Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004277

Physical Location & Seq

Genomic Coordinates Reverse (-)

645216 .. 648120

Gene Structure 2905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0008500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2841 bp

ATGGATGTGATGAAGAGATTCACTAGTTCGTCGGAGATTCAGGGCTACCCGGAACTGTCTTCGATTTCGAGCCTTTTTGATGATTTCATAGGAGGGATTGCTTTCGATACTAAGCAACAAGATGTTAACGGGTTCACGATGACTTCGGATATTAATAATGTCGACGTTATGCAAGTCCAACAAGTCTCAAATCTTGATGGGCAGAATGTGCAGCCGCCACCAGTGACAAAGATGTACAAACGAAACCGAAAGAGAAGCCTTGCAGTTTCTTCAGAAGAGTCACAACAGCCTGCTGATTCAGATGAACTTAGTTCGGGAAGCAGTGAAGATACGGCTCCTTGTTCGAAAAGGTTGAAGGTTGAAACTAAAGAAGGACTTGCACACTCGCAGTGTGAGTCTCCTGTGTCGTTTGATTCTGAAGTGATGCAAGTGAAGATGGGAGAGGCTGAGAACTCCATACAAGAGGAGCCGAAACCAGAAGTACTTGTCGATGAAGTAACAAAGGATGGAGTGTTAACAGCAGAGCACATCAATGCTCATTTGCTGAGTCTATTGTCTACCGCAGCGCCAATGCATTGTTCAAACTATGATCGAGTGTGTCAGTTTTGTGCATCCGGTAGGCTATTGTTTGCGGCGACTCCATTGTACTGTTCAAACTGTGGTGGCCGTATCAAGGAGAGAGCAAACTACTACAGCACACCAACTGAGCATGGTGCAAAGTATTGTTTCTGTTCGCGGTGCTATAACAATACAAGAAGTGGAGATATCTCATTGGGGGATACCAAAGTTTCAAAGGCGACACTCGCAAAGAAGAAAAATGATGAGGAGATAGAGGAGCCATGGGTGCGGTGTGGTAGGTGTGAGGGATGGCAACATCAGATATGTGCTCTCTATAATGATAAGTGTGATTCGGACGAGTATGTATGTTTCAAATGTCTGTTGAAAGAGATGGAATTCGGAGAGCACAAGCCGAAAAATGTTGGTTTTTGTGCTAAAGATCTGCCAACTAGTATGCTTAGTGACCACATCGAGAAAAGACTCATTAGGTGCCTCGAGCAAGAGAGACGAAAGAGAAGGTCAAAGGATAAAGGAAATGAATCTTCTGAGGTTCTAGGAGTGGAAGGTCTTGTTGTAAGAGAGGTTTTATCGGTTGAGAAAACAGTTAAAGTGAAGCAGCAGTATTTGGATCTGTTTCCTGAACAGAGTTACCCTGCTGAATTCCCATACAAATCCAAGGTCATTCTTATGTTTCAGAAGATTGATGGTGTAGATGTGTGTATTTTCGGAATGTATGTGCAAGAGTTCGGCTCAGAATGTAGCTATCCAAATAAGGGTTGTGTTTATATATCATATCTTGATTCAGTCAAGTACTTTAGACCTGCAGAAGCAAGAGCTGTGACAGGAGAAGCTCTTCGGACATTTGTTTACCATGAAGTATTGATAGGATACCTTGAGTTTTGCAAGAAACAAGGCTTCGTGACAGCCTACATATGGGCCTGCCCCCCTTCAAAGGAAGAAGATTATATTCTGTACTGCCATCCACCAATGCAGAAGACACCCTTGCCAGTTAAGCTGCGTAAATGGTATCAGTCGATGATAAAGAAAGCAAGTAATGAAGGGATTGTGGTCGGCACCACTAACTTATATGATCGGTATTTTATTCCTAGTAGTACTGGGGAATGCCACTCCAAGGTCACAGCAGCTCGTTTGCCACATTTTGATGGTGACTATTGGTCTAATGCTGCTGAAGATTTGATCAAGGAGATTGGCAAGGAGGAGGAGACAAAAATTAGAAAGAGAACTTTAGAAGCGATGGGACATACAAATGCTTCTGATGGTTCCACCAAAGATATTCTTCTGATGCAGAAACTGGGGGATGCTATCTTAACCAACAGGGAGAATTTCATGGTTGTCAATTTTCAGTATGTTTGCATTCGCTGCAACGAAGCGATATTATCTGGGGAACACTGGTCTTGTAGTCAGTGCAAAAACTTTCACCTTTGTGAAAAATGCCATAGCCTTTGTGGTGGGAAGGACACGCACATGACAGTCGACATGGAACAACATGTGCTCTCTCAGGTAATAGTACTACTGGAGGATTATGAGCTTCCTGATACAAAGGATAGAGAGGTTATTTTGAACAATGGTTTATTCGAGGAAAGGACTTCTTTCTTGAACTTCTGTGTGAAGAATCATTATCAATTTGACACGCTTCGCCAGGCCAAGTATTCCTCACTGATGATTCTCCATCATCTCAGTGATCTTACTGCACTGACTAGTGCTGAGAAGAACAAGACATGCAGCAGCATTGGCCATAAAGTTGCTGATCAGAGCTGGATATGTGAGATTGATCAAGACAAAGGCAGTTCACCCACGGTTGGTCATGTGACAAAGATCAGTAGAGAGACACAACTGACTGAAGGATTGAGTCCAGCATCGATAAAGGAACTGCTCCATGTGTTGGAACATGCTGCTGTGTGTTACCCTATCAAGAACCGGCCTTGCTCTTACCCTAACACAAACTGCCTCAAAATTAAAAAGCTATTTGTCCATGTAAAGAAGTGCACTGTTCGAGCTGCTGGAGGTTGTGAACTATGTAAAAAGGCATGGCTTGGATTGATTTTGCATTCGAAAGAATGTAGAAAATCAAATTGCATTGTACCGCGTTGCATGGACCTGAGGAAGTACACAGATCAGCGAGGGAAAACCAGAGATGGGACTAAAAGATATAAAGCTAGCATTGAGGTGTCCAGTTGTTCAAGCCAGACCTTGTTGCCAACAGAATCACAGTGGTTGCCTGAGACTGGGATATGGGTATTCCCATACATTATTCCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

946

Amino Acids

107.05

Weight (kDa)

6.63

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_KAT11	PF08214	377 - 599	5.8e-39	Histone acetylation protein
zf-TAZ	PF02135	815 - 890	3.3e-09	TAZ zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09080 AT1G09080
fragaria_vesca	FvH4_6g06470
malus_domestica	MD12G1215200.v1.1
prunus_persica	Prupe.6G321700_v2.0.a1
pyrus_communis	pycom04g17760 pycom12g20120
rosa_chinensis	RchiOBHm_Chr2g0142601 RchiOBHm_Chr3g0455591 RchiOBHm_Chr3g0455611 RchiOBHm_Chr3g0455631
rosa_laevigata	RLG00000019973 RLG00000019974 RLG00000025345 RLG00000025351
rosa_multiflora	Rmu_co8491437.1_g000001 Rmu_sc0000223.1_g000003 Rmu_sc0005164.1_g000002 Rmu_sc0015502.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102460
rosa_rugosa	Rorug03G0008500 Rorug03G0008700
rosa_samantha	Rh2AG426400 Rh2BG436000 Rh2CG412900 Rh2DG445800 Rh3AG067800 Rh3AG068000 Rh3DG070300
