Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004277

Physical Location & Seq

Genomic Coordinates Forward (+)

45190367 .. 45191329

Gene Structure 963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025345

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAGTTGTGTAAAAATATTAAAGCAAGACCGAAAGATAGGAACTGGGAAGCCTTATATTCAGGTGAAGTTTAGAGGTGAAATCAAGGTGTTTAGCCCTGAGAAAATCAGTGCTATGATATTGACTAAGATGAAGGAAACAGCTGAGGGTTATTTAGGGAAGAAGATCAAATACGCTGTCATAACTGTTCCAGCTTATTTCAATGATGCACAAAGACAGGCTACTAAGGATGCAGGCAAAATTGCCGGGCTCAAAGTGGATCGAGTAATTAATGAGCCCACGGCTGCGGCCATAGCCCATGGTATTGACAAGAATAAGGAGGAGAAGAACATATTGGTTGACCTTGGCGGTGGTACATTTGATATTAGCATCTTGACCATTGATGATGGTGTGATCGAGGTGATCTCGACGAGTGGAGGCACTCATTTGGGAGGAGAGGATTTCAACCAGAGAGTAATGGAGTATCTTATTAAGTTGATCGAGAAGAAGTACAACAGAGACATTAGCAAGGACAACAAGGCTCTCTGGAAGCTTCACAAGGCATGCGAGACGGCCAATGGAGCCTTGTTTTTCCTGCACCAGTTCTCTGTGGAGATTGAGTCTCTTTTCGATGGTACAGACTTGTTCAACAAGACCATGGGGATAGTGGAAAAGACTCTGCAAGATGGAGGATTGAAGAAAAAGGATATTCATGAGATTGTGCTTGTTGGAGGGAGCACTAAAATTCCGAAGGTGAAGCAGTTGTTTATTGATGGACTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

255

Amino Acids

28.09

Weight (kDa)

