Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004277

Physical Location & Seq

Genomic Coordinates Reverse (-)

57546459 .. 57549622

Gene Structure 3164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G034940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCGATTCTGCTTTTCTTTATCTTGGTCACAGGAGCTTCGTCTGGAATGGCATTCACCGGTGGAAACAATGCTGCAATGTTCATGAAGATGCAGGAAACAGCTGAGATTGAAGTGTTTTTTGATATCGATGCAAATGGGATTCTACATGTGACCATTGAAGAGGATGTCAAAGCAAGGGATAAGGTACTTGCCAGGCTCAGTCTTGAGGATGTGGCACACGTCGCTAATGCATTAAAAGTAGTGCTATCAGTGACTCAGCGATCATCTTCAATGGACCATATCCACTCAACATGGACTGAAATAGAACCACTATCGCCGGGCAAGACGCGGTCCCAACCACCGCAACAACTTAAGCCTCCAGCAAGAACCTCCGCTACTGCTTCAAAACCCAACACGCAGAGCCACCGGATCCCTTGGATAAAACAAAGTCGCCCCGAACGAGAGCGCCACCAGGTTCACACCCCAAAACGATCCCACCTCCAAGACGATCCAGCAATAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.66

Weight (kDa)

8.14

Isoelectric Point (pI)

