Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004277

Physical Location & Seq

Genomic Coordinates Reverse (-)

61794171 .. 61796836

Gene Structure 2666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG436000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCGTTGAAGATGGCGATTCTGCTTTTCTTTATCTTGGTCACAGGAGCTTCGTCTGGAATGGCATTCACCGGTGGAAACAATGCTGCAATGTTCATGAAGATGCAGGAAACAGCTGAGGCCTATGAATGTGAAGGAAGACTATTGCCAAATGAATGTTCTGAGATTAAAAGAATTCCTGTAAGATTCGACAAAGCGACCCGAATTGAAGTGTTTTTTGATATCGATGCAAATGGGATTCTACATGTGACCATTGAAGAGGATGTCAAAGCAAGGGATAAAGTACTTGCCAGGCTCAGTCCTGAGGATGTGGCAGACGTGGCTAATACAATAAAAGGTATTATGTATCCTTCCAATCTGGACAAGCGGAGGAAGCTTCATAGCACAATAGAGAAGGCTCGCGCATTGTTGGAAACTAAATTTGATACGGTAGAGCAGGAAGATTTCGAAGAAATGGAGGAGAAGCTTAGAGAACTAGTAAAAATAGAGATCACACATTTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

168

Amino Acids

19.1

Weight (kDa)