9.05

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	15 - 248	1.6e-87	Hsp70 protein
MreB_Mbl	PF06723	38 - 170	8.6e-15	MreB/Mbl protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09080 AT1G09080
fragaria_vesca	FvH4_6g06470
malus_domestica	MD12G1215200.v1.1
prunus_persica	Prupe.6G321700_v2.0.a1
pyrus_communis	pycom04g17760 pycom12g20120
rosa_chinensis	RchiOBHm_Chr2g0142601 RchiOBHm_Chr3g0455591 RchiOBHm_Chr3g0455611 RchiOBHm_Chr3g0455631
rosa_laevigata	RLG00000019973 RLG00000019974 RLG00000025345 RLG00000025351
rosa_multiflora	Rmu_co8491437.1_g000001 Rmu_sc0000223.1_g000003 Rmu_sc0005164.1_g000002 Rmu_sc0015502.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102460
rosa_rugosa	Rorug03G0008500 Rorug03G0008700
rosa_samantha	Rh2AG426400 Rh2BG436000 Rh2CG412900 Rh2DG445800 Rh3AG067800 Rh3AG068000 Rh3DG070300
rosa_wichuraiana	Rw2G034940 Rw3G005440 Rw3G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	287, 348
AclWI	GGATC	1 cut(s)	267
AcoI	YGGCCR	2 cut(s)	288, 552
AcsI	RAATTY	1 cut(s)	723
AfaI	GTAC	3 cut(s)	355, 491, 616
AgsI	TTSAA	4 cut(s)	202, 445, 628, 676
AjuI	GAANNNNNNNTTGG	2 cut(s)	317, 349
AluBI	AGCT	3 cut(s)	143, 194, 532
AluI	AGCT	3 cut(s)	143, 194, 532
Alw21I	GWGCWC	1 cut(s)	719
Alw26I	GTCTC	3 cut(s)	492, 542, 606
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	2 cut(s)	288, 552
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	723
ArsI	GACNNNNNNTTYG	2 cut(s)	162, 194
AseI	ATTAAT	1 cut(s)	270
AsuC2I	CCSGG	1 cut(s)	247
AsuHPI	GGTGA	4 cut(s)	76, 89, 412, 745
BanII	GRGCYC	2 cut(s)	252, 279
BarI	GAAGNNNNNNTAC	2 cut(s)	155, 187
Bbv12I	GWGCWC	1 cut(s)	719
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	4 cut(s)	380, 605, 659, 746
BceAI	ACGGC	2 cut(s)	297, 567
BcnI	CCSGG	1 cut(s)	247
BcoDI	GTCTC	3 cut(s)	492, 542, 606
BisI	GCNGC	2 cut(s)	285, 288
BlsI	GCNGC	2 cut(s)	286, 289
Bme1390I	CCNGG	1 cut(s)	247
BmiI	GGNNCC	1 cut(s)	562
BmrFI	CCNGG	1 cut(s)	247
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	3 cut(s)	196, 220, 378
BmuI	ACTGGG	1 cut(s)	54
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
Bpu10I	CCTNAGC	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	247
BsaJI	CCNNGG	4 cut(s)	279, 298, 343, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	584, 614
Bse1I	ACTGG	2 cut(s)	49, 580
BseDI	CCNNGG	4 cut(s)	279, 298, 343, 636
BseGI	GGATG	1 cut(s)	235
BseMII	CTCAG	2 cut(s)	90, 135
BseNI	ACTGG	2 cut(s)	49, 580
BseRI	GAGGAG	2 cut(s)	335, 447
BseXI	GCAGC	1 cut(s)	271
BsgI	GTGCAG	1 cut(s)	560
BshFI	GGCC	2 cut(s)	290, 554
BsiHKAI	GWGCWC	1 cut(s)	719
BsiSI	CCGG	1 cut(s)	246
BsmAI	GTCTC	3 cut(s)	492, 542, 606
BsmBI	CGTCTC	1 cut(s)	542
BsnI	GGCC	2 cut(s)	290, 554
Bsp1286I	GDGCHC	3 cut(s)	252, 279, 719
Bsp143I	GATC	5 cut(s)	165, 259, 393, 402, 477
Bsp19I	CCATGG	2 cut(s)	298, 636
BspACI	CCGC	2 cut(s)	287, 348
BspANI	GGCC	2 cut(s)	290, 554
BspCNI	CTCAG	2 cut(s)	91, 136
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	1 cut(s)	562
BspPI	GGATC	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	49, 580
BssECI	CCNNGG	4 cut(s)	279, 298, 343, 636
BssMI	GATC	5 cut(s)	165, 259, 393, 402, 477
BssT1I	CCWWGG	3 cut(s)	298, 343, 636
Bst4CI	ACNGT	1 cut(s)	187
BstC8I	GCNNGC	2 cut(s)	235, 544
BstDEI	CTNAG	4 cut(s)	99, 126, 144, 225
BstDSI	CCRYGG	3 cut(s)	279, 298, 636
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	5 cut(s)	168, 262, 396, 405, 480
BstMAI	GTCTC	3 cut(s)	492, 542, 606
BstMBI	GATC	5 cut(s)	165, 259, 393, 402, 477
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 560
BstNSI	RCATGY	1 cut(s)	546
BstSCI	CCNGG	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	290, 554
BtgI	CCRYGG	3 cut(s)	279, 298, 636
