Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004277

Physical Location & Seq

Genomic Coordinates Reverse (-)

59442438 .. 59443118

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019973

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGACATGGGTGACAGGGTGCATGAATGTATACCAAGGAACACTGTTATCCCAAATAAGATGTCAACGAAACTTTTCCTCAGAACTAAAGAAAATACAGCCCCCATTGTGGCCTATGAACATGAAGGAAGACTATTGCCAAATGAATGTTCTGAGATTAAAAGAATTCCTGTAAGATTAGACAAAGCGACCCGAATTGAAGTGTTTTTTGATGTCGATGCAAATGGGATTCTACATGTGACCATTGAAGAGGATGTCAAAGCAAGGGATAACGTACTTGCCAGGCTTAGTCTTGAGGATGTGGCACACGTCGCTAATACATTAAAAGGTATTATGTATCCTTCCAATCTGGACAAGCGGAGGAAACTTCATAGCACAATAGAGAAGGCTCGCGCATTGTTGCAAACTAAATTTGATACCGTAGAGCAGGAAGATTTTGAAGAAATGGAGGAGAAGCTTAGAGAACTAGTAAGAATATTTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

162

Amino Acids

18.67

Weight (kDa)

5.99

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	3 - 155	2.8e-07	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09080 AT1G09080
fragaria_vesca	FvH4_6g06470
malus_domestica	MD12G1215200.v1.1
prunus_persica	Prupe.6G321700_v2.0.a1
pyrus_communis	pycom04g17760 pycom12g20120
rosa_chinensis	RchiOBHm_Chr2g0142601 RchiOBHm_Chr3g0455591 RchiOBHm_Chr3g0455611 RchiOBHm_Chr3g0455631
rosa_laevigata	RLG00000019973 RLG00000019974 RLG00000025345 RLG00000025351
rosa_multiflora	Rmu_co8491437.1_g000001 Rmu_sc0000223.1_g000003 Rmu_sc0005164.1_g000002 Rmu_sc0015502.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102460
rosa_rugosa	Rorug03G0008500 Rorug03G0008700
rosa_samantha	Rh2AG426400 Rh2BG436000 Rh2CG412900 Rh2DG445800 Rh3AG067800 Rh3AG068000 Rh3DG070300
rosa_wichuraiana	Rw2G034940 Rw3G005440 Rw3G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	31
AccII	CGCG	1 cut(s)	393
AciI	CCGC	1 cut(s)	358
AcsI	RAATTY	2 cut(s)	165, 410
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	1 cut(s)	109
AflIII	ACRYGT	2 cut(s)	235, 307
AgsI	TTSAA	3 cut(s)	200, 248, 440
AhlI	ACTAGT	1 cut(s)	466
AjiI	CACGTC	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	281
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AluBI	AGCT	1 cut(s)	457
AluI	AGCT	1 cut(s)	457
AoxI	GGCC	1 cut(s)	111
ApoI	RAATTY	2 cut(s)	165, 410
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
Asp700I	GAANNNNTTC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	283
BciVI	GTATCC	1 cut(s)	348
BcuI	ACTAGT	1 cut(s)	466
BfaI	CTAG	1 cut(s)	467
BfuI	GTATCC	1 cut(s)	348
Bme1390I	CCNGG	1 cut(s)	283
BmgBI	CACGTC	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	283
BmsI	GCATC	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	136
BpuEI	CTTGAG	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	2 cut(s)	259, 304
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMII	CTCAG	2 cut(s)	94, 144
BseRI	GAGGAG	1 cut(s)	464
Bsh1236I	CGCG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	109
BsnI	GGCC	1 cut(s)	113
BspACI	CCGC	1 cut(s)	358
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	2 cut(s)	93, 145
BspFNI	CGCG	1 cut(s)	393
BssECI	CCNNGG	1 cut(s)	35
BssNAI	GTATAC	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	35
Bst1107I	GTATAC	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	2 cut(s)	46, 421
Bst6I	CTCTTC	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	4 cut(s)	80, 153, 287, 458
