Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0004277

Physical Location & Seq

Genomic Coordinates Reverse (-)

4728616 .. 4728957

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG068000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGATTTCTCGGAATCCTTGACAAGGGAGAGGTTTGAGGAATTGAACATGGACTTGTTCAACAAGACCATGGGGATAGTGGAAAAGACTCTGCAAGATACAGGATTGAAGAAAAAGGATATTCATGAGATTGTGCTTGTTGGAGGGAGCACTAAAATTCCGAAGGTGAAGCAGTTGTTGATGGACTTGTTTAATGGGAAGGAACCAATGAAGGGACTTAATCCTGATGAGGTTGCGGCCTATGGTGCTTCAATTCATGGTGGAGTCCTCAGCGGAGAAGCTGATTATGATACTCATGTATACTGCGATTGTCATAAATACTTAAAAAGTGTAGTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

113

Amino Acids

12.61

Weight (kDa)

5.51

Isoelectric Point (pI)

22.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	2 - 103	5.4e-34	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09080 AT1G09080
fragaria_vesca	FvH4_6g06470
malus_domestica	MD12G1215200.v1.1
prunus_persica	Prupe.6G321700_v2.0.a1
pyrus_communis	pycom04g17760 pycom12g20120
rosa_chinensis	RchiOBHm_Chr2g0142601 RchiOBHm_Chr3g0455591 RchiOBHm_Chr3g0455611 RchiOBHm_Chr3g0455631
rosa_laevigata	RLG00000019973 RLG00000019974 RLG00000025345 RLG00000025351
rosa_multiflora	Rmu_co8491437.1_g000001 Rmu_sc0000223.1_g000003 Rmu_sc0005164.1_g000002 Rmu_sc0015502.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102460
rosa_rugosa	Rorug03G0008500 Rorug03G0008700
rosa_samantha	Rh2AG426400 Rh2BG436000 Rh2CG412900 Rh2DG445800 Rh3AG067800 Rh3AG068000 Rh3DG070300
rosa_wichuraiana	Rw2G034940 Rw3G005440 Rw3G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	300
AciI	CCGC	2 cut(s)	236, 273
AcsI	RAATTY	1 cut(s)	156
AfiI	CCNNNNNNNGG	2 cut(s)	24, 212
AgsI	TTSAA	4 cut(s)	46, 61, 109, 252
AluBI	AGCT	1 cut(s)	281
AluI	AGCT	1 cut(s)	281
Alw21I	GWGCWC	1 cut(s)	152
AoxI	GGCC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	178
BaeI	ACNNNNGTAYC	2 cut(s)	282, 315
Bbv12I	GWGCWC	1 cut(s)	152
BbvCI	CCTCAGC	1 cut(s)	269
BccI	CCATC	1 cut(s)	175
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 212
BseDI	CCNNGG	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	24, 212
BseMII	CTCAG	1 cut(s)	283
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	2 cut(s)	24, 212
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	2 cut(s)	236, 273
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	282
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	69
BssNAI	GTATAC	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	69
Bst1107I	GTATAC	1 cut(s)	301
BstDEI	CTNAG	1 cut(s)	269
BstDSI	CCRYGG	1 cut(s)	69
BstENI	CCTNNNNNAGG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstZ17I	GTATAC	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	69
CciI	TCATGA	1 cut(s)	124
CviAII	CATG	5 cut(s)	49, 70, 125, 257, 296
CviJI	RGCY	2 cut(s)	239, 281
CviKI_1	RGCY	2 cut(s)	239, 281
DdeI	CTNAG	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	69
EcoNI	CCTNNNNNAGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	5 cut(s)	52, 73, 128, 260, 299
FaiI	YATR	9 cut(s)	50, 71, 126, 243, 258, 288, 297, 301, 315
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	5 cut(s)	48, 69, 124, 256, 295
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	237
GluI	GCNGC	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	239
Hin1II	CATG	5 cut(s)	52, 73, 128, 260, 299
HinfI	GANTC	3 cut(s)	14, 88, 264
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	2 cut(s)	13, 162
Hpy188III	TCNNGA	2 cut(s)	125, 224
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	3 cut(s)	157, 193, 205
HpyCH4V	TGCA	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	269
Hsp92II	CATG	5 cut(s)	52, 73, 128, 260, 299
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	2 cut(s)	87, 237
MboII	GAAGA	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	3 cut(s)	41, 156, 252
MlyI	GAGTC	2 cut(s)	82, 273
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	5 cut(s)	24, 31, 137, 223, 278
MseI	TTAA	3 cut(s)	192, 219, 323
MspA1I	CMGCKG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	245
NcoI	CCATGG	1 cut(s)	69
NlaIII	CATG	5 cut(s)	52, 73, 128, 260, 299
NlaIV	GGNNCC	1 cut(s)	204
PagI	TCATGA	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	2 cut(s)	82, 272
PpsI	GAGTC	2 cut(s)	82, 272
PspN4I	GGNNCC	1 cut(s)	204
SaqAI	TTAA	3 cut(s)	192, 219, 323
SatI	GCNGC	1 cut(s)	237
SchI	GAGTC	2 cut(s)	82, 273
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	4 cut(s)	35, 168, 234, 283
Sse9I	AATT	3 cut(s)	41, 156, 252
SsiI	CCGC	2 cut(s)	236, 273
StyI	CCWWGG	1 cut(s)	69
TasI	AATT	3 cut(s)	41, 156, 252
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	3 cut(s)	192, 219, 323
Tru9I	TTAA	3 cut(s)	192, 219, 323
TspDTI	ATGAA	3 cut(s)	113, 224, 245
XagI	CCTNNNNNAGG	1 cut(s)	22
XapI	RAATTY	1 cut(s)	156
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.