pycom05g03760

CD2 antigen cytoplasmic tail-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0003252
Physical Location & Seq
Reverse (-)
4296873 .. 4302242
5370 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1266 bp
ATGGAAGGCAATCGGAATTTGAAACGTCCCTTCTTCGAAGACGACAGCTCCGGCAAACCTCCGGCGCAAAAGAGGGTTCGGTTCCCTAAGGGGAAGAAGGCGAGGCCGGAAGATGAAGCGGCACTCAAATCCATACCTGTGGAGGCCATTGGGCCGACTCCGGCGGCGGCGACGGACCCTCGGGCCGCCGCCAAAGAGCGTGCCAAGCGCCGCAGCCAAATCACAACTGAGCTCTTCACTGAAGACGCTGCAGGCGTTCTCAGCGATGTCTCTGCTGCTGAAGTTACTTACAAGGATTACGAGGACTTTGTTGAGGATGGGATTCGAATAGAACCTTTCAACTTGAACAAGGAGAGGGAAGAAGGTTATTTTGATGCAAATGGAAATTTTGTTGAATATGCCAATAAAAATGAAGTCAAGGATGCATGGCTTGATAGTGTTGAAGTTGTTACAAAATATGCCGGAAAAGACATTGTAGTAACAAAAGACTATGATGATGTCCAAGATTTATCTTCTGATGACATTGGGAAGATAAAAAGACGTATTGCTGATGTGCTTGAACCAGGAGAAACGGTTCTACACGCTTTGAGAAGATTGAAGGGAACACCTAAAAACAAGAAGGAGAAGATGTCAGCTGAAACGAAGATAGTATTTGACCAGTTAACTGAAGATGCCATGAACCTGATGGATAACGGTGAATCCAATGTTTATCATGAGAAGAAGGAGATTTTTGAGCGTGAGGCAGAAGGATATGAGAGTTTAGCACGGGCAAGAAGGGAACCCACATCTATTAGTGCATATCAAGAGAGATCTGTTCTCGGCATGGAGTGGGAGTCCTCTGATGTAACAAATCCTGGAGCACCCTCTTCAATACTGCCGGAAACTTCTGTGGCTACATCCAGTTCTAATGCAACCACTGTAGAAATCTCAAGTAATGGTGATGATGCATTTGATATGTTTGCAGAAGATGATGAACATGCAATTGCTAAACCTTCTGAAGGAAGTAATGTGATTTCTGACCCTAATTCTTATTGCGTCAGCTCACCGTCATCAAACAACCTAAACAATTATTCAGAGAATGGAGTTTTGCAAAATGATTATGTGTTTGATGAGTCTTCTGGGTACTATTATAGCAGCAGTTTGGGATATTATTATGACCCATCTACAGGACTCTATTGCTCTGCTTCATCAGGGCTATGGTACTCATTCAATGAGGAAACTGGTGTATATGATGAGATTCACCAGACTACAACCACTGTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

422

Amino Acids

46.71

Weight (kDa)

4.56

Isoelectric Point (pI)

