Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004277

Physical Location & Seq

Genomic Coordinates Reverse (-)

63353319 .. 63355915

Gene Structure 2597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG426400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCGTTGAAGATGGCGATTCTGCTTTTCTTTATCTTGGTCACAGGAGCTTCGTCTGGAATGGCATTCACCGGTGGAATCAATGCTGCAATGTTCATGAAGATGCAGGAAACAGCTGAGGCCTATGAATGTGAAGGAAGACTATTGCCAAATGAATGTTCTGAGATTAAAAGAATTCCTGTAAGATTCGACAAAGCGACCCGAATTGAAGTGTTTTTTGATATCGATGCAAATGGGATTCTACATGTGACCATTAAAGAGGATGTCAAAGCAAGGGATAAGGTACTTGCCAGGCTCAGTCTTGAGGATGTGGCACACGTCGCTAATGCATTAAAAGGAATTATGTATCCTTCCAATCTGGACAAGCGGAGGAAGCTTCATAGCACAATAGAGAAGGCTCGCGCATTTAGTTTGATACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.62

Weight (kDa)

8.95

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09080 AT1G09080
fragaria_vesca	FvH4_6g06470
malus_domestica	MD12G1215200.v1.1
prunus_persica	Prupe.6G321700_v2.0.a1
pyrus_communis	pycom04g17760 pycom12g20120
rosa_chinensis	RchiOBHm_Chr2g0142601 RchiOBHm_Chr3g0455591 RchiOBHm_Chr3g0455611 RchiOBHm_Chr3g0455631
rosa_laevigata	RLG00000019973 RLG00000019974 RLG00000025345 RLG00000025351
rosa_multiflora	Rmu_co8491437.1_g000001 Rmu_sc0000223.1_g000003 Rmu_sc0005164.1_g000002 Rmu_sc0015502.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102460
rosa_rugosa	Rorug03G0008500 Rorug03G0008700
rosa_samantha	Rh2AG426400 Rh2BG436000 Rh2CG412900 Rh2DG445800 Rh3AG067800 Rh3AG068000 Rh3DG070300
rosa_wichuraiana	Rw2G034940 Rw3G005440 Rw3G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	402
AciI	CCGC	1 cut(s)	367
AcsI	RAATTY	1 cut(s)	174
AfaI	GTAC	1 cut(s)	285
AflIII	ACRYGT	2 cut(s)	244, 316
AgeI	ACCGGT	1 cut(s)	71
AgsI	TTSAA	2 cut(s)	10, 209
AjiI	CACGTC	1 cut(s)	319
AjnI	CCWGG	1 cut(s)	290
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AluBI	AGCT	3 cut(s)	50, 116, 376
AluI	AGCT	3 cut(s)	50, 116, 376
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	1 cut(s)	174
AsiGI	ACCGGT	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	404
AsuHPI	GGTGA	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	145
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	7
BciT130I	CCWGG	1 cut(s)	292
BciVI	GTATCC	1 cut(s)	357
BfuI	GTATCC	1 cut(s)	357
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	1 cut(s)	292
BmgBI	CACGTC	1 cut(s)	319
BmrFI	CCNGG	1 cut(s)	292
BmsI	GCATC	2 cut(s)	93, 217
BpiI	GAAGAC	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	323
Bsa29I	ATCGAT	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	71
Bse118I	RCCGGY	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	292
BseCI	ATCGAT	1 cut(s)	225
BseGI	GGATG	2 cut(s)	268, 313
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	3 cut(s)	108, 153, 310
BseXI	GCAGC	1 cut(s)	73
Bsh1236I	CGCG	1 cut(s)	402
BshFI	GGCC	1 cut(s)	122
BshTI	ACCGGT	1 cut(s)	71
BshVI	ATCGAT	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	122
BspACI	CCGC	1 cut(s)	367
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	3 cut(s)	109, 154, 309
BspDI	ATCGAT	1 cut(s)	225
BspFNI	CGCG	1 cut(s)	402
BspHI	TCATGA	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	292
Bst4CI	ACNGT	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	400
BstDEI	CTNAG	3 cut(s)	117, 162, 296
BstF5I	GGATG	2 cut(s)	268, 313
BstFNI	CGCG	1 cut(s)	402
BstHHI	GCGC	1 cut(s)	404
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 373
BstNI	CCWGG	1 cut(s)	292
