Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005164.1

Orthogroup ID

OG0004277

Physical Location & Seq

Genomic Coordinates Forward (+)

9526 .. 11242

Gene Structure 1717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005164.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

atggaggtgaagaagaccaaagcggtgtcatcgatatttctgctcgtctttgtttcagacttcttgtgtgggatggcattagctgcaaagggttcatctaatccttggccagtgatcggaatcagcctcggaaccacctattcatgtgtggggagagaatttaatgatatggaggttcaaagggagattaagctgttgccttataaggttgtgaacatagatgggaagccttatattcaggtgaagtttagccctgaggtgtttagccctgaggaaatcagtgctatgatattgactaagatgaaggaaacagctgaggctagcttatttggggaagaagatcaaagacgctctcataactgttccaggcaggctactaaggatgcaggcaaaattgccgggctcaatgtggttcaagtaattaatgagcccaaggccgcggccattgcctatggtcttgacaagaataaggaggagaagaacatatatattggcggtggtacatttgatgttagcatcttgaccattgatgatgtgatcgaggtgatctctactagtggagacactaatttgggaggagaggatttcaaccacagagtaatggagtatcttattaagttgatcaagaagcagtacaacagagacattagcaaggacaacaaggctatctggaagcttcacaaggaatgcgagagggccaagagagccttgtatttcccgcaccagttttctgtggggattgagtctcctttcgatggattgaagaaaaaggatattcatgagattgtgcttgttggagggagcactaaaattccgaaggtgaagcagttgttgatggacttgtttaatgggaaggaaccaatgaagggacttaatcctgatgaggttgcggcctatggtgcttcaattcatggtggagtcctcagcggagaagctgattatgatactcatgtatactgcgattgtcataaatacttaaaaagtgtagttagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

331

Amino Acids

36.71

Weight (kDa)