rosa_wichuraiana	Rw2G034940 Rw3G005440 Rw3G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1387
AccB1I	GGYRCC	2 cut(s)	1047, 1631
AccB7I	CCANNNNNTGG	1 cut(s)	2461
AccI	GTMKAC	3 cut(s)	162, 557, 2052
AccII	CGCG	2 cut(s)	736, 2665
AciI	CCGC	6 cut(s)	215, 561, 632, 736, 847, 2663
AclWI	GGATC	1 cut(s)	1194
AcoI	YGGCCR	2 cut(s)	664, 2311
AcsI	RAATTY	3 cut(s)	953, 1217, 1900
AcuI	CTGAAG	4 cut(s)	255, 438, 1767, 2439
AfaI	GTAC	9 cut(s)	236, 483, 647, 1370, 1532, 1672, 2088, 2661, 2687
AfiI	CCNNNNNNNGG	9 cut(s)	673, 1331, 1491, 1510, 1690, 2378, 2461, 2715, 2804
AflIII	ACRYGT	1 cut(s)	2065
AhdI	GACNNNNNGTC	1 cut(s)	1732
AhlI	ACTAGT	3 cut(s)	23, 1007, 2276
AjnI	CCWGG	1 cut(s)	2217
AjuI	GAANNNNNNNTTGG	2 cut(s)	562, 594
AleI	CACNNNNGTG	1 cut(s)	2001
Alw21I	GWGCWC	5 cut(s)	528, 889, 966, 2073, 2567
Alw26I	GTCTC	6 cut(s)	190, 402, 1057, 1775, 2399, 2795
Alw44I	GTGCAC	1 cut(s)	2563
AlwI	GGATC	1 cut(s)	1194
AlwNI	CAGNNNCTG	1 cut(s)	1870
Ama87I	CYCGRG	1 cut(s)	1052
AoxI	GGCC	5 cut(s)	664, 1494, 2220, 2311, 2498
ApaLI	GTGCAC	1 cut(s)	2563
ApoI	RAATTY	3 cut(s)	953, 1217, 1900
ArsI	GACNNNNNNTTYG	2 cut(s)	1221, 1253
AseI	ATTAAT	1 cut(s)	153
Asp700I	GAANNNNTTC	2 cut(s)	17, 1410
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	2 cut(s)	1494, 2674
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	3 cut(s)	1736, 1988, 2361
AsuII	TTCGAA	2 cut(s)	344, 2630
AsuNHI	GCTAGC	1 cut(s)	2735
AvaI	CYCGRG	1 cut(s)	1052
AvaII	GGWCC	1 cut(s)	2674
AxyI	CCTNAGG	1 cut(s)	2678
BaeGI	GKGCMC	1 cut(s)	2567
BaeI	ACNNNNGTAYC	2 cut(s)	771, 804
BalI	TGGCCA	1 cut(s)	2313
BanI	GGYRCC	2 cut(s)	1047, 1631
BbsI	GAAGAC	2 cut(s)	51, 1559
Bbv12I	GWGCWC	5 cut(s)	528, 889, 966, 2073, 2567
BceAI	ACGGC	2 cut(s)	348, 651
BciT130I	CCWGG	1 cut(s)	2219
BciVI	GTATCC	2 cut(s)	772, 1439
BclI	TGATCA	3 cut(s)	1755, 2326, 2350
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	6 cut(s)	190, 402, 1057, 1775, 2399, 2795
BcuI	ACTAGT	3 cut(s)	23, 1007, 2276
BfaI	CTAG	6 cut(s)	24, 1008, 1112, 1665, 2277, 2736
BfmI	CTRYAG	2 cut(s)	691, 1380