5.12

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09080 AT1G09080
fragaria_vesca	FvH4_6g06470
malus_domestica	MD12G1215200.v1.1
prunus_persica	Prupe.6G321700_v2.0.a1
pyrus_communis	pycom04g17760 pycom12g20120
rosa_chinensis	RchiOBHm_Chr2g0142601 RchiOBHm_Chr3g0455591 RchiOBHm_Chr3g0455611 RchiOBHm_Chr3g0455631
rosa_laevigata	RLG00000019973 RLG00000019974 RLG00000025345 RLG00000025351
rosa_multiflora	Rmu_co8491437.1_g000001 Rmu_sc0000223.1_g000003 Rmu_sc0005164.1_g000002 Rmu_sc0015502.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102460
rosa_rugosa	Rorug03G0008500 Rorug03G0008700
rosa_samantha	Rh2AG426400 Rh2BG436000 Rh2CG412900 Rh2DG445800 Rh3AG067800 Rh3AG068000 Rh3DG070300
rosa_wichuraiana	Rw2G034940 Rw3G005440 Rw3G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	402
AciI	CCGC	1 cut(s)	367
AcsI	RAATTY	2 cut(s)	174, 419
AfaI	GTAC	1 cut(s)	285
AflIII	ACRYGT	1 cut(s)	244
AgeI	ACCGGT	1 cut(s)	71
AgsI	TTSAA	3 cut(s)	10, 209, 257
AhlI	ACTAGT	1 cut(s)	475
AjiI	CACGTC	1 cut(s)	319
AjnI	CCWGG	1 cut(s)	290
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AluBI	AGCT	4 cut(s)	50, 116, 376, 466
AluI	AGCT	4 cut(s)	50, 116, 376, 466
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	2 cut(s)	174, 419
AsiGI	ACCGGT	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	404
AsuHPI	GGTGA	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	447
AxyI	CCTNAGG	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	145
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	7
BciT130I	CCWGG	1 cut(s)	292
BciVI	GTATCC	1 cut(s)	357
BcuI	ACTAGT	1 cut(s)	475
BfaI	CTAG	1 cut(s)	476
BfuI	GTATCC	1 cut(s)	357
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
BmcAI	AGTACT	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	292
BmgBI	CACGTC	1 cut(s)	319
BmrFI	CCNGG	1 cut(s)	292
BmsI	GCATC	2 cut(s)	93, 217
BpiI	GAAGAC	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	447
Bsa29I	ATCGAT	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	71
Bse118I	RCCGGY	1 cut(s)	71
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	292
BseCI	ATCGAT	1 cut(s)	225
BseGI	GGATG	2 cut(s)	268, 313
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	4 cut(s)	108, 153, 294, 310
BseRI	GAGGAG	1 cut(s)	473
BseXI	GCAGC	1 cut(s)	73
Bsh1236I	CGCG	1 cut(s)	402
BshFI	GGCC	1 cut(s)	122
BshTI	ACCGGT	1 cut(s)	71
BshVI	ATCGAT	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	122
Bsp119I	TTCGAA	1 cut(s)	447
Bsp143I	GATC	1 cut(s)	489
BspACI	CCGC	1 cut(s)	367
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	4 cut(s)	109, 154, 295, 309
BspDI	ATCGAT	1 cut(s)	225
BspFNI	CGCG	1 cut(s)	402
BspHI	TCATGA	1 cut(s)	96
BspT104I	TTCGAA	1 cut(s)	447
BsrDI	GCAATG	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
BssMI	GATC	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	292
Bst4CI	ACNGT	1 cut(s)	430
Bst6I	CTCTTC	1 cut(s)	252
BstBI	TTCGAA	1 cut(s)	447
BstC8I	GCNNGC	1 cut(s)	400
BstDEI	CTNAG	5 cut(s)	117, 162, 296, 303, 467
BstF5I	GGATG	2 cut(s)	268, 313
BstFNI	CGCG	1 cut(s)	402
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	1 cut(s)	492
BstMBI	GATC	1 cut(s)	489
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 373
BstNI	CCWGG	1 cut(s)	292
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	290
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	145
Bsu15I	ATCGAT	1 cut(s)	225
Bsu36I	CCTNAGG	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	122
BsuTUI	ATCGAT	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	268, 313
Cac8I	GCNNGC	1 cut(s)	400
CciI	TCATGA	1 cut(s)	96
CfoI	GCGC	1 cut(s)	404
Cfr10I	RCCGGY	1 cut(s)	71
ClaI	ATCGAT	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	284
CspAI	ACCGGT	1 cut(s)	71
CviAII	CATG	2 cut(s)	97, 245
CviJI	RGCY	8 cut(s)	50, 116, 122, 295, 323, 376, 398, 466
CviKI_1	RGCY	8 cut(s)	50, 116, 122, 295, 323, 376, 398, 466
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	5 cut(s)	117, 162, 296, 303, 467
DpnI	GATC	1 cut(s)	491
DpnII	GATC	1 cut(s)	489
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco147I	AGGCCT	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	223
Eco81I	CCTNAGG	1 cut(s)	303
EcoRI	GAATTC	1 cut(s)	174
EcoRII	CCWGG	1 cut(s)	290
EcoRV	GATATC	1 cut(s)	223
FaeI	CATG	2 cut(s)	100, 248
FaiI	YATR	5 cut(s)	98, 126, 246, 344, 381
FatI	CATG	2 cut(s)	96, 244
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	2 cut(s)	275, 320
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	1 cut(s)	476
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	2 cut(s)	100, 248
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HindIII	AAGCTT	2 cut(s)	374, 464
HinfI	GANTC	3 cut(s)	19, 186, 238
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	163, 506
Hpy188III	TCNNGA	4 cut(s)	57, 97, 302, 359
HpyAV	CCTTC	3 cut(s)	128, 360, 388
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	3 cut(s)	89, 106, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 373
HpyF3I	CTNAG	5 cut(s)	117, 162, 296, 303, 467
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	100, 248
HspAI	GCGC	1 cut(s)	402
Kzo9I	GATC	1 cut(s)	489
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	2 cut(s)	93, 217
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	2 cut(s)	40, 247
MalI	GATC	1 cut(s)	491
MboI	GATC	1 cut(s)	489
MboII	GAAGA	6 cut(s)	22, 112, 150, 269, 452, 461
MluCI	AATT	3 cut(s)	174, 204, 419
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	5 cut(s)	112, 253, 298, 363, 451
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	292
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	292
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	2 cut(s)	320, 373
NdeII	GATC	1 cut(s)	489
NlaIII	CATG	2 cut(s)	100, 248
NmuCI	GTSAC	2 cut(s)	40, 247
NspI	RCATGY	1 cut(s)	248
NspV	TTCGAA	1 cut(s)	447
PagI	TCATGA	1 cut(s)	96
PceI	AGGCCT	1 cut(s)	122
PciI	ACATGT	1 cut(s)	244
PctI	GAATGC	1 cut(s)	65
PfeI	GAWTC	3 cut(s)	19, 186, 238
PinAI	ACCGGT	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	88
PscI	ACATGT	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	1 cut(s)	489
ScaI	AGTACT	1 cut(s)	285
ScrFI	CCNGG	1 cut(s)	292
SetI	ASST	6 cut(s)	52, 118, 321, 340, 378, 468
SfaNI	GCATC	2 cut(s)	93, 217
SfuI	TTCGAA	1 cut(s)	447
SgrAI	CRCCGGYG	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	101
SpeI	ACTAGT	1 cut(s)	475
Sse9I	AATT	3 cut(s)	174, 204, 419
SseBI	AGGCCT	1 cut(s)	122
SsiI	CCGC	1 cut(s)	367
SspMI	CTAG	1 cut(s)	476
StuI	AGGCCT	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	290
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	3 cut(s)	189, 225, 447
TasI	AATT	3 cut(s)	174, 204, 419
TatI	WGTACW	1 cut(s)	283
TfiI	GAWTC	3 cut(s)	19, 186, 238
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TseFI	GTSAC	2 cut(s)	40, 247
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	2 cut(s)	40, 247
TspDTI	ATGAA	5 cut(s)	85, 113, 141, 168, 368
XapI	RAATTY	2 cut(s)	174, 419
XceI	RCATGY	1 cut(s)	248
XspI	CTAG	1 cut(s)	476
ZrmI	AGTACT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.