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	290
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	145
Bsu15I	ATCGAT	1 cut(s)	225
BsuI	GTATCC	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	122
BsuTUI	ATCGAT	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	268, 313
Cac8I	GCNNGC	1 cut(s)	400
CciI	TCATGA	1 cut(s)	96
CfoI	GCGC	1 cut(s)	404
Cfr10I	RCCGGY	1 cut(s)	71
ClaI	ATCGAT	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	284
CspAI	ACCGGT	1 cut(s)	71
CviAII	CATG	2 cut(s)	97, 245
CviJI	RGCY	6 cut(s)	50, 116, 122, 295, 376, 398
CviKI_1	RGCY	6 cut(s)	50, 116, 122, 295, 376, 398
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	3 cut(s)	117, 162, 296
Eco147I	AGGCCT	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	174
EcoRII	CCWGG	1 cut(s)	290
EcoRV	GATATC	1 cut(s)	223
EcoT22I	ATGCAT	1 cut(s)	331
FaeI	CATG	2 cut(s)	100, 248
FaiI	YATR	5 cut(s)	98, 126, 246, 344, 381
FatI	CATG	2 cut(s)	96, 244
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	2 cut(s)	275, 320
Fsp4HI	GCNGC	1 cut(s)	87
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	2 cut(s)	100, 248
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	4 cut(s)	19, 78, 186, 238
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	4 cut(s)	57, 97, 302, 359
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	3 cut(s)	128, 360, 388
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	4 cut(s)	89, 106, 230, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 373
HpyF3I	CTNAG	3 cut(s)	117, 162, 296
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	100, 248
HspAI	GCGC	1 cut(s)	402
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	8 cut(s)	30, 42, 85, 92, 192, 277, 304, 344
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	2 cut(s)	93, 217
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	2 cut(s)	40, 247
MboII	GAAGA	3 cut(s)	22, 112, 150
MluCI	AATT	3 cut(s)	174, 204, 339
MnlI	CCTC	4 cut(s)	112, 253, 298, 363
Mph1103I	ATGCAT	1 cut(s)	331
MseI	TTAA	3 cut(s)	168, 255, 332
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	292
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	292
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	2 cut(s)	320, 373
NlaIII	CATG	2 cut(s)	100, 248
NmuCI	GTSAC	2 cut(s)	40, 247
NsiI	ATGCAT	1 cut(s)	331
NspI	RCATGY	1 cut(s)	248
PagI	TCATGA	1 cut(s)	96
PceI	AGGCCT	1 cut(s)	122
PciI	ACATGT	1 cut(s)	244
PctI	GAATGC	1 cut(s)	65
PfeI	GAWTC	4 cut(s)	19, 78, 186, 238
PinAI	ACCGGT	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	88
PscI	ACATGT	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	3 cut(s)	168, 255, 332
SatI	GCNGC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	292
SetI	ASST	5 cut(s)	52, 118, 285, 321, 378
SfaNI	GCATC	2 cut(s)	93, 217
SgrAI	CRCCGGYG	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	3 cut(s)	174, 204, 339
SseBI	AGGCCT	1 cut(s)	122
SsiI	CCGC	1 cut(s)	367
StuI	AGGCCT	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	290
TaaI	ACNGT	1 cut(s)	420
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	189, 225
TasI	AATT	3 cut(s)	174, 204, 339
TfiI	GAWTC	4 cut(s)	19, 78, 186, 238
Tru1I	TTAA	3 cut(s)	168, 255, 332
Tru9I	TTAA	3 cut(s)	168, 255, 332
TseFI	GTSAC	2 cut(s)	40, 247
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	2 cut(s)	40, 247
TspDTI	ATGAA	5 cut(s)	85, 113, 141, 168, 368
XapI	RAATTY	1 cut(s)	174
XceI	RCATGY	1 cut(s)	248
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.