BfoI	RGCGCY	1 cut(s)	569
BfuAI	ACCTGC	1 cut(s)	1387
BfuI	GTATCC	2 cut(s)	772, 1439
BglII	AGATCT	1 cut(s)	997
BmcAI	AGTACT	4 cut(s)	483, 1370, 1672, 2088
Bme1390I	CCNGG	2 cut(s)	50, 2219
Bme18I	GGWCC	1 cut(s)	2674
BmeRI	GACNNNNNGTC	1 cut(s)	1732
BmeT110I	CYCGRG	1 cut(s)	1052
BmgT120I	GGNCC	2 cut(s)	1494, 2674
BmiI	GGNNCC	6 cut(s)	336, 468, 837, 1049, 1633, 1840
BmrFI	CCNGG	2 cut(s)	50, 2219
BmrI	ACTGGG	3 cut(s)	1683, 1880, 2814
BmsI	GCATC	5 cut(s)	414, 620, 1851, 1867, 2444
BmtI	GCTAGC	1 cut(s)	2739
BmuI	ACTGGG	3 cut(s)	1683, 1880, 2814
BpiI	GAAGAC	2 cut(s)	51, 1559
BplI	GAGNNNNNCTC	2 cut(s)	1292, 1324
BpmI	CTGGAG	2 cut(s)	2114, 2601
Bpu14I	TTCGAA	2 cut(s)	344, 2630
BpuEI	CTTGAG	1 cut(s)	1472
BpuMI	CCSGG	1 cut(s)	50
Bsa29I	ATCGAT	1 cut(s)	2438
BsaJI	CCNNGG	4 cut(s)	839, 1233, 1689, 2373
BsaWI	WCCGGW	1 cut(s)	614
Bsc4I	CCNNNNNNNGG	9 cut(s)	673, 1331, 1491, 1510, 1690, 2378, 2461, 2715, 2804
Bse118I	RCCGGY	1 cut(s)	2496
Bse1I	ACTGG	8 cut(s)	221, 1565, 1678, 1875, 1973, 2097, 2751, 2809
Bse21I	CCTNAGG	1 cut(s)	2678
BseBI	CCWGG	1 cut(s)	2219
BseCI	ATCGAT	1 cut(s)	2438
BseDI	CCNNGG	4 cut(s)	839, 1233, 1689, 2373
BseGI	GGATG	6 cut(s)	10, 511, 611, 872, 1537, 1882
BseLI	CCNNNNNNNGG	9 cut(s)	673, 1331, 1491, 1510, 1690, 2378, 2461, 2715, 2804
BseNI	ACTGG	8 cut(s)	221, 1565, 1678, 1875, 1973, 2097, 2751, 2809
BseRI	GAGGAG	5 cut(s)	479, 839, 848, 1790, 1793
BseSI	GKGCMC	1 cut(s)	2567
BsgI	GTGCAG	2 cut(s)	230, 2253
Bsh1236I	CGCG	2 cut(s)	736, 2665
BshFI	GGCC	5 cut(s)	666, 1496, 2222, 2313, 2500
BshNI	GGYRCC	2 cut(s)	1047, 1631
BshVI	ATCGAT	1 cut(s)	2438
BsiHKAI	GWGCWC	5 cut(s)	528, 889, 966, 2073, 2567
BsiHKCI	CYCGRG	1 cut(s)	1052
BsiSI	CCGG	3 cut(s)	50, 615, 2497
BslFI	GGGAC	2 cut(s)	1830, 2731
BslI	CCNNNNNNNGG	9 cut(s)	673, 1331, 1491, 1510, 1690, 2378, 2461, 2715, 2804
BsmAI	GTCTC	6 cut(s)	190, 402, 1057, 1775, 2399, 2795
BsmBI	CGTCTC	1 cut(s)	1057
BsmFI	GGGAC	2 cut(s)	1830, 2731
BsmI	GAATGC	3 cut(s)	1685, 1932, 2626
BsnI	GGCC	5 cut(s)	666, 1496, 2222, 2313, 2500
BsoBI	CYCGRG	1 cut(s)	1052
