364
HpyCH4V	TGCA	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 404
HpyF3I	CTNAG	1 cut(s)	428
Hsp92II	CATG	5 cut(s)	211, 232, 287, 419, 458
Ksp22I	TGATCA	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	21
LmnI	GCTCC	1 cut(s)	306
LpnPI	CCDG	4 cut(s)	55, 137, 246, 396
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	311
MluCI	AATT	3 cut(s)	200, 315, 411
MlyI	GAGTC	3 cut(s)	152, 241, 432
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	7 cut(s)	87, 183, 190, 225, 296, 382, 437
MseI	TTAA	4 cut(s)	15, 351, 378, 482
MspA1I	CMGCKG	1 cut(s)	432
Mva1269I	GAATGC	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	104, 404
NdeII	GATC	1 cut(s)	21
NlaIII	CATG	5 cut(s)	211, 232, 287, 419, 458
NlaIV	GGNNCC	1 cut(s)	363
PagI	TCATGA	1 cut(s)	283
PctI	GAATGC	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	3 cut(s)	151, 241, 431
PpsI	GAGTC	3 cut(s)	151, 241, 431
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	96
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	4 cut(s)	15, 351, 378, 482
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	1 cut(s)	21
Sau96I	GGNCC	1 cut(s)	96
SchI	GAGTC	3 cut(s)	152, 241, 432
SduI	GDGCHC	1 cut(s)	311
SetI	ASST	5 cut(s)	78, 194, 327, 393, 442
Sse9I	AATT	3 cut(s)	200, 315, 411
SsiI	CCGC	3 cut(s)	119, 395, 432
TaqI	TCGA	1 cut(s)	153
TasI	AATT	3 cut(s)	200, 315, 411
TatI	WGTACW	1 cut(s)	33
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	4 cut(s)	15, 351, 378, 482
Tru9I	TTAA	4 cut(s)	15, 351, 378, 482
TspDTI	ATGAA	3 cut(s)	272, 383, 404
XagI	CCTNNNNNAGG	1 cut(s)	181
XapI	RAATTY	1 cut(s)	315
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.