Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004277

Physical Location & Seq

Genomic Coordinates Reverse (-)

5308503 .. 5309942

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42255

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGATATTGACTAAGATGATGGAAACAGCTGAGGCTTATTTAGGGAAGAAGATCAAATACGCTGTCATAACTGTTCCAGCTTATTTCAATGATGCACAAAGGCAAGCTACTAAGGATGCAGGCAAAATTGCCGGGCTTAAAGTGGATCGACATCTCTTGACCATTGATGATGGTGTGATCGAGGTGATCTCTACGAGTGGAGGCACTCATTTGGGAGGAGAGGATTTCAACCACAGAGTAATGGAGTATCTTATTAAGTTGATCAAGAAGAAGTACAACAGAGACATTAGCAAGGACAACAAGGCTCTCTGGAAGCTTCACAGGGCATGCGAGACGGCCAATGGAGCCTTGTTTTTCCTGCACCAGTTGGAGATTGAGACTCTGCAAGATGGAGGATTGAAGAACAAGGATATTCATGATATCGTGCTTGCTGGAGGGAGCACTAAAATTCCGAAGGGACTTAATCCCGATGAGGTCGCGGCCTATGGTGCTTCAGTTCATGGTGGAGTCCTCAGCGGAGAAGCTGAGTATGATACTCATAACTCATGTATACTGAGATTGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

188

Amino Acids

20.64

Weight (kDa)