Bsp119I	TTCGAA	2 cut(s)	344, 2630
Bsp1286I	GDGCHC	5 cut(s)	528, 889, 966, 2073, 2567
Bsp1407I	TGTACA	1 cut(s)	234
Bsp19I	CCATGG	1 cut(s)	839
BspACI	CCGC	6 cut(s)	215, 561, 632, 736, 847, 2663
BspANI	GGCC	5 cut(s)	666, 1496, 2222, 2313, 2500
BspDI	ATCGAT	1 cut(s)	2438
BspFNI	CGCG	2 cut(s)	736, 2665
BspLI	GGNNCC	6 cut(s)	336, 468, 837, 1049, 1633, 1840
BspMAI	CTGCAG	1 cut(s)	1384
BspMI	ACCTGC	1 cut(s)	1387
BspOI	GCTAGC	1 cut(s)	2739
BspPI	GGATC	1 cut(s)	1194
BspQI	GCTCTTC	1 cut(s)	1416
BspT104I	TTCGAA	2 cut(s)	344, 2630
BspT107I	GGYRCC	2 cut(s)	1047, 1631
BsrFI	RCCGGY	1 cut(s)	2496
BsrGI	TGTACA	1 cut(s)	234
BsrI	ACTGG	8 cut(s)	221, 1565, 1678, 1875, 1973, 2097, 2751, 2809
BssAI	RCCGGY	1 cut(s)	2496
BssECI	CCNNGG	4 cut(s)	839, 1233, 1689, 2373
BssT1I	CCWWGG	3 cut(s)	839, 1233, 1689
Bst2UI	CCWGG	1 cut(s)	2219
Bst4CI	ACNGT	8 cut(s)	57, 650, 659, 1162, 2050, 2377, 2569, 2790
Bst6I	CTCTTC	3 cut(s)	8, 270, 1416
BstAPI	GCANNNNNTGC	2 cut(s)	208, 1938
BstAUI	TGTACA	1 cut(s)	234
BstBI	TTCGAA	2 cut(s)	344, 2630
BstC8I	GCNNGC	3 cut(s)	291, 1498, 2737
BstDSI	CCRYGG	2 cut(s)	839, 2373
BstF5I	GGATG	6 cut(s)	10, 511, 611, 872, 1537, 1882
BstFNI	CGCG	2 cut(s)	736, 2665
BstH2I	RGCGCY	1 cut(s)	569
BstHHI	GCGC	1 cut(s)	568
BstMAI	GTCTC	6 cut(s)	190, 402, 1057, 1775, 2399, 2795
BstMWI	GCNNNNNNNGC	6 cut(s)	208, 803, 844, 1570, 1938, 2310
BstNI	CCWGG	1 cut(s)	2219
BstNSI	RCATGY	3 cut(s)	2069, 2301, 2471
BstSCI	CCNGG	2 cut(s)	48, 2217
BstSFI	CTRYAG	2 cut(s)	691, 1380
BstSLI	GKGCMC	1 cut(s)	2567
BstUI	CGCG	2 cut(s)	736, 2665
BstV2I	GAAGAC	2 cut(s)	51, 1559
BstX2I	RGATCY	2 cut(s)	997, 1186
BstYI	RGATCY	2 cut(s)	997, 1186
Bsu15I	ATCGAT	1 cut(s)	2438
Bsu36I	CCTNAGG	1 cut(s)	2678
BsuI	GTATCC	2 cut(s)	772, 1439
BsuRI	GGCC	5 cut(s)	666, 1496, 2222, 2313, 2500
BsuTUI	ATCGAT	1 cut(s)	2438
BtgI	CCRYGG	2 cut(s)	839, 2373
BtgZI	GCGATG	1 cut(s)	1826
BtsCI	GGATG	6 cut(s)	10, 511, 611, 872, 1537, 1882
BtsI	GCAGTG	2 cut(s)	328, 395
BveI	ACCTGC	1 cut(s)	1387
Cac8I	GCNNGC	3 cut(s)	291, 1498, 2737
CaiI	CAGNNNCTG	1 cut(s)	1870
