Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000223.1

Orthogroup ID

OG0004277

Physical Location & Seq

Genomic Coordinates Reverse (-)

9991 .. 11709

Gene Structure 1719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000223.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

atggaggtgaagaagaccaaagcggtgtcatcgatatttctgctcgtctttgtttcagacttcttgtgtgggatggcattagctgcaaagggttcatctaatccttggccagtgatcggaatcagcctcggaaccacctattcatgtgtggaacgtaccctttttgatatccagcggctcatagggagagaatttaatgatatggaggttcaaagggagattaagttgttgccttataaggttgtgaacatagatgggaagccttatattcaggtgaagtttagaggtgaaaccaaggtgtttagccctgaggaaatcagtgctatgatattgactaagatgaaggaaacagctgaggctagcttatttggggaagaagatcaaagacgctctcataactgttccaggcaggctactaaggatgcaggcaaaattgccgggctcaatgtggttcaagtaattaatgagcccaaggccgcggccattgcctatggtcttgacaagaataaggaggagaagaacatatatattggcggtggtacatttgatgttagcatcttgaccattgatgatgtgatcgaggtgatctctactagtggagacactaatttgggaggagaggatttcaaccacagagtaatggagtatcttattaagttgatcaagaagcagtacaacagagacattagcaaggacaacaaggctatctggaagcttcacaaggaatgcgagagggccaagagagccttgtatttcccgcaccagttttctgtggggattgagtctcctttcgatggtatggatttctcggaatccttgacaagggagaggtttgaggaattgaacatggacttgttcaacaagaccatgaggatagtggaaaagactctgcaagatacaggattgaagaaaaaggatattcatgagattgtgcttgttggagggagcactaaaattccgaaggtgaagcagttgttgatggacttgtttaatgggaaggaaccaatgaagggacttaatcctgatgaggttgcggcctatggtgcttcaattcatggtggagtcctcagcggagaagctgattatgatactcatgtatactgcgattgtcataaatacttaaaaagtgtagttagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

379

Amino Acids

42.56

Weight (kDa)