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	2 cut(s)	235, 544
CciI	TCATGA	1 cut(s)	691
Csp6I	GTAC	3 cut(s)	354, 490, 615
CviAII	CATG	4 cut(s)	299, 543, 637, 692
CviQI	GTAC	3 cut(s)	354, 490, 615
DdeI	CTNAG	4 cut(s)	99, 126, 144, 225
DpnI	GATC	5 cut(s)	167, 261, 395, 404, 479
DpnII	GATC	5 cut(s)	165, 259, 393, 402, 477
EaeI	YGGCCR	2 cut(s)	288, 552
Eco130I	CCWWGG	3 cut(s)	298, 343, 636
Eco24I	GRGCYC	2 cut(s)	252, 279
EcoT14I	CCWWGG	3 cut(s)	298, 343, 636
EcoT38I	GRGCYC	2 cut(s)	252, 279
ErhI	CCWWGG	3 cut(s)	298, 343, 636
Esp3I	CGTCTC	1 cut(s)	542
FaeI	CATG	4 cut(s)	302, 546, 640, 695
FaiI	YATR	9 cut(s)	57, 116, 182, 293, 300, 332, 544, 638, 693
FatI	CATG	4 cut(s)	298, 542, 636, 691
Fnu4HI	GCNGC	2 cut(s)	285, 288
FokI	GGATG	1 cut(s)	242
FriOI	GRGCYC	2 cut(s)	252, 279
Fsp4HI	GCNGC	2 cut(s)	285, 288
GluI	GCNGC	2 cut(s)	285, 288
HaeIII	GGCC	2 cut(s)	290, 554
HapII	CCGG	1 cut(s)	246
Hin1II	CATG	4 cut(s)	302, 546, 640, 695
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	2 cut(s)	599, 655
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	4 cut(s)	76, 89, 412, 745
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	1 cut(s)	729
Hpy188III	TCNNGA	5 cut(s)	373, 406, 481, 526, 692
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	1 cut(s)	412
HpyAV	CCTTC	2 cut(s)	127, 724
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	4 cut(s)	209, 233, 577, 661
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 560
HpyF3I	CTNAG	4 cut(s)	99, 126, 144, 225
Hsp92II	CATG	4 cut(s)	302, 546, 640, 695
Kzo9I	GATC	5 cut(s)	165, 259, 393, 402, 477
LmnI	GCTCC	2 cut(s)	560, 714
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	3 cut(s)	196, 220, 378
MalI	GATC	5 cut(s)	167, 261, 395, 404, 479
MboI	GATC	5 cut(s)	165, 259, 393, 402, 477
MboII	GAAGA	5 cut(s)	172, 175, 337, 496, 688
MhlI	GDGCHC	3 cut(s)	252, 279, 719
MluCI	AATT	3 cut(s)	240, 267, 723
MlyI	GAGTC	2 cut(s)	608, 649
MmeI	TCCRAC	1 cut(s)	688
MnlI	CCTC	9 cut(s)	68, 139, 313, 391, 410, 425, 430, 662, 704
MseI	TTAA	3 cut(s)	20, 270, 471
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	2 cut(s)	293, 560
NciI	CCSGG	1 cut(s)	247
NcoI	CCATGG	2 cut(s)	298, 636
NdeII	GATC	5 cut(s)	165, 259, 393, 402, 477
NlaIII	CATG	4 cut(s)	302, 546, 640, 695
NlaIV	GGNNCC	1 cut(s)	562
NspI	RCATGY	1 cut(s)	546
PaeI	GCATGC	1 cut(s)	546
PagI	TCATGA	1 cut(s)	691
PkrI	GCNGC	2 cut(s)	286, 289
PleI	GAGTC	2 cut(s)	607, 649
PpsI	GAGTC	2 cut(s)	607, 649
PshBI	ATTAAT	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	562
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	3 cut(s)	355, 491, 616
RsaNI	GTAC	3 cut(s)	354, 490, 615
SaqAI	TTAA	3 cut(s)	20, 270, 471
SatI	GCNGC	2 cut(s)	285, 288
Sau3AI	GATC	5 cut(s)	165, 259, 393, 402, 477
SchI	GAGTC	2 cut(s)	608, 649
ScrFI	CCNGG	1 cut(s)	247
SduI	GDGCHC	3 cut(s)	252, 279, 719
SetI	ASST	9 cut(s)	66, 79, 90, 145, 196, 345, 402, 534, 735
SfaNI	GCATC	3 cut(s)	196, 220, 378
SphI	GCATGC	1 cut(s)	546
Sse9I	AATT	3 cut(s)	240, 267, 723
SsiI	CCGC	2 cut(s)	287, 348
SspI	AATATT	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	245
StyI	CCWWGG	3 cut(s)	298, 343, 636
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	5 cut(s)	262, 396, 407, 480, 609
TaqII	GACCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	240, 267, 723
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	1 cut(s)	290
Tru1I	TTAA	3 cut(s)	20, 270, 471
Tru9I	TTAA	3 cut(s)	20, 270, 471
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	146, 680
TspRI	CASTG	1 cut(s)	115
VspI	ATTAAT	1 cut(s)	270
XapI	RAATTY	1 cut(s)	723
XceI	RCATGY	1 cut(s)	546
XcmI	CCANNNNNNNNNTGG	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.