Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004277

Physical Location & Seq

Genomic Coordinates Reverse (-)

5265301 .. 5269025

Gene Structure 3725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42253

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCATTAGCTGCAAAGGGTTCATCTAATCCTTGGCCAGTGATCGGAATCAGCCTCGGAACCACCTATTCATGTGTGGGTGTGTACATAAACGGCCAAGGCGATAGAATCACACCCTCTTGGAATAAAGCGCATATTAACCCAGAACGTACCCTTTTTGATATCCAGCGGCTCATAGGGAGAGAATTTAATGATATGGAGGTTCAAAGGGAGATTAAGTTGTTGCCTTATAAGGTTGTGAACATAGATGGGAAGCCTTATATTCAGGTGAAGTTTAGAGGTGAAACCAAGGTGTTTAGCCCTGAGGAAATCAGTGCTATGATATTGACTAAGATGAAGGAAACAGCTGAGGCTAGCTTATTTGGGGAAGAAGATCAAAGACGCTCTCATAACTGTTCCAGGCGTAATGCTACTAAGGATGCAGGCAAAATTGCCGGGCTCAATGTGGTTCAAGAGGAGAAGAACATATATATTGGCGGTGGTACATTTGATGTTAGCATCTTGACCATTGATGATGGTGTGATCGAGGTGATCTCTACGAGTGGAGACACTCATTTGGGAGGAGAGGATTTCAACCACAGAGTAATGGAGTATCTTATTAAGTTGATCAAGAAGCAGTACAACAGAGACATTAGCAAGGACAACAAGGCTATCTGGAAGCTTCACAAGGAATGCGAGAGGGCCAAGAGAGCCTTGTATTTCCCGCACCAGTTTTCTGTGGGGATTGAGTCTCCTTTCGATGGTATAGATTTCTCGGAATCCTTGACAAGGGAGAGGTTTGAGGAATTGAACATGGACTTGTTCAACAAGACCATGAGGATAGTGGAAAAGACTCTGCAAGATACAGGATTGAAGAAAAAGGATATTCATGAGATTGTGCTTGTTGGAGGGAGCACTAAAATTCCGAAGGTGAAGCAGTTGTTGATGGACTTGTTTAATGGGAAGGAACCAATGAAGGGACTTAATCCTGATGAGGTTGCGGCCTATGGTGCTTCAATTCATGGTGGAGTCCTCAGCGGAGAAGCTGATTATGATACTCATGTATACTGCGATTGTCATAAATACTTAAAAACTGTAGTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

361

Amino Acids

40.65

Weight (kDa)