6.72

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09080 AT1G09080
fragaria_vesca	FvH4_6g06470
malus_domestica	MD12G1215200.v1.1
prunus_persica	Prupe.6G321700_v2.0.a1
pyrus_communis	pycom04g17760 pycom12g20120
rosa_chinensis	RchiOBHm_Chr2g0142601 RchiOBHm_Chr3g0455591 RchiOBHm_Chr3g0455611 RchiOBHm_Chr3g0455631
rosa_laevigata	RLG00000019973 RLG00000019974 RLG00000025345 RLG00000025351
rosa_multiflora	Rmu_co8491437.1_g000001 Rmu_sc0000223.1_g000003 Rmu_sc0005164.1_g000002 Rmu_sc0015502.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102460
rosa_rugosa	Rorug03G0008500 Rorug03G0008700
rosa_samantha	Rh2AG426400 Rh2BG436000 Rh2CG412900 Rh2DG445800 Rh3AG067800 Rh3AG068000 Rh3DG070300
rosa_wichuraiana	Rw2G034940 Rw3G005440 Rw3G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	204
AccI	GTMKAC	1 cut(s)	954
AccII	CGCG	1 cut(s)	440
AciI	CCGC	7 cut(s)	23, 438, 440, 495, 719, 890, 927
AcoI	YGGCCR	2 cut(s)	107, 441
AcsI	RAATTY	2 cut(s)	158, 810
AfaI	GTAC	2 cut(s)	502, 635
AfiI	CCNNNNNNNGG	3 cut(s)	116, 755, 866
AgsI	TTSAA	5 cut(s)	179, 416, 589, 763, 906
AhlI	ACTAGT	1 cut(s)	554
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	6 cut(s)	83, 193, 314, 324, 676, 935
AluI	AGCT	6 cut(s)	83, 193, 314, 324, 676, 935
Alw21I	GWGCWC	1 cut(s)	806
Alw26I	GTCTC	3 cut(s)	555, 636, 750
AoxI	GGCC	5 cut(s)	107, 435, 441, 696, 891
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	2 cut(s)	158, 810
AseI	ATTAAT	1 cut(s)	423
AspS9I	GGNCC	1 cut(s)	696
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	4 cut(s)	19, 253, 556, 832
AsuNHI	GCTAGC	1 cut(s)	320
AxyI	CCTNAGG	2 cut(s)	255, 270
BaeI	ACNNNNGTAYC	2 cut(s)	936, 969
BalI	TGGCCA	1 cut(s)	109
BanII	GRGCYC	2 cut(s)	405, 432
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	806
BbvCI	CCTCAGC	2 cut(s)	315, 923
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	4 cut(s)	67, 215, 749, 829
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BciT130I	CCWGG	1 cut(s)	367
BclI	TGATCA	1 cut(s)	621
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	3 cut(s)	555, 636, 750
BcuI	ACTAGT	1 cut(s)	554
BfaI	CTAG	2 cut(s)	321, 555
BisI	GCNGC	4 cut(s)	84, 438, 441, 891
BlsI	GCNGC	4 cut(s)	85, 439, 442, 892
Bme1390I	CCNGG	2 cut(s)	367, 400
BmgT120I	GGNCC	1 cut(s)	696
BmiI	GGNNCC	2 cut(s)	133, 858
BmrFI	CCNGG	2 cut(s)	367, 400
BmsI	GCATC	2 cut(s)	373, 525
BmtI	GCTAGC	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	533, 565
Bpu10I	CCTNAGC	2 cut(s)	315, 923
BpuMI	CCSGG	1 cut(s)	400
Bsa29I	ATCGAT	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	119
BsaJI	CCNNGG	4 cut(s)	104, 127, 432, 438
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 755, 866
Bse1I	ACTGG	2 cut(s)	110, 724
Bse21I	CCTNAGG	2 cut(s)	255, 270
Bse3DI	GCAATG	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	367
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	4 cut(s)	104, 127, 432, 438
BseGI	GGATG	2 cut(s)	78, 388
BseJI	GATNNNNATC	1 cut(s)	119
BseLI	CCNNNNNNNGG	3 cut(s)	116, 755, 866
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	4 cut(s)	246, 261, 306, 937
BseNI	ACTGG	2 cut(s)	110, 724
BseRI	GAGGAG	2 cut(s)	488, 591
BseXI	GCAGC	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	440