6.49

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09080 AT1G09080
fragaria_vesca	FvH4_6g06470
malus_domestica	MD12G1215200.v1.1
prunus_persica	Prupe.6G321700_v2.0.a1
pyrus_communis	pycom04g17760 pycom12g20120
rosa_chinensis	RchiOBHm_Chr2g0142601 RchiOBHm_Chr3g0455591 RchiOBHm_Chr3g0455611 RchiOBHm_Chr3g0455631
rosa_laevigata	RLG00000019973 RLG00000019974 RLG00000025345 RLG00000025351
rosa_multiflora	Rmu_co8491437.1_g000001 Rmu_sc0000223.1_g000003 Rmu_sc0005164.1_g000002 Rmu_sc0015502.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102460
rosa_rugosa	Rorug03G0008500 Rorug03G0008700
rosa_samantha	Rh2AG426400 Rh2BG436000 Rh2CG412900 Rh2DG445800 Rh3AG067800 Rh3AG068000 Rh3DG070300
rosa_wichuraiana	Rw2G034940 Rw3G005440 Rw3G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	237
AccI	GTMKAC	1 cut(s)	1098
AccII	CGCG	1 cut(s)	479
AciI	CCGC	8 cut(s)	23, 175, 477, 479, 534, 758, 1034, 1071
AcoI	YGGCCR	2 cut(s)	107, 480
AcsI	RAATTY	2 cut(s)	191, 954
AfaI	GTAC	3 cut(s)	157, 541, 674
AfiI	CCNNNNNNNGG	4 cut(s)	116, 794, 822, 1010
AgsI	TTSAA	7 cut(s)	212, 455, 628, 844, 859, 907, 1050
AhlI	ACTAGT	1 cut(s)	593
AjnI	CCWGG	1 cut(s)	404
AluBI	AGCT	5 cut(s)	83, 353, 363, 715, 1079
AluI	AGCT	5 cut(s)	83, 353, 363, 715, 1079
Alw21I	GWGCWC	1 cut(s)	950
Alw26I	GTCTC	3 cut(s)	594, 675, 789
AoxI	GGCC	5 cut(s)	107, 474, 480, 735, 1035
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	2 cut(s)	191, 954
AseI	ATTAAT	1 cut(s)	462
AspS9I	GGNCC	1 cut(s)	735
AsuC2I	CCSGG	1 cut(s)	439
AsuHPI	GGTGA	5 cut(s)	19, 286, 299, 595, 976
AsuNHI	GCTAGC	1 cut(s)	359
AxyI	CCTNAGG	1 cut(s)	309
BaeI	ACNNNNGTAYC	2 cut(s)	1080, 1113
BalI	TGGCCA	1 cut(s)	109
BanII	GRGCYC	2 cut(s)	444, 471
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	950
BbvCI	CCTCAGC	2 cut(s)	354, 1067
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	4 cut(s)	67, 248, 788, 973
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BciT130I	CCWGG	1 cut(s)	406
BclI	TGATCA	1 cut(s)	660
BcnI	CCSGG	1 cut(s)	439
BcoDI	GTCTC	3 cut(s)	594, 675, 789
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	2 cut(s)	360, 594
BisI	GCNGC	5 cut(s)	84, 176, 477, 480, 1035
BlsI	GCNGC	5 cut(s)	85, 177, 478, 481, 1036
Bme1390I	CCNGG	2 cut(s)	406, 439
BmgT120I	GGNCC	1 cut(s)	735
BmiI	GGNNCC	2 cut(s)	133, 1002
BmrFI	CCNGG	2 cut(s)	406, 439
BmsI	GCATC	2 cut(s)	412, 564
BmtI	GCTAGC	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
Bpu10I	CCTNAGC	2 cut(s)	354, 1067
BpuMI	CCSGG	1 cut(s)	439
Bsa29I	ATCGAT	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	119
BsaJI	CCNNGG	5 cut(s)	104, 127, 294, 471, 477
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 794, 822, 1010
Bse1I	ACTGG	2 cut(s)	110, 763
Bse21I	CCTNAGG	1 cut(s)	309
Bse3DI	GCAATG	1 cut(s)	483
Bse8I	GATNNNNATC	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	406
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	5 cut(s)	104, 127, 294, 471, 477
BseGI	GGATG	2 cut(s)	78, 427
BseJI	GATNNNNATC	1 cut(s)	119
BseLI	CCNNNNNNNGG	4 cut(s)	116, 794, 822, 1010
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	3 cut(s)	300, 345, 1081
BseNI	ACTGG	2 cut(s)	110, 763
BseRI	GAGGAG	2 cut(s)	527, 630
BseXI	GCAGC	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	479
BshFI	GGCC	5 cut(s)	109, 476, 482, 737, 1037
BshVI	ATCGAT	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	950