63.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09080 AT1G09080
fragaria_vesca	FvH4_6g06470
malus_domestica	MD12G1215200.v1.1
prunus_persica	Prupe.6G321700_v2.0.a1
pyrus_communis	pycom04g17760 pycom12g20120
rosa_chinensis	RchiOBHm_Chr2g0142601 RchiOBHm_Chr3g0455591 RchiOBHm_Chr3g0455611 RchiOBHm_Chr3g0455631
rosa_laevigata	RLG00000019973 RLG00000019974 RLG00000025345 RLG00000025351
rosa_multiflora	Rmu_co8491437.1_g000001 Rmu_sc0000223.1_g000003 Rmu_sc0005164.1_g000002 Rmu_sc0015502.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102460
rosa_rugosa	Rorug03G0008500 Rorug03G0008700
rosa_samantha	Rh2AG426400 Rh2BG436000 Rh2CG412900 Rh2DG445800 Rh3AG067800 Rh3AG068000 Rh3DG070300
rosa_wichuraiana	Rw2G034940 Rw3G005440 Rw3G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	331
AciI	CCGC	3 cut(s)	331, 344, 375
AclWI	GGATC	4 cut(s)	406, 419, 468, 485
AfaI	GTAC	1 cut(s)	189
AflII	CTTAAG	1 cut(s)	353
AflIII	ACRYGT	2 cut(s)	148, 220
AgeI	ACCGGT	1 cut(s)	59
AgsI	TTSAA	4 cut(s)	113, 161, 273, 387
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	2 cut(s)	194, 453
AluBI	AGCT	3 cut(s)	38, 104, 504
AluI	AGCT	3 cut(s)	38, 104, 504
AlwI	GGATC	4 cut(s)	406, 419, 468, 485
ApeKI	GCWGC	1 cut(s)	74
AsiGI	ACCGGT	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	450
AspS9I	GGNCC	2 cut(s)	277, 333
AsuC2I	CCSGG	1 cut(s)	321
AsuHPI	GGTGA	1 cut(s)	49
AvaII	GGWCC	2 cut(s)	277, 333
BamHI	GGATCC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	61
BciT130I	CCWGG	2 cut(s)	196, 455
BcnI	CCSGG	1 cut(s)	321
BfoI	RGCGCY	1 cut(s)	451
BfrI	CTTAAG	1 cut(s)	353
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	3 cut(s)	196, 321, 455
Bme18I	GGWCC	2 cut(s)	277, 333
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	277, 333
BmiI	GGNNCC	2 cut(s)	335, 413
BmrFI	CCNGG	3 cut(s)	196, 321, 455
BmsI	GCATC	2 cut(s)	81, 121
BpmI	CTGGAG	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	321
Bsa29I	ATCGAT	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	416
BsaWI	WCCGGW	2 cut(s)	59, 408
Bse118I	RCCGGY	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	2 cut(s)	196, 455
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	416
BseGI	GGATG	2 cut(s)	172, 217
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	3 cut(s)	96, 214, 272
BseXI	GCAGC	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	331
BshTI	ACCGGT	1 cut(s)	59
BshVI	ATCGAT	1 cut(s)	129
BsiSI	CCGG	3 cut(s)	60, 320, 409
BslFI	GGGAC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	319
BsmI	GAATGC	1 cut(s)	53
Bsp143I	GATC	4 cut(s)	263, 411, 473, 490
BspACI	CCGC	3 cut(s)	331, 344, 375
BspCNI	CTCAG	3 cut(s)	97, 213, 271
BspDI	ATCGAT	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	331
BspHI	TCATGA	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	335, 413
BspPI	GGATC	4 cut(s)	406, 419, 468, 485
BspTI	CTTAAG	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	84
BsrFI	RCCGGY	1 cut(s)	59
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	416
BssMI	GATC	4 cut(s)	263, 411, 473, 490
BssT1I	CCWWGG	1 cut(s)	416
Bst2UI	CCWGG	2 cut(s)	196, 455
Bst6I	CTCTTC	1 cut(s)	156
BstAFI	CTTAAG	1 cut(s)	353
BstDEI	CTNAG	3 cut(s)	105, 200, 258
BstF5I	GGATG	2 cut(s)	172, 217
BstFNI	CGCG	1 cut(s)	331
BstH2I	RGCGCY	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	450
BstKTI	GATC	4 cut(s)	266, 414, 476, 493
BstMBI	GATC	4 cut(s)	263, 411, 473, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	2 cut(s)	196, 455
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	3 cut(s)	194, 319, 453
BstUI	CGCG	1 cut(s)	331
BstV1I	GCAGC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	411
BstYI	RGATCY	1 cut(s)	411
Bsu15I	ATCGAT	1 cut(s)	129
BsuTUI	ATCGAT	1 cut(s)	129
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	172, 217
BtsIMutI	CAGTG	1 cut(s)	258
CciI	TCATGA	1 cut(s)	84
CfoI	GCGC	1 cut(s)	450
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	2 cut(s)	277, 333
ClaI	ATCGAT	1 cut(s)	129
CseI	GACGC	1 cut(s)	337
CsiI	ACCWGGT	1 cut(s)	453
Csp6I	GTAC	1 cut(s)	188
CspAI	ACCGGT	1 cut(s)	59
CviAII	CATG	3 cut(s)	85, 149, 294