BshFI	GGCC	5 cut(s)	109, 437, 443, 698, 893
BshVI	ATCGAT	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	806
BsiSI	CCGG	1 cut(s)	399
BslFI	GGGAC	1 cut(s)	882
BslI	CCNNNNNNNGG	3 cut(s)	116, 755, 866
BsmAI	GTCTC	3 cut(s)	555, 636, 750
BsmFI	GGGAC	1 cut(s)	882
BsmI	GAATGC	1 cut(s)	692
BsnI	GGCC	5 cut(s)	109, 437, 443, 698, 893
Bsp1286I	GDGCHC	3 cut(s)	405, 432, 806
Bsp143I	GATC	5 cut(s)	114, 340, 537, 546, 621
BspACI	CCGC	7 cut(s)	23, 438, 440, 495, 719, 890, 927
BspANI	GGCC	5 cut(s)	109, 437, 443, 698, 893
BspCNI	CTCAG	4 cut(s)	247, 262, 307, 936
BspDI	ATCGAT	1 cut(s)	32
BspFNI	CGCG	1 cut(s)	440
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	2 cut(s)	133, 858
BspOI	GCTAGC	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	444
BsrI	ACTGG	2 cut(s)	110, 724
BssECI	CCNNGG	4 cut(s)	104, 127, 432, 438
BssMI	GATC	5 cut(s)	114, 340, 537, 546, 621
BssNAI	GTATAC	1 cut(s)	955
BssT1I	CCWWGG	2 cut(s)	104, 432
Bst1107I	GTATAC	1 cut(s)	955
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	1 cut(s)	362
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstC8I	GCNNGC	3 cut(s)	322, 372, 388
BstDEI	CTNAG	6 cut(s)	255, 270, 297, 315, 378, 923
BstDSI	CCRYGG	1 cut(s)	438
BstF5I	GGATG	2 cut(s)	78, 388
BstFNI	CGCG	1 cut(s)	440
BstKTI	GATC	5 cut(s)	117, 343, 540, 549, 624
BstMAI	GTCTC	3 cut(s)	555, 636, 750
BstMBI	GATC	5 cut(s)	114, 340, 537, 546, 621
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 446, 704, 899
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	2 cut(s)	365, 398
BstUI	CGCG	1 cut(s)	440
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	20
BstZ17I	GTATAC	1 cut(s)	955
Bsu15I	ATCGAT	1 cut(s)	32
Bsu36I	CCTNAGG	2 cut(s)	255, 270
BsuRI	GGCC	5 cut(s)	109, 437, 443, 698, 893
BsuTUI	ATCGAT	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	438
BtsCI	GGATG	2 cut(s)	78, 388
BtsIMutI	CAGTG	2 cut(s)	117, 286
Cac8I	GCNNGC	3 cut(s)	322, 372, 388
CciI	TCATGA	1 cut(s)	778
Cfr13I	GGNCC	1 cut(s)	696
Cfr42I	CCGCGG	1 cut(s)	441
ClaI	ATCGAT	1 cut(s)	32
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	2 cut(s)	501, 634
CviAII	CATG	4 cut(s)	144, 779, 911, 950
CviQI	GTAC	2 cut(s)	501, 634
DdeI	CTNAG	6 cut(s)	255, 270, 297, 315, 378, 923
DpnI	GATC	5 cut(s)	116, 342, 539, 548, 623
DpnII	GATC	5 cut(s)	114, 340, 537, 546, 621
EaeI	YGGCCR	2 cut(s)	107, 441
Eco130I	CCWWGG	2 cut(s)	104, 432
Eco24I	GRGCYC	2 cut(s)	405, 432
Eco81I	CCTNAGG	2 cut(s)	255, 270
EcoRII	CCWGG	1 cut(s)	365
EcoT14I	CCWWGG	2 cut(s)	104, 432
EcoT38I	GRGCYC	2 cut(s)	405, 432
ErhI	CCWWGG	2 cut(s)	104, 432
FaeI	CATG	4 cut(s)	147, 782, 914, 953
FalI	AAGNNNNNCTT	2 cut(s)	692, 724
FaqI	GGGAC	1 cut(s)	882
FatI	CATG	4 cut(s)	143, 778, 910, 949
FauI	CCCGC	1 cut(s)	726
FbaI	TGATCA	1 cut(s)	621
FblI	GTMKAC	1 cut(s)	954
Fnu4HI	GCNGC	4 cut(s)	84, 438, 441, 891
FokI	GGATG	2 cut(s)	85, 395
FriOI	GRGCYC	2 cut(s)	405, 432
Fsp4HI	GCNGC	4 cut(s)	84, 438, 441, 891
FspBI	CTAG	2 cut(s)	321, 555
GluI	GCNGC	4 cut(s)	84, 438, 441, 891
HaeIII	GGCC	5 cut(s)	109, 437, 443, 698, 893
HapII	CCGG	1 cut(s)	399
HgaI	GACGC	1 cut(s)	357
Hin1II	CATG	4 cut(s)	147, 782, 914, 953
HindIII	AAGCTT	1 cut(s)	674
HinfI	GANTC	3 cut(s)	120, 743, 918