BsiSI	CCGG	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	1026
BslI	CCNNNNNNNGG	4 cut(s)	116, 794, 822, 1010
BsmAI	GTCTC	3 cut(s)	594, 675, 789
BsmFI	GGGAC	1 cut(s)	1026
BsmI	GAATGC	1 cut(s)	731
BsnI	GGCC	5 cut(s)	109, 476, 482, 737, 1037
Bsp1286I	GDGCHC	3 cut(s)	444, 471, 950
Bsp143I	GATC	5 cut(s)	114, 379, 576, 585, 660
BspACI	CCGC	8 cut(s)	23, 175, 477, 479, 534, 758, 1034, 1071
BspANI	GGCC	5 cut(s)	109, 476, 482, 737, 1037
BspCNI	CTCAG	3 cut(s)	301, 346, 1080
BspDI	ATCGAT	1 cut(s)	32
BspFNI	CGCG	1 cut(s)	479
BspHI	TCATGA	1 cut(s)	922
BspLI	GGNNCC	2 cut(s)	133, 1002
BspOI	GCTAGC	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	110, 763
BssECI	CCNNGG	5 cut(s)	104, 127, 294, 471, 477
BssMI	GATC	5 cut(s)	114, 379, 576, 585, 660
BssNAI	GTATAC	1 cut(s)	1099
BssT1I	CCWWGG	3 cut(s)	104, 294, 471
Bst1107I	GTATAC	1 cut(s)	1099
Bst2UI	CCWGG	1 cut(s)	406
Bst4CI	ACNGT	1 cut(s)	401
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstC8I	GCNNGC	3 cut(s)	361, 411, 427
BstDEI	CTNAG	5 cut(s)	309, 336, 354, 417, 1067
BstDSI	CCRYGG	1 cut(s)	477
BstENI	CCTNNNNNAGG	1 cut(s)	820
BstF5I	GGATG	2 cut(s)	78, 427
BstFNI	CGCG	1 cut(s)	479
BstKTI	GATC	5 cut(s)	117, 382, 579, 588, 663
BstMAI	GTCTC	3 cut(s)	594, 675, 789
BstMBI	GATC	5 cut(s)	114, 379, 576, 585, 660
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 485, 743, 1043
BstNI	CCWGG	1 cut(s)	406
BstSCI	CCNGG	2 cut(s)	404, 437
BstUI	CGCG	1 cut(s)	479
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	20
BstZ17I	GTATAC	1 cut(s)	1099
Bsu15I	ATCGAT	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	309
BsuRI	GGCC	5 cut(s)	109, 476, 482, 737, 1037
BsuTUI	ATCGAT	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	2 cut(s)	78, 427
BtsIMutI	CAGTG	2 cut(s)	117, 325
Cac8I	GCNNGC	3 cut(s)	361, 411, 427
CciI	TCATGA	1 cut(s)	922
Cfr13I	GGNCC	1 cut(s)	735
Cfr42I	CCGCGG	1 cut(s)	480
ClaI	ATCGAT	1 cut(s)	32
CseI	GACGC	1 cut(s)	396
Csp6I	GTAC	3 cut(s)	156, 540, 673
CviAII	CATG	6 cut(s)	144, 847, 868, 923, 1055, 1094
CviQI	GTAC	3 cut(s)	156, 540, 673
DdeI	CTNAG	5 cut(s)	309, 336, 354, 417, 1067
DpnI	GATC	5 cut(s)	116, 381, 578, 587, 662
DpnII	GATC	5 cut(s)	114, 379, 576, 585, 660
EaeI	YGGCCR	2 cut(s)	107, 480
Eco130I	CCWWGG	3 cut(s)	104, 294, 471
Eco24I	GRGCYC	2 cut(s)	444, 471
Eco32I	GATATC	1 cut(s)	169
Eco81I	CCTNAGG	1 cut(s)	309
EcoNI	CCTNNNNNAGG	1 cut(s)	820
EcoRII	CCWGG	1 cut(s)	404
EcoRV	GATATC	1 cut(s)	169
EcoT14I	CCWWGG	3 cut(s)	104, 294, 471
EcoT38I	GRGCYC	2 cut(s)	444, 471
ErhI	CCWWGG	3 cut(s)	104, 294, 471
FaeI	CATG	6 cut(s)	147, 850, 871, 926, 1058, 1097
FalI	AAGNNNNNCTT	2 cut(s)	731, 763
FaqI	GGGAC	1 cut(s)	1026
FatI	CATG	6 cut(s)	143, 846, 867, 922, 1054, 1093
FauI	CCCGC	1 cut(s)	765
FbaI	TGATCA	1 cut(s)	660
FblI	GTMKAC	1 cut(s)	1098
Fnu4HI	GCNGC	5 cut(s)	84, 176, 477, 480, 1035
FokI	GGATG	2 cut(s)	85, 434
FriOI	GRGCYC	2 cut(s)	444, 471
Fsp4HI	GCNGC	5 cut(s)	84, 176, 477, 480, 1035
FspBI	CTAG	2 cut(s)	360, 594
GluI	GCNGC	5 cut(s)	84, 176, 477, 480, 1035
HaeIII	GGCC	5 cut(s)	109, 476, 482, 737, 1037
HapII	CCGG	1 cut(s)	438
HgaI	GACGC	1 cut(s)	396
Hin1II	CATG	6 cut(s)	147, 850, 871, 926, 1058, 1097
HindIII	AAGCTT	1 cut(s)	713
HinfI	GANTC	5 cut(s)	120, 782, 812, 886, 1062
HpaII	CCGG	1 cut(s)	438
HphI	GGTGA	5 cut(s)	19, 286, 299, 595, 976
Hpy166II	GTNNAC	2 cut(s)	247, 1099
Hpy188I	TCNGA	5 cut(s)	58, 119, 131, 811, 960