CviJI	RGCY	6 cut(s)	38, 104, 199, 358, 405, 504
CviKI_1	RGCY	6 cut(s)	38, 104, 199, 358, 405, 504
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	3 cut(s)	105, 200, 258
DpnI	GATC	4 cut(s)	265, 413, 475, 492
DpnII	GATC	4 cut(s)	263, 411, 473, 490
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	416
Eco32I	GATATC	1 cut(s)	127
Eco47I	GGWCC	2 cut(s)	277, 333
EcoRII	CCWGG	2 cut(s)	194, 453
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	416
EcoT22I	ATGCAT	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	416
FaeI	CATG	3 cut(s)	88, 152, 297
FaiI	YATR	4 cut(s)	86, 150, 282, 295
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	3 cut(s)	84, 148, 293
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	2 cut(s)	179, 224
Fsp4HI	GCNGC	1 cut(s)	75
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	451
HapII	CCGG	3 cut(s)	60, 320, 409
HgaI	GACGC	1 cut(s)	337
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	3 cut(s)	88, 152, 297
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HinfI	GANTC	3 cut(s)	7, 142, 256
HpaII	CCGG	3 cut(s)	60, 320, 409
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188III	TCNNGA	3 cut(s)	45, 85, 206
Hpy8I	GTNNAC	1 cut(s)	460
Hpy99I	CGWCG	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	4 cut(s)	77, 94, 134, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	3 cut(s)	105, 200, 258
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	88, 152, 297
HspAI	GCGC	1 cut(s)	448
Kzo9I	GATC	4 cut(s)	263, 411, 473, 490
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	2 cut(s)	81, 121
MabI	ACCWGGT	1 cut(s)	453
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	3 cut(s)	28, 151, 253
MalI	GATC	4 cut(s)	265, 413, 475, 492
MboI	GATC	4 cut(s)	263, 411, 473, 490
MboII	GAAGA	3 cut(s)	100, 173, 261
MflI	RGATCY	1 cut(s)	411
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	5 cut(s)	157, 202, 369, 382, 491
Mph1103I	ATGCAT	1 cut(s)	235
MseI	TTAA	2 cut(s)	236, 354
MslI	CAYNNNNRTG	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	104
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	3 cut(s)	60, 320, 409
MspR9I	CCNGG	3 cut(s)	196, 321, 455
Mva1269I	GAATGC	1 cut(s)	53
MvaI	CCWGG	2 cut(s)	196, 455
MvnI	CGCG	1 cut(s)	331
MwoI	GCNNNNNNNGC	1 cut(s)	224
NciI	CCSGG	1 cut(s)	321
NdeII	GATC	4 cut(s)	263, 411, 473, 490
NlaIII	CATG	3 cut(s)	88, 152, 297
NlaIV	GGNNCC	2 cut(s)	335, 413
NmuCI	GTSAC	3 cut(s)	28, 151, 253
NsiI	ATGCAT	1 cut(s)	235
NspI	RCATGY	1 cut(s)	152
PagI	TCATGA	1 cut(s)	84
PciI	ACATGT	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	1 cut(s)	439
PctI	GAATGC	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	7, 142
PflFI	GACNNNGTC	1 cut(s)	331
PinAI	ACCGGT	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PscI	ACATGT	1 cut(s)	148
Psp6I	CCWGG	2 cut(s)	194, 453
PspGI	CCWGG	2 cut(s)	194, 453
PspN4I	GGNNCC	2 cut(s)	335, 413
PspPI	GGNCC	2 cut(s)	277, 333
PsrI	GAACNNNNNNTAC	2 cut(s)	361, 393
PsuI	RGATCY	1 cut(s)	411
PsyI	GACNNNGTC	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	236, 354
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	4 cut(s)	263, 411, 473, 490
Sau96I	GGNCC	2 cut(s)	277, 333
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	3 cut(s)	196, 321, 455
SetI	ASST	8 cut(s)	40, 106, 189, 225, 374, 459, 483, 506
SexAI	ACCWGGT	1 cut(s)	453
SfaNI	GCATC	2 cut(s)	81, 121
SgrAI	CRCCGGYG	1 cut(s)	59
SinI	GGWCC	2 cut(s)	277, 333
SmiMI	CAYNNNNRTG	1 cut(s)	89
SmlI	CTYRAG	2 cut(s)	206, 353
SmoI	CTYRAG	2 cut(s)	206, 353
SsiI	CCGC	3 cut(s)	331, 344, 375
StyD4I	CCNGG	3 cut(s)	194, 319, 453
StyI	CCWWGG	1 cut(s)	416
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	129
TfiI	GAWTC	2 cut(s)	7, 142
Tru1I	TTAA	2 cut(s)	236, 354
Tru9I	TTAA	2 cut(s)	236, 354
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	3 cut(s)	28, 151, 253
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	3 cut(s)	28, 151, 253
TspDTI	ATGAA	2 cut(s)	73, 101
TspRI	CASTG	1 cut(s)	258
Tth111I	GACNNNGTC	1 cut(s)	331
Vha464I	CTTAAG	1 cut(s)	353
VpaK11BI	GGWCC	2 cut(s)	277, 333
XceI	RCATGY	1 cut(s)	152
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.