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	4 cut(s)	19, 253, 556, 832
Hpy166II	GTNNAC	2 cut(s)	214, 955
Hpy188I	TCNGA	4 cut(s)	58, 119, 131, 816
Hpy188III	TCNNGA	6 cut(s)	458, 520, 625, 670, 779, 878
Hpy8I	GTNNAC	2 cut(s)	214, 955
HpyAV	CCTTC	4 cut(s)	298, 811, 847, 859
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4V	TGCA	2 cut(s)	86, 386
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 446, 704, 899
HpyF3I	CTNAG	6 cut(s)	255, 270, 297, 315, 378, 923
Hsp92II	CATG	4 cut(s)	147, 782, 914, 953
Ksp22I	TGATCA	1 cut(s)	621
KspI	CCGCGG	1 cut(s)	441
Kzo9I	GATC	5 cut(s)	114, 340, 537, 546, 621
LmnI	GCTCC	1 cut(s)	801
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	2 cut(s)	373, 525
MaeI	CTAG	2 cut(s)	321, 555
MalI	GATC	5 cut(s)	116, 342, 539, 548, 623
MboI	GATC	5 cut(s)	114, 340, 537, 546, 621
MboII	GAAGA	6 cut(s)	22, 25, 347, 350, 490, 775
MhlI	GDGCHC	3 cut(s)	405, 432, 806
MlsI	TGGCCA	1 cut(s)	109
MluCI	AATT	6 cut(s)	158, 393, 420, 568, 810, 906
MluNI	TGGCCA	1 cut(s)	109
MlyI	GAGTC	2 cut(s)	752, 927
MmeI	TCCRAC	1 cut(s)	775
Mox20I	TGGCCA	1 cut(s)	109
MscI	TGGCCA	1 cut(s)	109
MseI	TTAA	7 cut(s)	162, 189, 423, 615, 846, 873, 977
Msp20I	TGGCCA	1 cut(s)	109
MspA1I	CMGCKG	3 cut(s)	314, 440, 927
MspI	CCGG	1 cut(s)	399
MspR9I	CCNGG	2 cut(s)	367, 400
Mva1269I	GAATGC	1 cut(s)	692
MvaI	CCWGG	1 cut(s)	367
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	4 cut(s)	83, 446, 704, 899
NciI	CCSGG	1 cut(s)	400
NdeII	GATC	5 cut(s)	114, 340, 537, 546, 621
NheI	GCTAGC	1 cut(s)	320
NlaIII	CATG	4 cut(s)	147, 782, 914, 953
NlaIV	GGNNCC	2 cut(s)	133, 858
PagI	TCATGA	1 cut(s)	778
PctI	GAATGC	1 cut(s)	692
PfeI	GAWTC	1 cut(s)	120
PkrI	GCNGC	4 cut(s)	85, 439, 442, 892
PleI	GAGTC	2 cut(s)	751, 926
PpsI	GAGTC	2 cut(s)	751, 926
PshBI	ATTAAT	1 cut(s)	423
PsiI	TTATAA	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	2 cut(s)	133, 858
PspPI	GGNCC	1 cut(s)	696
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	2 cut(s)	502, 635
RsaNI	GTAC	2 cut(s)	501, 634
SacII	CCGCGG	1 cut(s)	441
SaqAI	TTAA	7 cut(s)	162, 189, 423, 615, 846, 873, 977
SatI	GCNGC	4 cut(s)	84, 438, 441, 891
Sau3AI	GATC	5 cut(s)	114, 340, 537, 546, 621
Sau96I	GGNCC	1 cut(s)	696
SchI	GAGTC	2 cut(s)	752, 927
ScrFI	CCNGG	2 cut(s)	367, 400
SduI	GDGCHC	3 cut(s)	405, 432, 806
SfaNI	GCATC	2 cut(s)	373, 525
Sfr303I	CCGCGG	1 cut(s)	441
SgrBI	CCGCGG	1 cut(s)	441
SpeI	ACTAGT	1 cut(s)	554
Sse9I	AATT	6 cut(s)	158, 393, 420, 568, 810, 906
SsiI	CCGC	7 cut(s)	23, 438, 440, 495, 719, 890, 927
SspMI	CTAG	2 cut(s)	321, 555
StyD4I	CCNGG	2 cut(s)	365, 398
StyI	CCWWGG	2 cut(s)	104, 432
TaaI	ACNGT	1 cut(s)	362
TaqI	TCGA	3 cut(s)	32, 540, 753
TasI	AATT	6 cut(s)	158, 393, 420, 568, 810, 906
TatI	WGTACW	1 cut(s)	633
TauI	GCSGC	3 cut(s)	440, 443, 893
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	7 cut(s)	162, 189, 423, 615, 846, 873, 977
Tru9I	TTAA	7 cut(s)	162, 189, 423, 615, 846, 873, 977
TscAI	CASTG	2 cut(s)	117, 286
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	6 cut(s)	84, 132, 317, 767, 878, 899
TspRI	CASTG	2 cut(s)	117, 286
VspI	ATTAAT	1 cut(s)	423
XapI	RAATTY	2 cut(s)	158, 810
XmiI	GTMKAC	1 cut(s)	954
XspI	CTAG	2 cut(s)	321, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.