Hpy188III	TCNNGA	6 cut(s)	497, 559, 664, 709, 923, 1022
Hpy8I	GTNNAC	2 cut(s)	247, 1099
HpyAV	CCTTC	4 cut(s)	337, 955, 991, 1003
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	3 cut(s)	86, 425, 892
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 485, 743, 1043
HpyF3I	CTNAG	5 cut(s)	309, 336, 354, 417, 1067
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	6 cut(s)	147, 850, 871, 926, 1058, 1097
Ksp22I	TGATCA	1 cut(s)	660
KspI	CCGCGG	1 cut(s)	480
Kzo9I	GATC	5 cut(s)	114, 379, 576, 585, 660
LmnI	GCTCC	1 cut(s)	945
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	2 cut(s)	412, 564
MaeI	CTAG	2 cut(s)	360, 594
MaeII	ACGT	1 cut(s)	154
MalI	GATC	5 cut(s)	116, 381, 578, 587, 662
MboI	GATC	5 cut(s)	114, 379, 576, 585, 660
MboII	GAAGA	6 cut(s)	22, 25, 386, 389, 529, 919
MhlI	GDGCHC	3 cut(s)	444, 471, 950
MlsI	TGGCCA	1 cut(s)	109
MluCI	AATT	7 cut(s)	191, 432, 459, 607, 839, 954, 1050
MluNI	TGGCCA	1 cut(s)	109
MlyI	GAGTC	3 cut(s)	791, 880, 1071
MmeI	TCCRAC	1 cut(s)	919
Mox20I	TGGCCA	1 cut(s)	109
MscI	TGGCCA	1 cut(s)	109
MseI	TTAA	7 cut(s)	195, 222, 462, 654, 990, 1017, 1121
Msp20I	TGGCCA	1 cut(s)	109
MspA1I	CMGCKG	4 cut(s)	175, 353, 479, 1071
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	2 cut(s)	406, 439
Mva1269I	GAATGC	1 cut(s)	731
MvaI	CCWGG	1 cut(s)	406
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	4 cut(s)	83, 485, 743, 1043
NciI	CCSGG	1 cut(s)	439
NdeII	GATC	5 cut(s)	114, 379, 576, 585, 660
NheI	GCTAGC	1 cut(s)	359
NlaIII	CATG	6 cut(s)	147, 850, 871, 926, 1058, 1097
NlaIV	GGNNCC	2 cut(s)	133, 1002
PagI	TCATGA	1 cut(s)	922
PctI	GAATGC	1 cut(s)	731
PfeI	GAWTC	2 cut(s)	120, 812
PkrI	GCNGC	5 cut(s)	85, 177, 478, 481, 1036
PleI	GAGTC	3 cut(s)	790, 880, 1070
PpsI	GAGTC	3 cut(s)	790, 880, 1070
PshBI	ATTAAT	1 cut(s)	462
PsiI	TTATAA	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	404
PspN4I	GGNNCC	2 cut(s)	133, 1002
PspPI	GGNCC	1 cut(s)	735
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	3 cut(s)	157, 541, 674
RsaNI	GTAC	3 cut(s)	156, 540, 673
SacII	CCGCGG	1 cut(s)	480
SaqAI	TTAA	7 cut(s)	195, 222, 462, 654, 990, 1017, 1121
SatI	GCNGC	5 cut(s)	84, 176, 477, 480, 1035
Sau3AI	GATC	5 cut(s)	114, 379, 576, 585, 660
Sau96I	GGNCC	1 cut(s)	735
SchI	GAGTC	3 cut(s)	791, 880, 1071
ScrFI	CCNGG	2 cut(s)	406, 439
SduI	GDGCHC	3 cut(s)	444, 471, 950
SfaNI	GCATC	2 cut(s)	412, 564
Sfr303I	CCGCGG	1 cut(s)	480
SgrBI	CCGCGG	1 cut(s)	480
SpeI	ACTAGT	1 cut(s)	593
Sse9I	AATT	7 cut(s)	191, 432, 459, 607, 839, 954, 1050
SsiI	CCGC	8 cut(s)	23, 175, 477, 479, 534, 758, 1034, 1071
SspMI	CTAG	2 cut(s)	360, 594
StyD4I	CCNGG	2 cut(s)	404, 437
StyI	CCWWGG	3 cut(s)	104, 294, 471
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	3 cut(s)	32, 579, 792
TasI	AATT	7 cut(s)	191, 432, 459, 607, 839, 954, 1050
TatI	WGTACW	1 cut(s)	672
TauI	GCSGC	4 cut(s)	178, 479, 482, 1037
TfiI	GAWTC	2 cut(s)	120, 812
Tru1I	TTAA	7 cut(s)	195, 222, 462, 654, 990, 1017, 1121
Tru9I	TTAA	7 cut(s)	195, 222, 462, 654, 990, 1017, 1121
TscAI	CASTG	2 cut(s)	117, 325
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	6 cut(s)	84, 132, 356, 911, 1022, 1043
TspRI	CASTG	2 cut(s)	117, 325
VspI	ATTAAT	1 cut(s)	462
XagI	CCTNNNNNAGG	1 cut(s)	820
XapI	RAATTY	2 cut(s)	191, 954
XcmI	CCANNNNNNNNNTGG	1 cut(s)	874
XmiI	GTMKAC	1 cut(s)	1098
XspI	CTAG	2 cut(s)	360, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.