6.57

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	14 - 150	3.2e-28	Hsp70 protein
MreB_Mbl	PF06723	145 - 313	4.1e-06	MreB/Mbl protein
HSP70	PF00012	158 - 351	5.6e-67	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09080 AT1G09080
fragaria_vesca	FvH4_6g06470
malus_domestica	MD12G1215200.v1.1
prunus_persica	Prupe.6G321700_v2.0.a1
pyrus_communis	pycom04g17760 pycom12g20120
rosa_chinensis	RchiOBHm_Chr2g0142601 RchiOBHm_Chr3g0455591 RchiOBHm_Chr3g0455611 RchiOBHm_Chr3g0455631
rosa_laevigata	RLG00000019973 RLG00000019974 RLG00000025345 RLG00000025351
rosa_multiflora	Rmu_co8491437.1_g000001 Rmu_sc0000223.1_g000003 Rmu_sc0005164.1_g000002 Rmu_sc0015502.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102460
rosa_rugosa	Rorug03G0008500 Rorug03G0008700
rosa_samantha	Rh2AG426400 Rh2BG436000 Rh2CG412900 Rh2DG445800 Rh3AG067800 Rh3AG068000 Rh3DG070300
rosa_wichuraiana	Rw2G034940 Rw3G005440 Rw3G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
AccI	GTMKAC	1 cut(s)	1044
AciI	CCGC	5 cut(s)	169, 477, 704, 980, 1017
AcoI	YGGCCR	2 cut(s)	35, 94
AcsI	RAATTY	2 cut(s)	185, 900
AfaI	GTAC	4 cut(s)	86, 151, 484, 620
AfiI	CCNNNNNNNGG	4 cut(s)	44, 740, 768, 956
AgsI	TTSAA	7 cut(s)	206, 452, 574, 790, 805, 853, 996
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	5 cut(s)	11, 347, 357, 661, 1025
AluI	AGCT	5 cut(s)	11, 347, 357, 661, 1025
Alw21I	GWGCWC	1 cut(s)	896
Alw26I	GTCTC	3 cut(s)	540, 621, 735
AoxI	GGCC	4 cut(s)	35, 94, 681, 981
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	2 cut(s)	185, 900
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	681
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	4 cut(s)	280, 293, 541, 922
AsuNHI	GCTAGC	1 cut(s)	353
AxyI	CCTNAGG	1 cut(s)	303
BaeI	ACNNNNGTAYC	2 cut(s)	1026, 1059
BalI	TGGCCA	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	896
BbvCI	CCTCAGC	2 cut(s)	348, 1013
BccI	CCATC	4 cut(s)	242, 509, 734, 919
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	400
BclI	TGATCA	1 cut(s)	606
BcnI	CCSGG	1 cut(s)	436
BcoDI	GTCTC	3 cut(s)	540, 621, 735
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	1074
BisI	GCNGC	3 cut(s)	12, 170, 981
BlsI	GCNGC	3 cut(s)	13, 171, 982
Bme1390I	CCNGG	2 cut(s)	400, 436
BmgT120I	GGNCC	1 cut(s)	681
BmiI	GGNNCC	2 cut(s)	61, 948
BmrFI	CCNGG	2 cut(s)	400, 436
BmsI	GCATC	2 cut(s)	409, 507
BmtI	GCTAGC	1 cut(s)	357
BplI	GAGNNNNNCTC	2 cut(s)	518, 550
Bpu10I	CCTNAGC	2 cut(s)	348, 1013
BpuMI	CCSGG	1 cut(s)	436
BsaBI	GATNNNNATC	1 cut(s)	47
BsaJI	CCNNGG	4 cut(s)	32, 55, 97, 288
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 740, 768, 956
Bse1I	ACTGG	2 cut(s)	38, 709
Bse21I	CCTNAGG	1 cut(s)	303
Bse8I	GATNNNNATC	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	400
BseDI	CCNNGG	4 cut(s)	32, 55, 97, 288
BseGI	GGATG	1 cut(s)	424
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	4 cut(s)	44, 740, 768, 956
BseMII	CTCAG	3 cut(s)	294, 339, 1027
BseNI	ACTGG	2 cut(s)	38, 709
BseRI	GAGGAG	2 cut(s)	470, 576
BshFI	GGCC	4 cut(s)	37, 96, 683, 983
BsiHKAI	GWGCWC	1 cut(s)	896
BsiSI	CCGG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	972
