Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004277

Physical Location & Seq

Genomic Coordinates Forward (+)

24603173 .. 24606215

Gene Structure 3043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00102460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCGTTGAAGATGGCGATTCTGATTTTCTTTATCTTGGTCACAGGAGCTTCGTCTGGAATGGCATTCACCGGTGGAATCAATGCTGCAATGTTCATGAAGATGCAGGAAACAGCTGAGGGGCAGGCTGCTCAGGATGCAAGCACCATTGCTGAGCATATTGAAGAAAAGGATATACTGGTTTATAATCTTGGAGGGGGTGCATTAGATGTGAGTATCGTGCACATTGATAAAGGTCTTTTTGAAGTAATGGCGACAAGTGGAGACATTCACTTGGGAGGTAGGATCTTTGACGACAGACTGGTTGACTTTTTCATCACATTGATCAAGAGGAAGTACTACCATGATATCCGCAAAAATAACAAGGCTGTTGCCAAGCTTCGCAAGGATTGTGAGAGAGCAAAGGGAGCCTTGAGTAGACAGCACCAAACCCATGTGGAGGTTGAGTCTCTAGTTGATGGTATTGATTATTTCTCGGAGCCATTGACCAGGGCTAAGTTTGAGGAGTTGAACATGGAGTTGTTTAACAAGACCATCGGGACTGTGACAAATTGTTTAGAAGATGCAGGCCTGAAAAAAACAGATATTGACGAGATTGTGCTTGTTGGAGGGAGTACTCGAATTCCTAAGGTGCAGCAGTTGTTGAAGGACTTCTTCAATGGGAAAGAACCAAACAAGGGTGTTAATCCTGATGAGGCCATTGCCTTCGGTGCTGCAGTTCTGGGTGGAGCCTTTAGTGGAGACAGCTGGAATGAAACCAAAGGCCTTATTGTGCGTGATATTGTTCCTTTCACTCTCGGTATGGACATAGGTGACAGGGTGCATGAATGTATACCAAGGAACACTGTTATCCCAAATAAGATGTCAACGAAACTTTTCCTCAGAACTAAAGAAAATACAGCCCCCATTGTGGCCTATGAATGTGAAGGAAGACTATTGCCAAATGAATGTTCTGAGATTAAAAGAATTCCTGTAAGATTCGACAAAGCGACCCGAATTGAAGTGTTTTTTGATATCGATGCAAATGGGATTCTACATGTGACCATTGAAGAGGATGTCAAAGCAAAGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

357

Amino Acids

39.47

Weight (kDa)