CfoI	GCGC	1 cut(s)	568
Cfr10I	RCCGGY	1 cut(s)	2496
Cfr13I	GGNCC	2 cut(s)	1494, 2674
ClaI	ATCGAT	1 cut(s)	2438
Csp6I	GTAC	9 cut(s)	235, 482, 646, 1369, 1531, 1671, 2087, 2660, 2686
CviQI	GTAC	9 cut(s)	235, 482, 646, 1369, 1531, 1671, 2087, 2660, 2686
DriI	GACNNNNNGTC	1 cut(s)	1732
EaeI	YGGCCR	2 cut(s)	664, 2311
Eam1104I	CTCTTC	3 cut(s)	8, 270, 1416
Eam1105I	GACNNNNNGTC	1 cut(s)	1732
EarI	CTCTTC	3 cut(s)	8, 270, 1416
Eco130I	CCWWGG	3 cut(s)	839, 1233, 1689
Eco32I	GATATC	1 cut(s)	766
Eco47I	GGWCC	1 cut(s)	2674
Eco57I	CTGAAG	4 cut(s)	255, 438, 1767, 2439
Eco81I	CCTNAGG	1 cut(s)	2678
Eco88I	CYCGRG	1 cut(s)	1052
EcoRI	GAATTC	2 cut(s)	953, 1217
EcoRII	CCWGG	1 cut(s)	2217
EcoRV	GATATC	1 cut(s)	766
EcoT14I	CCWWGG	3 cut(s)	839, 1233, 1689
EcoT22I	ATGCAT	1 cut(s)	576
ErhI	CCWWGG	3 cut(s)	839, 1233, 1689
Esp3I	CGTCTC	1 cut(s)	1057
FalI	AAGNNNNNCTT	8 cut(s)	360, 392, 1544, 1576, 1839, 1871, 2152, 2184
FaqI	GGGAC	2 cut(s)	1830, 2731
FauNDI	CATATG	1 cut(s)	1490
FbaI	TGATCA	3 cut(s)	1755, 2326, 2350
FblI	GTMKAC	3 cut(s)	162, 557, 2052
FokI	GGATG	6 cut(s)	17, 518, 598, 879, 1524, 1889
FspBI	CTAG	6 cut(s)	24, 1008, 1112, 1665, 2277, 2736
GlaI	GCGC	1 cut(s)	567
GsuI	CTGGAG	2 cut(s)	2114, 2601
HaeII	RGCGCY	1 cut(s)	569
HaeIII	GGCC	5 cut(s)	666, 1496, 2222, 2313, 2500
HapII	CCGG	3 cut(s)	50, 615, 2497
HhaI	GCGC	1 cut(s)	568
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HincII	GTYRAC	4 cut(s)	127, 163, 516, 2053
HindII	GTYRAC	4 cut(s)	127, 163, 516, 2053
HpaI	GTTAAC	2 cut(s)	127, 516
HpaII	CCGG	3 cut(s)	50, 615, 2497
HphI	GGTGA	3 cut(s)	1736, 1988, 2361
Hpy99I	CGWCG	2 cut(s)	34, 167
HpyAV	CCTTC	8 cut(s)	349, 365, 1068, 1115, 1515, 1610, 2026, 2414
HpyCH4III	ACNGT	8 cut(s)	57, 650, 659, 1162, 2050, 2377, 2569, 2790
HpyCH4IV	ACGT	1 cut(s)	165
HpyF10VI	GCNNNNNNNGC	6 cut(s)	208, 803, 844, 1570, 1938, 2310
HpySE526I	ACGT	1 cut(s)	165
HspAI	GCGC	1 cut(s)	566
Ksp22I	TGATCA	3 cut(s)	1755, 2326, 2350
KspAI	GTTAAC	2 cut(s)	127, 516
LguI	GCTCTTC	1 cut(s)	1416
LmnI	GCTCC	4 cut(s)	340, 466, 835, 2457