BslI	CCNNNNNNNGG	4 cut(s)	44, 740, 768, 956
BsmAI	GTCTC	3 cut(s)	540, 621, 735
BsmFI	GGGAC	1 cut(s)	972
BsmI	GAATGC	1 cut(s)	677
BsnI	GGCC	4 cut(s)	37, 96, 683, 983
Bsp1286I	GDGCHC	2 cut(s)	441, 896
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	5 cut(s)	42, 373, 522, 531, 606
BspACI	CCGC	5 cut(s)	169, 477, 704, 980, 1017
BspANI	GGCC	4 cut(s)	37, 96, 683, 983
BspCNI	CTCAG	3 cut(s)	295, 340, 1026
BspHI	TCATGA	1 cut(s)	868
BspLI	GGNNCC	2 cut(s)	61, 948
BspOI	GCTAGC	1 cut(s)	357
BsrGI	TGTACA	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	38, 709
BssECI	CCNNGG	4 cut(s)	32, 55, 97, 288
BssMI	GATC	5 cut(s)	42, 373, 522, 531, 606
BssNAI	GTATAC	1 cut(s)	1045
BssT1I	CCWWGG	3 cut(s)	32, 97, 288
Bst1107I	GTATAC	1 cut(s)	1045
Bst2UI	CCWGG	1 cut(s)	400
Bst4CI	ACNGT	2 cut(s)	395, 1075
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	355, 424
BstDEI	CTNAG	5 cut(s)	303, 330, 348, 414, 1013
BstENI	CCTNNNNNAGG	1 cut(s)	766
BstF5I	GGATG	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	5 cut(s)	45, 376, 525, 534, 609
BstMAI	GTCTC	3 cut(s)	540, 621, 735
BstMBI	GATC	5 cut(s)	42, 373, 522, 531, 606
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 689, 989
BstNI	CCWGG	1 cut(s)	400
BstSCI	CCNGG	2 cut(s)	398, 434
BstSFI	CTRYAG	1 cut(s)	1074
BstZ17I	GTATAC	1 cut(s)	1045
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	4 cut(s)	37, 96, 683, 983
BtsCI	GGATG	1 cut(s)	424
BtsIMutI	CAGTG	2 cut(s)	45, 319
Cac8I	GCNNGC	2 cut(s)	355, 424
CciI	TCATGA	1 cut(s)	868
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	681
CseI	GACGC	1 cut(s)	390
Csp6I	GTAC	4 cut(s)	85, 150, 483, 619
CviAII	CATG	6 cut(s)	72, 793, 814, 869, 1001, 1040
CviQI	GTAC	4 cut(s)	85, 150, 483, 619
DdeI	CTNAG	5 cut(s)	303, 330, 348, 414, 1013
DpnI	GATC	5 cut(s)	44, 375, 524, 533, 608
DpnII	GATC	5 cut(s)	42, 373, 522, 531, 606
EaeI	YGGCCR	2 cut(s)	35, 94
Eco130I	CCWWGG	3 cut(s)	32, 97, 288
Eco24I	GRGCYC	1 cut(s)	441
Eco32I	GATATC	1 cut(s)	163
Eco81I	CCTNAGG	1 cut(s)	303
EcoNI	CCTNNNNNAGG	1 cut(s)	766
EcoRII	CCWGG	1 cut(s)	398
EcoRV	GATATC	1 cut(s)	163
EcoT14I	CCWWGG	3 cut(s)	32, 97, 288
EcoT38I	GRGCYC	1 cut(s)	441
ErhI	CCWWGG	3 cut(s)	32, 97, 288
FaeI	CATG	6 cut(s)	75, 796, 817, 872, 1004, 1043
FalI	AAGNNNNNCTT	2 cut(s)	677, 709
FaqI	GGGAC	1 cut(s)	972
FatI	CATG	6 cut(s)	71, 792, 813, 868, 1000, 1039
FauI	CCCGC	1 cut(s)	711
FbaI	TGATCA	1 cut(s)	606
FblI	GTMKAC	1 cut(s)	1044
Fnu4HI	GCNGC	3 cut(s)	12, 170, 981
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	3 cut(s)	12, 170, 981
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	3 cut(s)	12, 170, 981
HaeIII	GGCC	4 cut(s)	37, 96, 683, 983
HapII	CCGG	1 cut(s)	435
HgaI	GACGC	1 cut(s)	390
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	6 cut(s)	75, 796, 817, 872, 1004, 1043
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	659
HinfI	GANTC	6 cut(s)	48, 108, 728, 758, 832, 1008
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	4 cut(s)	280, 293, 541, 922
Hpy166II	GTNNAC	3 cut(s)	85, 241, 1045
Hpy188I	TCNGA	4 cut(s)	47, 59, 757, 906
Hpy188III	TCNNGA	6 cut(s)	452, 502, 610, 655, 869, 968