5.61

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	51 - 354	1.4e-88	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09080 AT1G09080
fragaria_vesca	FvH4_6g06470
malus_domestica	MD12G1215200.v1.1
prunus_persica	Prupe.6G321700_v2.0.a1
pyrus_communis	pycom04g17760 pycom12g20120
rosa_chinensis	RchiOBHm_Chr2g0142601 RchiOBHm_Chr3g0455591 RchiOBHm_Chr3g0455611 RchiOBHm_Chr3g0455631
rosa_laevigata	RLG00000019973 RLG00000019974 RLG00000025345 RLG00000025351
rosa_multiflora	Rmu_co8491437.1_g000001 Rmu_sc0000223.1_g000003 Rmu_sc0005164.1_g000002 Rmu_sc0015502.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102460
rosa_rugosa	Rorug03G0008500 Rorug03G0008700
rosa_samantha	Rh2AG426400 Rh2BG436000 Rh2CG412900 Rh2DG445800 Rh3AG067800 Rh3AG068000 Rh3DG070300
rosa_wichuraiana	Rw2G034940 Rw3G005440 Rw3G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	186
AccI	GTMKAC	2 cut(s)	418, 832
AciI	CCGC	1 cut(s)	352
AclWI	GGATC	1 cut(s)	293
AcsI	RAATTY	2 cut(s)	621, 966
AfaI	GTAC	2 cut(s)	338, 616
AfiI	CCNNNNNNNGG	3 cut(s)	439, 677, 910
AflIII	ACRYGT	1 cut(s)	1036
AgeI	ACCGGT	1 cut(s)	71
AgsI	TTSAA	8 cut(s)	10, 164, 245, 511, 646, 658, 1001, 1049
AjnI	CCWGG	1 cut(s)	488
AjuI	GAANNNNNNNTTGG	2 cut(s)	934, 966
AluBI	AGCT	4 cut(s)	50, 116, 379, 747
AluI	AGCT	4 cut(s)	50, 116, 379, 747
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	3 cut(s)	258, 453, 735
Alw44I	GTGCAC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	293
AoxI	GGCC	4 cut(s)	568, 696, 763, 912
ApaLI	GTGCAC	1 cut(s)	221
ApeKI	GCWGC	4 cut(s)	86, 128, 634, 713
ApoI	RAATTY	2 cut(s)	621, 966
ArsI	GACNNNNNNTTYG	2 cut(s)	848, 880
AsiGI	ACCGGT	1 cut(s)	71
Asp700I	GAANNNNTTC	2 cut(s)	650, 875
AsuHPI	GGTGA	2 cut(s)	61, 824
AxyI	CCTNAGG	1 cut(s)	627
BaeGI	GKGCMC	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	937
Bbv12I	GWGCWC	1 cut(s)	225
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	4 cut(s)	73, 115, 646, 700
BccI	CCATC	3 cut(s)	7, 452, 542
BciT130I	CCWGG	1 cut(s)	490
BclI	TGATCA	1 cut(s)	324
BcoDI	GTCTC	3 cut(s)	258, 453, 735
BfaI	CTAG	1 cut(s)	452
BfmI	CTRYAG	1 cut(s)	714
BisI	GCNGC	4 cut(s)	87, 129, 635, 714
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	4 cut(s)	88, 130, 636, 715
BmcAI	AGTACT	2 cut(s)	338, 616
Bme1390I	CCNGG	1 cut(s)	490
BmiI	GGNNCC	3 cut(s)	409, 480, 730
BmrFI	CCNGG	1 cut(s)	490
BmsI	GCATC	4 cut(s)	93, 127, 553, 1009
BpiI	GAAGAC	1 cut(s)	937
Bpu10I	CCTNAGC	2 cut(s)	117, 132
Bpu1102I	GCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	433
Bsa29I	ATCGAT	1 cut(s)	1017
BsaJI	CCNNGG	2 cut(s)	489, 836
BsaWI	WCCGGW	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bsc4I	CCNNNNNNNGG	3 cut(s)	439, 677, 910
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	2 cut(s)	183, 306
Bse21I	CCTNAGG	1 cut(s)	627
Bse3DI	GCAATG	3 cut(s)	96, 147, 699
BseBI	CCWGG	1 cut(s)	490
BseCI	ATCGAT	1 cut(s)	1017
BseDI	CCNNGG	2 cut(s)	489, 836
BseGI	GGATG	2 cut(s)	142, 1060
BseLI	CCNNNNNNNGG	3 cut(s)	439, 677, 910
BseMI	GCAATG	3 cut(s)	96, 147, 699
BseMII	CTCAG	5 cut(s)	108, 144, 146, 895, 945
BseNI	ACTGG	2 cut(s)	183, 306
BseRI	GAGGAG	1 cut(s)	518
BseSI	GKGCMC	1 cut(s)	225
BseXI	GCAGC	4 cut(s)	73, 115, 646, 700
BsgI	GTGCAG	1 cut(s)	653
BshFI	GGCC	4 cut(s)	570, 698, 765, 914
BshTI	ACCGGT	1 cut(s)	71
BshVI	ATCGAT	1 cut(s)	1017