LweI	GCATC	5 cut(s)	414, 620, 1851, 1867, 2444
MaeI	CTAG	6 cut(s)	24, 1008, 1112, 1665, 2277, 2736
MaeII	ACGT	1 cut(s)	165
MflI	RGATCY	2 cut(s)	997, 1186
MhlI	GDGCHC	5 cut(s)	528, 889, 966, 2073, 2567
MlsI	TGGCCA	1 cut(s)	2313
MluCI	AATT	8 cut(s)	953, 1217, 1788, 1900, 1915, 2201, 2532, 2650
MluNI	TGGCCA	1 cut(s)	2313
MlyI	GAGTC	6 cut(s)	287, 404, 556, 631, 1032, 2437
MmeI	TCCRAC	3 cut(s)	12, 202, 2442
Mox20I	TGGCCA	1 cut(s)	2313
Mph1103I	ATGCAT	1 cut(s)	576
MroXI	GAANNNNTTC	2 cut(s)	17, 1410
MscI	TGGCCA	1 cut(s)	2313
MseI	TTAA	7 cut(s)	126, 153, 515, 1164, 1569, 1886, 2535
MslI	CAYNNNNRTG	8 cut(s)	531, 1244, 1719, 1824, 2001, 2042, 2256, 2744
Msp20I	TGGCCA	1 cut(s)	2313
MspI	CCGG	3 cut(s)	50, 615, 2497
MspR9I	CCNGG	2 cut(s)	50, 2219
Mva1269I	GAATGC	3 cut(s)	1685, 1932, 2626
MvaI	CCWGG	1 cut(s)	2219
MvnI	CGCG	2 cut(s)	736, 2665
MwoI	GCNNNNNNNGC	6 cut(s)	208, 803, 844, 1570, 1938, 2310
NciI	CCSGG	1 cut(s)	50
NcoI	CCATGG	1 cut(s)	839
NdeI	CATATG	1 cut(s)	1490
NheI	GCTAGC	1 cut(s)	2735
NlaIV	GGNNCC	6 cut(s)	336, 468, 837, 1049, 1633, 1840
NmuCI	GTSAC	8 cut(s)	223, 279, 1019, 1396, 1477, 1693, 1724, 2386
NsiI	ATGCAT	1 cut(s)	576
NspI	RCATGY	3 cut(s)	2069, 2301, 2471
NspV	TTCGAA	2 cut(s)	344, 2630
OliI	CACNNNNGTG	1 cut(s)	2001
PaeR7I	CTCGAG	1 cut(s)	1052
PciI	ACATGT	1 cut(s)	2065
PciSI	GCTCTTC	1 cut(s)	1416
PctI	GAATGC	3 cut(s)	1685, 1932, 2626
PdmI	GAANNNNTTC	2 cut(s)	17, 1410
PflMI	CCANNNNNTGG	1 cut(s)	2461
PleI	GAGTC	6 cut(s)	286, 403, 555, 631, 1032, 2436
PpsI	GAGTC	6 cut(s)	286, 403, 555, 631, 1032, 2436
PscI	ACATGT	1 cut(s)	2065
PshBI	ATTAAT	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	2217
PspGI	CCWGG	1 cut(s)	2217
PspN4I	GGNNCC	6 cut(s)	336, 468, 837, 1049, 1633, 1840
PspPI	GGNCC	2 cut(s)	1494, 2674
PspXI	VCTCGAGB	1 cut(s)	1052
PstI	CTGCAG	1 cut(s)	1384
PstNI	CAGNNNCTG	1 cut(s)	1870
PsuI	RGATCY	2 cut(s)	997, 1186
RsaI	GTAC	9 cut(s)	236, 483, 647, 1370, 1532, 1672, 2088, 2661, 2687
RsaNI	GTAC	9 cut(s)	235, 482, 646, 1369, 1531, 1671, 2087, 2660, 2686
