Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015502.1

Orthogroup ID

OG0004277

Physical Location & Seq

Genomic Coordinates Forward (+)

9220 .. 10621

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015502.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atggcgattctgcttttctttatcttggtcacaggaacttcgtctggaatggcattcaccggtggaaacaatgctgcaatgttcatgaagatgccggaaacagctgaggggcaggctgctcaggatgcaagcaccattgctgagcatattgaagaaaaggatatactggtttataatcttggagggggtgcattagatgtgagtatcgtgcacattgataaaggtctttttgaagtaatggcgacaagtggagacattcacttgggaggtaggatctttgacgacagactggttgactttttcatcacattgatcacgtgcattagatgtgagtatcgtgcacattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

115

Amino Acids

12.46

Weight (kDa)

4.68

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09080 AT1G09080
fragaria_vesca	FvH4_6g06470
malus_domestica	MD12G1215200.v1.1
prunus_persica	Prupe.6G321700_v2.0.a1
pyrus_communis	pycom04g17760 pycom12g20120
rosa_chinensis	RchiOBHm_Chr2g0142601 RchiOBHm_Chr3g0455591 RchiOBHm_Chr3g0455611 RchiOBHm_Chr3g0455631
rosa_laevigata	RLG00000019973 RLG00000019974 RLG00000025345 RLG00000025351
rosa_multiflora	Rmu_co8491437.1_g000001 Rmu_sc0000223.1_g000003 Rmu_sc0005164.1_g000002 Rmu_sc0015502.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102460
rosa_rugosa	Rorug03G0008500 Rorug03G0008700
rosa_samantha	Rh2AG426400 Rh2BG436000 Rh2CG412900 Rh2DG445800 Rh3AG067800 Rh3AG068000 Rh3DG070300
rosa_wichuraiana	Rw2G034940 Rw3G005440 Rw3G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	174
AclWI	GGATC	1 cut(s)	281
AcvI	CACGTG	1 cut(s)	318
AgeI	ACCGGT	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	152, 233
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
Alw21I	GWGCWC	2 cut(s)	213, 343
Alw26I	GTCTC	1 cut(s)	246
Alw44I	GTGCAC	2 cut(s)	209, 339
AlwI	GGATC	1 cut(s)	281
ApaLI	GTGCAC	2 cut(s)	209, 339
ApeKI	GCWGC	2 cut(s)	74, 116
AsiGI	ACCGGT	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	49
BaeGI	GKGCMC	2 cut(s)	213, 343
BbrPI	CACGTG	1 cut(s)	318
Bbv12I	GWGCWC	2 cut(s)	213, 343
BbvCI	CCTCAGC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	61, 103
BclI	TGATCA	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	246
BisI	GCNGC	2 cut(s)	75, 117
BlpI	GCTNAGC	1 cut(s)	141
BlsI	GCNGC	2 cut(s)	76, 118
BmsI	GCATC	2 cut(s)	81, 115
Bpu10I	CCTNAGC	2 cut(s)	105, 120
Bpu1102I	GCTNAGC	1 cut(s)	141
BsaAI	YACGTR	1 cut(s)	318
BsaWI	WCCGGW	1 cut(s)	59
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	2 cut(s)	171, 294
Bse3DI	GCAATG	2 cut(s)	84, 135
BseGI	GGATG	1 cut(s)	130
BseMI	GCAATG	2 cut(s)	84, 135
BseMII	CTCAG	3 cut(s)	96, 132, 134
BseNI	ACTGG	2 cut(s)	171, 294
BseSI	GKGCMC	2 cut(s)	213, 343
BseXI	GCAGC	2 cut(s)	61, 103
BshTI	ACCGGT	1 cut(s)	59
BsiHKAI	GWGCWC	2 cut(s)	213, 343
BsiSI	CCGG	2 cut(s)	60, 95
BsmAI	GTCTC	1 cut(s)	246
BsmI	GAATGC	1 cut(s)	53
Bsp1286I	GDGCHC	2 cut(s)	213, 343
Bsp143I	GATC	2 cut(s)	273, 312
Bsp1720I	GCTNAGC	1 cut(s)	141
BspCNI	CTCAG	3 cut(s)	97, 133, 133
BspHI	TCATGA	1 cut(s)	84
BspPI	GGATC	1 cut(s)	281
BsrDI	GCAATG	2 cut(s)	84, 135
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	171, 294
BssAI	RCCGGY	1 cut(s)	59