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	553
BslI	CCNNNNNNNGG	3 cut(s)	439, 677, 910
BsmAI	GTCTC	3 cut(s)	258, 453, 735
BsmFI	GGGAC	1 cut(s)	553
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	4 cut(s)	570, 698, 765, 914
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	285, 324
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	1 cut(s)	352
BspANI	GGCC	4 cut(s)	570, 698, 765, 914
BspCNI	CTCAG	5 cut(s)	109, 145, 145, 894, 946
BspDI	ATCGAT	1 cut(s)	1017
BspHI	TCATGA	1 cut(s)	96
BspLI	GGNNCC	3 cut(s)	409, 480, 730
BspMAI	CTGCAG	1 cut(s)	718
BspPI	GGATC	1 cut(s)	293
BsrDI	GCAATG	3 cut(s)	96, 147, 699
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	2 cut(s)	183, 306
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	2 cut(s)	489, 836
BssMI	GATC	2 cut(s)	285, 324
BssNAI	GTATAC	1 cut(s)	833
BssT1I	CCWWGG	1 cut(s)	836
Bst1107I	GTATAC	1 cut(s)	833
Bst2UI	CCWGG	1 cut(s)	490
Bst4CI	ACNGT	2 cut(s)	544, 847
Bst6I	CTCTTC	1 cut(s)	1044
BstC8I	GCNNGC	3 cut(s)	126, 142, 568
BstDEI	CTNAG	7 cut(s)	117, 132, 153, 495, 627, 881, 954
BstF5I	GGATG	2 cut(s)	142, 1060
BstKTI	GATC	2 cut(s)	288, 327
BstMAI	GTCTC	3 cut(s)	258, 453, 735
BstMBI	GATC	2 cut(s)	285, 324
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 407, 710
BstNI	CCWGG	1 cut(s)	490
BstNSI	RCATGY	1 cut(s)	1040
BstSCI	CCNGG	1 cut(s)	488
BstSFI	CTRYAG	1 cut(s)	714
BstSLI	GKGCMC	1 cut(s)	225
BstV1I	GCAGC	4 cut(s)	73, 115, 646, 700
BstV2I	GAAGAC	1 cut(s)	937
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
BstZ17I	GTATAC	1 cut(s)	833
Bsu15I	ATCGAT	1 cut(s)	1017
Bsu36I	CCTNAGG	1 cut(s)	627
BsuRI	GGCC	4 cut(s)	570, 698, 765, 914
BsuTUI	ATCGAT	1 cut(s)	1017
BtsCI	GGATG	2 cut(s)	142, 1060
BtsIMutI	CAGTG	1 cut(s)	843
Cac8I	GCNNGC	3 cut(s)	126, 142, 568
CciI	TCATGA	1 cut(s)	96
Cfr10I	RCCGGY	1 cut(s)	71
ClaI	ATCGAT	1 cut(s)	1017
Csp6I	GTAC	2 cut(s)	337, 615
CspAI	ACCGGT	1 cut(s)	71
CviAII	CATG	6 cut(s)	97, 344, 434, 514, 824, 1037
CviQI	GTAC	2 cut(s)	337, 615
DdeI	CTNAG	7 cut(s)	117, 132, 153, 495, 627, 881, 954
DpnI	GATC	2 cut(s)	287, 326
DpnII	GATC	2 cut(s)	285, 324
Eam1104I	CTCTTC	1 cut(s)	1044
EarI	CTCTTC	1 cut(s)	1044
Eco130I	CCWWGG	1 cut(s)	836
Eco147I	AGGCCT	2 cut(s)	570, 765
Eco32I	GATATC	2 cut(s)	349, 1015
Eco81I	CCTNAGG	1 cut(s)	627
EcoRI	GAATTC	2 cut(s)	621, 966
EcoRII	CCWGG	1 cut(s)	488
EcoRV	GATATC	2 cut(s)	349, 1015
EcoT14I	CCWWGG	1 cut(s)	836
ErhI	CCWWGG	1 cut(s)	836
FaeI	CATG	6 cut(s)	100, 347, 437, 517, 827, 1040
FalI	AAGNNNNNCTT	4 cut(s)	395, 427, 638, 670
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	6 cut(s)	96, 343, 433, 513, 823, 1036
FbaI	TGATCA	1 cut(s)	324
FblI	GTMKAC	2 cut(s)	418, 832
Fnu4HI	GCNGC	4 cut(s)	87, 129, 635, 714
FokI	GGATG	2 cut(s)	149, 1067
Fsp4HI	GCNGC	4 cut(s)	87, 129, 635, 714
FspBI	CTAG	1 cut(s)	452
GluI	GCNGC	4 cut(s)	87, 129, 635, 714
HaeIII	GGCC	4 cut(s)	570, 698, 765, 914
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	6 cut(s)	100, 347, 437, 517, 827, 1040
HincII	GTYRAC	2 cut(s)	307, 867
HindII	GTYRAC	2 cut(s)	307, 867
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	5 cut(s)	19, 78, 446, 978, 1030
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	2 cut(s)	61, 824
Hpy166II	GTNNAC	5 cut(s)	223, 307, 419, 833, 867
Hpy188I	TCNGA	4 cut(s)	24, 478, 884, 955
Hpy188III	TCNNGA	6 cut(s)	57, 97, 134, 328, 538, 689