RseI	CAYNNNNRTG	8 cut(s)	531, 1244, 1719, 1824, 2001, 2042, 2256, 2744
SalI	GTCGAC	2 cut(s)	161, 2051
SapI	GCTCTTC	1 cut(s)	1416
SaqAI	TTAA	7 cut(s)	126, 153, 515, 1164, 1569, 1886, 2535
Sau96I	GGNCC	2 cut(s)	1494, 2674
ScaI	AGTACT	4 cut(s)	483, 1370, 1672, 2088
SchI	GAGTC	6 cut(s)	287, 404, 556, 631, 1032, 2437
ScrFI	CCNGG	2 cut(s)	50, 2219
SduI	GDGCHC	5 cut(s)	528, 889, 966, 2073, 2567
SfaNI	GCATC	5 cut(s)	414, 620, 1851, 1867, 2444
SfcI	CTRYAG	2 cut(s)	691, 1380
Sfr274I	CTCGAG	1 cut(s)	1052
SfuI	TTCGAA	2 cut(s)	344, 2630
SinI	GGWCC	1 cut(s)	2674
SlaI	CTCGAG	1 cut(s)	1052
SmiMI	CAYNNNNRTG	8 cut(s)	531, 1244, 1719, 1824, 2001, 2042, 2256, 2744
SmlI	CTYRAG	2 cut(s)	1052, 1451
SmoI	CTYRAG	2 cut(s)	1052, 1451
SpeI	ACTAGT	3 cut(s)	23, 1007, 2276
Sse9I	AATT	8 cut(s)	953, 1217, 1788, 1900, 1915, 2201, 2532, 2650
SsiI	CCGC	6 cut(s)	215, 561, 632, 736, 847, 2663
SspMI	CTAG	6 cut(s)	24, 1008, 1112, 1665, 2277, 2736
StyD4I	CCNGG	2 cut(s)	48, 2217
StyI	CCWWGG	3 cut(s)	839, 1233, 1689
TaaI	ACNGT	8 cut(s)	57, 650, 659, 1162, 2050, 2377, 2569, 2790
TaiI	ACGT	1 cut(s)	168
TasI	AATT	8 cut(s)	953, 1217, 1788, 1900, 1915, 2201, 2532, 2650
TatI	WGTACW	8 cut(s)	234, 481, 645, 1368, 1530, 1670, 2086, 2685
TauI	GCSGC	2 cut(s)	217, 635
Tru1I	TTAA	7 cut(s)	126, 153, 515, 1164, 1569, 1886, 2535
Tru9I	TTAA	7 cut(s)	126, 153, 515, 1164, 1569, 1886, 2535
TseFI	GTSAC	8 cut(s)	223, 279, 1019, 1396, 1477, 1693, 1724, 2386
Tsp45I	GTSAC	8 cut(s)	223, 279, 1019, 1396, 1477, 1693, 1724, 2386
TspDTI	ATGAA	8 cut(s)	26, 76, 318, 507, 1110, 1446, 1629, 1894
Van91I	CCANNNNNTGG	1 cut(s)	2461
VneI	GTGCAC	1 cut(s)	2563
VpaK11BI	GGWCC	1 cut(s)	2674
VspI	ATTAAT	1 cut(s)	153
XapI	RAATTY	3 cut(s)	953, 1217, 1900
XceI	RCATGY	3 cut(s)	2069, 2301, 2471
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2021
XhoI	CTCGAG	1 cut(s)	1052
XmiI	GTMKAC	3 cut(s)	162, 557, 2052
XmnI	GAANNNNTTC	2 cut(s)	17, 1410
XspI	CTAG	6 cut(s)	24, 1008, 1112, 1665, 2277, 2736
ZrmI	AGTACT	4 cut(s)	483, 1370, 1672, 2088
Zsp2I	ATGCAT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.