7.09

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	1 - 50	3.5e-22	Hsp70 protein
HSP70	PF00012	52 - 118	5e-17	Hsp70 protein
HSP70	PF00012	126 - 176	9.6e-08	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09080 AT1G09080
fragaria_vesca	FvH4_6g06470
malus_domestica	MD12G1215200.v1.1
prunus_persica	Prupe.6G321700_v2.0.a1
pyrus_communis	pycom04g17760 pycom12g20120
rosa_chinensis	RchiOBHm_Chr2g0142601 RchiOBHm_Chr3g0455591 RchiOBHm_Chr3g0455611 RchiOBHm_Chr3g0455631
rosa_laevigata	RLG00000019973 RLG00000019974 RLG00000025345 RLG00000025351
rosa_multiflora	Rmu_co8491437.1_g000001 Rmu_sc0000223.1_g000003 Rmu_sc0005164.1_g000002 Rmu_sc0015502.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102460
rosa_rugosa	Rorug03G0008500 Rorug03G0008700
rosa_samantha	Rh2AG426400 Rh2BG436000 Rh2CG412900 Rh2DG445800 Rh3AG067800 Rh3AG068000 Rh3DG070300
rosa_wichuraiana	Rw2G034940 Rw3G005440 Rw3G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	550
AccII	CGCG	1 cut(s)	479
AciI	CCGC	2 cut(s)	479, 516
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	447
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	1 cut(s)	275
AgsI	TTSAA	3 cut(s)	88, 229, 400
AluBI	AGCT	5 cut(s)	29, 80, 107, 316, 524
AluI	AGCT	5 cut(s)	29, 80, 107, 316, 524
Alw21I	GWGCWC	1 cut(s)	443
Alw26I	GTCTC	3 cut(s)	276, 326, 371
AlwI	GGATC	1 cut(s)	153
AoxI	GGCC	2 cut(s)	336, 480
ApoI	RAATTY	1 cut(s)	447
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	196
BarI	GAAGNNNNNNTAC	2 cut(s)	41, 73
Bbv12I	GWGCWC	1 cut(s)	443
BbvCI	CCTCAGC	2 cut(s)	30, 512
BccI	CCATC	3 cut(s)	13, 164, 383
BceAI	ACGGC	1 cut(s)	351
BclI	TGATCA	1 cut(s)	261
BcnI	CCSGG	1 cut(s)	133
BcoDI	GTCTC	3 cut(s)	276, 326, 371
BisI	GCNGC	1 cut(s)	480
BlsI	GCNGC	1 cut(s)	481
Bme1390I	CCNGG	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	346
BmrFI	CCNGG	1 cut(s)	133
BmsI	GCATC	2 cut(s)	82, 106
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
BpmI	CTGGAG	1 cut(s)	453
Bpu10I	CCTNAGC	2 cut(s)	30, 512
BpuMI	CCSGG	1 cut(s)	133
BsaBI	GATNNNNATC	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	364
Bse8I	GATNNNNATC	1 cut(s)	150
BseGI	GGATG	1 cut(s)	121
BseJI	GATNNNNATC	1 cut(s)	150
BseMII	CTCAG	4 cut(s)	21, 516, 526, 545
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	1 cut(s)	231
BsgI	GTGCAG	1 cut(s)	344
Bsh1236I	CGCG	1 cut(s)	479
BshFI	GGCC	2 cut(s)	338, 482
BsiHKAI	GWGCWC	1 cut(s)	443
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	471
BsmAI	GTCTC	3 cut(s)	276, 326, 371
BsmBI	CGTCTC	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	471
BsnI	GGCC	2 cut(s)	338, 482
Bsp1286I	GDGCHC	1 cut(s)	443
Bsp143I	GATC	5 cut(s)	51, 145, 177, 186, 261
BspACI	CCGC	2 cut(s)	479, 516
BspANI	GGCC	2 cut(s)	338, 482
BspCNI	CTCAG	4 cut(s)	22, 517, 525, 546
BspFNI	CGCG	1 cut(s)	479
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	346
BspPI	GGATC	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	364
BssMI	GATC	5 cut(s)	51, 145, 177, 186, 261
BssNAI	GTATAC	1 cut(s)	551
Bst1107I	GTATAC	1 cut(s)	551
Bst4CI	ACNGT	1 cut(s)	73
BstC8I	GCNNGC	4 cut(s)	105, 121, 328, 429
BstDEI	CTNAG	6 cut(s)	12, 30, 111, 512, 525, 554
BstF5I	GGATG	1 cut(s)	121
BstFNI	CGCG	1 cut(s)	479
BstKTI	GATC	5 cut(s)	54, 148, 180, 189, 264
BstMAI	GTCTC	3 cut(s)	276, 326, 371
BstMBI	GATC	5 cut(s)	51, 145, 177, 186, 261
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 488
BstNSI	RCATGY	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	131
BstUI	CGCG	1 cut(s)	479
BstZ17I	GTATAC	1 cut(s)	551
BsuRI	GGCC	2 cut(s)	338, 482
BtsCI	GGATG	1 cut(s)	121
Cac8I	GCNNGC	4 cut(s)	105, 121, 328, 429
CciI	TCATGA	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	4 cut(s)	327, 416, 500, 546
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	6 cut(s)	12, 30, 111, 512, 525, 554
DpnI	GATC	5 cut(s)	53, 147, 179, 188, 263
DpnII	GATC	5 cut(s)	51, 145, 177, 186, 261
EaeI	YGGCCR	1 cut(s)	336
Eco32I	GATATC	1 cut(s)	421
Eco57I	CTGAAG	1 cut(s)	477
EcoRV	GATATC	1 cut(s)	421
Esp3I	CGTCTC	1 cut(s)	326
FaeI	CATG	4 cut(s)	330, 419, 503, 549
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	4 cut(s)	326, 415, 499, 545
FbaI	TGATCA	1 cut(s)	261
FblI	GTMKAC	1 cut(s)	550
Fnu4HI	GCNGC	1 cut(s)	480
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	480
GluI	GCNGC	1 cut(s)	480
GsuI	CTGGAG	1 cut(s)	453
HaeIII	GGCC	2 cut(s)	338, 482
HapII	CCGG	1 cut(s)	132
Hin1II	CATG	4 cut(s)	330, 419, 503, 549
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	2 cut(s)	379, 507
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	551
Hpy188I	TCNGA	1 cut(s)	453
Hpy188III	TCNNGA	5 cut(s)	157, 265, 310, 416, 467
Hpy8I	GTNNAC	1 cut(s)	551
HpyAV	CCTTC	1 cut(s)	448
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	4 cut(s)	95, 119, 361, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 488
HpyF3I	CTNAG	6 cut(s)	12, 30, 111, 512, 525, 554
Hsp92II	CATG	4 cut(s)	330, 419, 503, 549
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	5 cut(s)	51, 145, 177, 186, 261
LmnI	GCTCC	2 cut(s)	344, 438
LpnPI	CCDG	8 cut(s)	90, 105, 145, 295, 307, 371, 377, 417
LweI	GCATC	2 cut(s)	82, 106
MalI	GATC	5 cut(s)	53, 147, 179, 188, 263
MboI	GATC	5 cut(s)	51, 145, 177, 186, 261
MboII	GAAGA	4 cut(s)	58, 61, 280, 412
MhlI	GDGCHC	1 cut(s)	443
MluCI	AATT	2 cut(s)	126, 447
MlyI	GAGTC	2 cut(s)	373, 516
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	9 cut(s)	25, 175, 194, 209, 214, 386, 428, 466, 521
MseI	TTAA	3 cut(s)	138, 255, 462
MspA1I	CMGCKG	2 cut(s)	29, 516
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	133
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	2 cut(s)	344, 488
NciI	CCSGG	1 cut(s)	133
NdeII	GATC	5 cut(s)	51, 145, 177, 186, 261
NlaIII	CATG	4 cut(s)	330, 419, 503, 549
NlaIV	GGNNCC	1 cut(s)	346
NspI	RCATGY	1 cut(s)	330
PaeI	GCATGC	1 cut(s)	330
PagI	TCATGA	1 cut(s)	415
PkrI	GCNGC	1 cut(s)	481
PleI	GAGTC	2 cut(s)	373, 515
PpsI	GAGTC	2 cut(s)	373, 515
PspN4I	GGNNCC	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SaqAI	TTAA	3 cut(s)	138, 255, 462
SatI	GCNGC	1 cut(s)	480
Sau3AI	GATC	5 cut(s)	51, 145, 177, 186, 261
SchI	GAGTC	2 cut(s)	373, 516
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	443
SetI	ASST	7 cut(s)	31, 82, 109, 186, 318, 477, 526
SfaNI	GCATC	2 cut(s)	82, 106
SphI	GCATGC	1 cut(s)	330
Sse9I	AATT	2 cut(s)	126, 447
SsiI	CCGC	2 cut(s)	479, 516
StyD4I	CCNGG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	2 cut(s)	148, 180
TasI	AATT	2 cut(s)	126, 447
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	482
Tru1I	TTAA	3 cut(s)	138, 255, 462
Tru9I	TTAA	3 cut(s)	138, 255, 462
TspDTI	ATGAA	2 cut(s)	404, 488
XapI	RAATTY	1 cut(s)	447
XceI	RCATGY	1 cut(s)	330
XmiI	GTMKAC	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.