Hpy8I	GTNNAC	5 cut(s)	223, 307, 419, 833, 867
HpyAV	CCTTC	3 cut(s)	640, 715, 920
HpyCH4III	ACNGT	2 cut(s)	544, 847
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 407, 710
HpyF3I	CTNAG	7 cut(s)	117, 132, 153, 495, 627, 881, 954
Hsp92II	CATG	6 cut(s)	100, 347, 437, 517, 827, 1040
Ksp22I	TGATCA	1 cut(s)	324
Kzo9I	GATC	2 cut(s)	285, 324
LmnI	GCTCC	4 cut(s)	47, 407, 478, 728
Lsp1109I	GCAGC	4 cut(s)	73, 115, 646, 700
LweI	GCATC	4 cut(s)	93, 127, 553, 1009
MaeI	CTAG	1 cut(s)	452
MaeIII	GTNAC	4 cut(s)	40, 544, 812, 1039
MalI	GATC	2 cut(s)	287, 326
MboI	GATC	2 cut(s)	285, 324
MboII	GAAGA	7 cut(s)	22, 112, 176, 572, 646, 942, 1061
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	4 cut(s)	550, 621, 966, 996
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	1 cut(s)	586
MroXI	GAANNNNTTC	2 cut(s)	650, 875
MseI	TTAA	3 cut(s)	525, 684, 960
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	2 cut(s)	116, 747
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	490
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	490
MwoI	GCNNNNNNNGC	3 cut(s)	137, 407, 710
NdeII	GATC	2 cut(s)	285, 324
NlaIII	CATG	6 cut(s)	100, 347, 437, 517, 827, 1040
NlaIV	GGNNCC	3 cut(s)	409, 480, 730
NmuCI	GTSAC	4 cut(s)	40, 544, 812, 1039
NspI	RCATGY	1 cut(s)	1040
PagI	TCATGA	1 cut(s)	96
PceI	AGGCCT	2 cut(s)	570, 765
PciI	ACATGT	1 cut(s)	1036
PctI	GAATGC	1 cut(s)	65
PdmI	GAANNNNTTC	2 cut(s)	650, 875
PfeI	GAWTC	4 cut(s)	19, 78, 978, 1030
PinAI	ACCGGT	1 cut(s)	71
PkrI	GCNGC	4 cut(s)	88, 130, 636, 715
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PscI	ACATGT	1 cut(s)	1036
PsiI	TTATAA	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	488
PspN4I	GGNNCC	3 cut(s)	409, 480, 730
PstI	CTGCAG	1 cut(s)	718
PsuI	RGATCY	1 cut(s)	285
PvuII	CAGCTG	2 cut(s)	116, 747
RsaI	GTAC	2 cut(s)	338, 616
RsaNI	GTAC	2 cut(s)	337, 615
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	3 cut(s)	525, 684, 960
SatI	GCNGC	4 cut(s)	87, 129, 635, 714
Sau3AI	GATC	2 cut(s)	285, 324
ScaI	AGTACT	2 cut(s)	338, 616
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	1 cut(s)	490
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	9 cut(s)	52, 118, 238, 283, 381, 444, 633, 749, 814
SfaNI	GCATC	4 cut(s)	93, 127, 553, 1009
SfcI	CTRYAG	1 cut(s)	714
SgrAI	CRCCGGYG	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	412
SmoI	CTYRAG	1 cut(s)	412
Sse9I	AATT	4 cut(s)	550, 621, 966, 996
SseBI	AGGCCT	2 cut(s)	570, 765
SsiI	CCGC	1 cut(s)	352
SspMI	CTAG	1 cut(s)	452
StuI	AGGCCT	2 cut(s)	570, 765
StyD4I	CCNGG	1 cut(s)	488
StyI	CCWWGG	1 cut(s)	836
TaaI	ACNGT	2 cut(s)	544, 847
TaqI	TCGA	3 cut(s)	619, 981, 1017
TasI	AATT	4 cut(s)	550, 621, 966, 996
TatI	WGTACW	2 cut(s)	336, 614
TfiI	GAWTC	4 cut(s)	19, 78, 978, 1030
Tru1I	TTAA	3 cut(s)	525, 684, 960
Tru9I	TTAA	3 cut(s)	525, 684, 960
TscAI	CASTG	1 cut(s)	850
TseFI	GTSAC	4 cut(s)	40, 544, 812, 1039
TseI	GCWGC	4 cut(s)	86, 128, 634, 713
Tsp45I	GTSAC	4 cut(s)	40, 544, 812, 1039
TspDTI	ATGAA	7 cut(s)	85, 113, 304, 768, 840, 933, 960
TspRI	CASTG	1 cut(s)	850
VneI	GTGCAC	1 cut(s)	221
XapI	RAATTY	2 cut(s)	621, 966
XceI	RCATGY	1 cut(s)	1040
XmiI	GTMKAC	2 cut(s)	418, 832
XmnI	GAANNNNTTC	2 cut(s)	650, 875
XspI	CTAG	1 cut(s)	452
ZrmI	AGTACT	2 cut(s)	338, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.