BstF5I	GGATG	2 cut(s)	259, 304
BstFNI	CGCG	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	395
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	1 cut(s)	283
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	281
BstUI	CGCG	1 cut(s)	393
BstV2I	GAAGAC	1 cut(s)	136
BstZ17I	GTATAC	1 cut(s)	32
BsuI	GTATCC	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	113
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	2 cut(s)	259, 304
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	391
CfoI	GCGC	1 cut(s)	395
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	4 cut(s)	7, 23, 122, 236
CviJI	RGCY	5 cut(s)	101, 113, 286, 389, 457
CviKI_1	RGCY	5 cut(s)	101, 113, 286, 389, 457
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	4 cut(s)	80, 153, 287, 458
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	4 cut(s)	10, 26, 125, 239
FaiI	YATR	9 cut(s)	8, 24, 32, 117, 123, 237, 335, 372, 484
FatI	CATG	4 cut(s)	6, 22, 121, 235
FblI	GTMKAC	1 cut(s)	31
FokI	GGATG	2 cut(s)	266, 311
FspBI	CTAG	1 cut(s)	467
GlaI	GCGC	1 cut(s)	394
HaeIII	GGCC	1 cut(s)	113
HhaI	GCGC	1 cut(s)	395
Hin1II	CATG	4 cut(s)	10, 26, 125, 239
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	1 cut(s)	229
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	2 cut(s)	32, 66
Hpy188I	TCNGA	2 cut(s)	83, 154
Hpy188III	TCNNGA	2 cut(s)	293, 350
Hpy8I	GTNNAC	2 cut(s)	32, 66
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	3 cut(s)	119, 351, 379
HpyCH4III	ACNGT	2 cut(s)	46, 421
HpyCH4IV	ACGT	2 cut(s)	273, 309
HpyCH4V	TGCA	3 cut(s)	22, 221, 403
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	4 cut(s)	80, 153, 287, 458
HpySE526I	ACGT	2 cut(s)	273, 309
Hsp92II	CATG	4 cut(s)	10, 26, 125, 239
HspAI	GCGC	1 cut(s)	393
LpnPI	CCDG	5 cut(s)	183, 268, 295, 335, 413
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	2 cut(s)	273, 309
MaeIII	GTNAC	2 cut(s)	11, 238
MboII	GAAGA	4 cut(s)	141, 260, 443, 452
MluCI	AATT	3 cut(s)	165, 195, 410
MnlI	CCTC	5 cut(s)	89, 244, 289, 354, 442
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	2 cut(s)	159, 323
MspR9I	CCNGG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	283
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	311
NlaIII	CATG	4 cut(s)	10, 26, 125, 239
NmuCI	GTSAC	2 cut(s)	11, 238
NspI	RCATGY	1 cut(s)	239
PciI	ACATGT	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	229
PscI	ACATGT	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SaqAI	TTAA	2 cut(s)	159, 323
ScrFI	CCNGG	1 cut(s)	283
SetI	ASST	4 cut(s)	276, 312, 331, 459
SfaNI	GCATC	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SpeI	ACTAGT	1 cut(s)	466
Sse9I	AATT	3 cut(s)	165, 195, 410
SsiI	CCGC	1 cut(s)	358
SspI	AATATT	1 cut(s)	477
SspMI	CTAG	1 cut(s)	467
StyD4I	CCNGG	1 cut(s)	281
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	46, 421
TaiI	ACGT	2 cut(s)	276, 312
TaqI	TCGA	1 cut(s)	216
TasI	AATT	3 cut(s)	165, 195, 410
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	2 cut(s)	159, 323
Tru9I	TTAA	2 cut(s)	159, 323
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	2 cut(s)	11, 238
Tsp45I	GTSAC	2 cut(s)	11, 238
TspDTI	ATGAA	5 cut(s)	39, 132, 138, 159, 359
TspRI	CASTG	1 cut(s)	49
XapI	RAATTY	2 cut(s)	165, 410
XceI	RCATGY	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.