BssMI	GATC	2 cut(s)	273, 312
BstBAI	YACGTR	1 cut(s)	318
BstC8I	GCNNGC	2 cut(s)	114, 130
BstDEI	CTNAG	3 cut(s)	105, 120, 141
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	2 cut(s)	276, 315
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	2 cut(s)	273, 312
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstSLI	GKGCMC	2 cut(s)	213, 343
BstV1I	GCAGC	2 cut(s)	61, 103
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	130
Cac8I	GCNNGC	2 cut(s)	114, 130
CciI	TCATGA	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	59
CspAI	ACCGGT	1 cut(s)	59
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	2 cut(s)	104, 116
CviKI_1	RGCY	2 cut(s)	104, 116
DdeI	CTNAG	3 cut(s)	105, 120, 141
DpnI	GATC	2 cut(s)	275, 314
DpnII	GATC	2 cut(s)	273, 312
Eco72I	CACGTG	1 cut(s)	318
FaeI	CATG	1 cut(s)	88
FaiI	YATR	4 cut(s)	86, 147, 164, 174
FatI	CATG	1 cut(s)	84
FbaI	TGATCA	1 cut(s)	312
Fnu4HI	GCNGC	2 cut(s)	75, 117
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	2 cut(s)	75, 117
GluI	GCNGC	2 cut(s)	75, 117
HapII	CCGG	2 cut(s)	60, 95
Hin1II	CATG	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	2 cut(s)	60, 95
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	3 cut(s)	211, 295, 341
Hpy188III	TCNNGA	3 cut(s)	45, 85, 122
Hpy8I	GTNNAC	3 cut(s)	211, 295, 341
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	6 cut(s)	77, 128, 191, 211, 321, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	3 cut(s)	105, 120, 141
HpySE526I	ACGT	1 cut(s)	317
Hsp92II	CATG	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	2 cut(s)	273, 312
LpnPI	CCDG	8 cut(s)	18, 30, 73, 98, 107, 108, 152, 275
Lsp1109I	GCAGC	2 cut(s)	61, 103
LweI	GCATC	2 cut(s)	81, 115
MaeII	ACGT	1 cut(s)	317
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	2 cut(s)	275, 314
MboI	GATC	2 cut(s)	273, 312
MboII	GAAGA	2 cut(s)	100, 164
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	2 cut(s)	213, 343
MnlI	CCTC	3 cut(s)	100, 176, 260
MslI	CAYNNNNRTG	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	2 cut(s)	60, 95
Mva1269I	GAATGC	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeII	GATC	2 cut(s)	273, 312
NlaIII	CATG	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	28
PagI	TCATGA	1 cut(s)	84
PctI	GAATGC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	7
PinAI	ACCGGT	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	76, 118
PmaCI	CACGTG	1 cut(s)	318
PmlI	CACGTG	1 cut(s)	318
Ppu21I	YACGTR	1 cut(s)	318
PsiI	TTATAA	1 cut(s)	174
PspCI	CACGTG	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	273
PvuII	CAGCTG	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	89
SatI	GCNGC	2 cut(s)	75, 117
Sau3AI	GATC	2 cut(s)	273, 312
SduI	GDGCHC	2 cut(s)	213, 343
SetI	ASST	4 cut(s)	106, 226, 271, 320
SfaNI	GCATC	2 cut(s)	81, 115
SgrAI	CRCCGGYG	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	89
TaiI	ACGT	1 cut(s)	320
TfiI	GAWTC	1 cut(s)	7
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	2 cut(s)	74, 116
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	3 cut(s)	73, 101, 292
VneI	GTGCAC	2 cut(s)	209, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.