Hpy8I	GTNNAC	3 cut(s)	85, 241, 1045
HpyAV	CCTTC	4 cut(s)	331, 901, 937, 949
HpyCH4III	ACNGT	2 cut(s)	395, 1075
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	3 cut(s)	14, 422, 838
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 689, 989
HpyF3I	CTNAG	5 cut(s)	303, 330, 348, 414, 1013
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	6 cut(s)	75, 796, 817, 872, 1004, 1043
HspAI	GCGC	1 cut(s)	131
Ksp22I	TGATCA	1 cut(s)	606
Kzo9I	GATC	5 cut(s)	42, 373, 522, 531, 606
LmnI	GCTCC	1 cut(s)	891
LweI	GCATC	2 cut(s)	409, 507
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	1 cut(s)	148
MalI	GATC	5 cut(s)	44, 375, 524, 533, 608
MboI	GATC	5 cut(s)	42, 373, 522, 531, 606
MboII	GAAGA	4 cut(s)	380, 383, 472, 865
MhlI	GDGCHC	2 cut(s)	441, 896
MlsI	TGGCCA	1 cut(s)	37
MluCI	AATT	5 cut(s)	185, 429, 785, 900, 996
MluNI	TGGCCA	1 cut(s)	37
MlyI	GAGTC	3 cut(s)	737, 826, 1017
MmeI	TCCRAC	1 cut(s)	865
Mox20I	TGGCCA	1 cut(s)	37
MscI	TGGCCA	1 cut(s)	37
MseI	TTAA	7 cut(s)	138, 189, 216, 600, 936, 963, 1067
Msp20I	TGGCCA	1 cut(s)	37
MspA1I	CMGCKG	3 cut(s)	169, 347, 1017
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	2 cut(s)	400, 436
Mva1269I	GAATGC	1 cut(s)	677
MvaI	CCWGG	1 cut(s)	400
MwoI	GCNNNNNNNGC	3 cut(s)	11, 689, 989
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	5 cut(s)	42, 373, 522, 531, 606
NheI	GCTAGC	1 cut(s)	353
NlaIII	CATG	6 cut(s)	75, 796, 817, 872, 1004, 1043
NlaIV	GGNNCC	2 cut(s)	61, 948
PagI	TCATGA	1 cut(s)	868
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	677
PfeI	GAWTC	3 cut(s)	48, 108, 758
PkrI	GCNGC	3 cut(s)	13, 171, 982
PleI	GAGTC	3 cut(s)	736, 826, 1016
PpsI	GAGTC	3 cut(s)	736, 826, 1016
PsiI	TTATAA	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PspN4I	GGNNCC	2 cut(s)	61, 948
PspPI	GGNCC	1 cut(s)	681
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	4 cut(s)	86, 151, 484, 620
RsaNI	GTAC	4 cut(s)	85, 150, 483, 619
SaqAI	TTAA	7 cut(s)	138, 189, 216, 600, 936, 963, 1067
SatI	GCNGC	3 cut(s)	12, 170, 981
Sau3AI	GATC	5 cut(s)	42, 373, 522, 531, 606
Sau96I	GGNCC	1 cut(s)	681
SchI	GAGTC	3 cut(s)	737, 826, 1017
ScrFI	CCNGG	2 cut(s)	400, 436
SduI	GDGCHC	2 cut(s)	441, 896
SfaNI	GCATC	2 cut(s)	409, 507
SfcI	CTRYAG	1 cut(s)	1074
Sse9I	AATT	5 cut(s)	185, 429, 785, 900, 996
SsiI	CCGC	5 cut(s)	169, 477, 704, 980, 1017
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	2 cut(s)	398, 434
StyI	CCWWGG	3 cut(s)	32, 97, 288
TaaI	ACNGT	2 cut(s)	395, 1075
TaiI	ACGT	1 cut(s)	151
TaqI	TCGA	2 cut(s)	525, 738
TasI	AATT	5 cut(s)	185, 429, 785, 900, 996
TatI	WGTACW	2 cut(s)	84, 618
TauI	GCSGC	2 cut(s)	172, 983
TfiI	GAWTC	3 cut(s)	48, 108, 758
Tru1I	TTAA	7 cut(s)	138, 189, 216, 600, 936, 963, 1067
Tru9I	TTAA	7 cut(s)	138, 189, 216, 600, 936, 963, 1067
TscAI	CASTG	2 cut(s)	45, 319
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	6 cut(s)	12, 60, 350, 857, 968, 989
TspRI	CASTG	2 cut(s)	45, 319
XagI	CCTNNNNNAGG	1 cut(s)	766
XapI	RAATTY	2 cut(s)	185, 900
XcmI	CCANNNNNNNNNTGG	1 cut(s)	820
XmiI	GTMKAC	1 cut(s)	1044
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.