51.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OCRE PF17780 364 - 412 4e-16 OCRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 119, 164, 167, 186, 189, 211
AcsI RAATTY 2 cut(s) 16, 385
AcuI CTGAAG 4 cut(s) 261, 300, 687, 1017
AfaI GTAC 2 cut(s) 1124, 1202
AfiI CCNNNNNNNGG 2 cut(s) 998, 1166
AgsI TTSAA 9 cut(s) 22, 340, 346, 395, 443, 560, 598, 870, 1210
AjnI CCWGG 2 cut(s) 562, 853
AloI GAACNNNNNNTCC 2 cut(s) 558, 590
AluBI AGCT 4 cut(s) 48, 232, 635, 1041
AluI AGCT 4 cut(s) 48, 232, 635, 1041
Alw21I GWGCWC 2 cut(s) 234, 862
Alw26I GTCTC 1 cut(s) 274
Ama87I CYCGRG 1 cut(s) 180
AoxI GGCC 4 cut(s) 104, 144, 152, 183
ApeKI GCWGC 4 cut(s) 213, 248, 275, 1134
ApoI RAATTY 2 cut(s) 16, 385
Asp700I GAANNNNTTC 1 cut(s) 573
AspLEI GCGC 2 cut(s) 67, 210
AspS9I GGNCC 3 cut(s) 152, 175, 183
AsuHPI GGTGA 4 cut(s) 707, 950, 1035, 1232
AsuII TTCGAA 2 cut(s) 36, 325
AvaI CYCGRG 1 cut(s) 180
AvaII GGWCC 1 cut(s) 175
AxyI CCTNAGG 1 cut(s) 87
BanII GRGCYC 1 cut(s) 234
BbsI GAAGAC 3 cut(s) 45, 249, 1107
Bbv12I GWGCWC 2 cut(s) 234, 862
BbvI GCAGC 4 cut(s) 225, 235, 262, 1146
BccI CCATC 3 cut(s) 311, 679, 1168
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BciT130I CCWGG 2 cut(s) 564, 855
BcoDI GTCTC 1 cut(s) 274
BfmI CTRYAG 3 cut(s) 249, 918, 1164
BfoI RGCGCY 1 cut(s) 211
BglII AGATCT 1 cut(s) 809
Bme1390I CCNGG 2 cut(s) 564, 855
Bme18I GGWCC 1 cut(s) 175
BmeT110I CYCGRG 1 cut(s) 180
BmgT120I GGNCC 3 cut(s) 152, 175, 183
BmiI GGNNCC 3 cut(s) 83, 177, 780
BmrFI CCNGG 2 cut(s) 564, 855
BmsI GCATC 4 cut(s) 364, 412, 661, 934
BpiI GAAGAC 3 cut(s) 45, 249, 1107
BpmI CTGGAG 1 cut(s) 876
Bpu14I TTCGAA 2 cut(s) 36, 325
BpuEI CTTGAG 1 cut(s) 913
BsaJI CCNNGG 1 cut(s) 179
BsaXI ACNNNNNCTCC 8 cut(s) 32, 62, 558, 588, 614, 644, 818, 848
Bsc4I CCNNNNNNNGG 2 cut(s) 998, 1166
Bse1I ACTGG 3 cut(s) 658, 900, 1225
Bse21I CCTNAGG 1 cut(s) 87
BseBI CCWGG 2 cut(s) 564, 855
BseDI CCNNGG 1 cut(s) 179
BseGI GGATG 3 cut(s) 322, 427, 896
BseLI CCNNNNNNNGG 2 cut(s) 998, 1166
BseMII CTCAG 2 cut(s) 219, 274
BseNI ACTGG 3 cut(s) 658, 900, 1225
BseXI GCAGC 4 cut(s) 225, 235, 262, 1146
BshFI GGCC 4 cut(s) 106, 146, 154, 185
BsiHKAI GWGCWC 2 cut(s) 234, 862
BsiHKCI CYCGRG 1 cut(s) 180
BsiSI CCGG 6 cut(s) 51, 62, 107, 161, 462, 878
BslFI GGGAC 1 cut(s) 12
BslI CCNNNNNNNGG 2 cut(s) 998, 1166
BsmAI GTCTC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 12
BsnI GGCC 4 cut(s) 106, 146, 154, 185
BsoBI CYCGRG 1 cut(s) 180
Bsp119I TTCGAA 2 cut(s) 36, 325
Bsp1286I GDGCHC 2 cut(s) 234, 862
Bsp143I GATC 1 cut(s) 809
BspACI CCGC 6 cut(s) 119, 164, 167, 186, 189, 211
BspANI GGCC 4 cut(s) 106, 146, 154, 185
BspCNI CTCAG 2 cut(s) 220, 273
BspHI TCATGA 1 cut(s) 712
BspLI GGNNCC 3 cut(s) 83, 177, 780
BspMAI CTGCAG 1 cut(s) 253
BspQI GCTCTTC 1 cut(s) 239
BspT104I TTCGAA 2 cut(s) 36, 325
BsrI ACTGG 3 cut(s) 658, 900, 1225
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 1 cut(s) 809
Bst2UI CCWGG 2 cut(s) 564, 855
Bst4CI ACNGT 5 cut(s) 574, 695, 919, 1047, 1258
Bst6I CTCTTC 2 cut(s) 239, 871
BstBI TTCGAA 2 cut(s) 36, 325
BstC8I GCNNGC 2 cut(s) 201, 253
BstDEI CTNAG 3 cut(s) 87, 228, 260
BstENI CCTNNNNNAGG 1 cut(s) 996
BstF5I GGATG 3 cut(s) 322, 427, 896
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 2 cut(s) 67, 210
BstKTI GATC 1 cut(s) 812
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 1 cut(s) 809
BstMWI GCNNNNNNNGC 2 cut(s) 205, 261
BstNI CCWGG 2 cut(s) 564, 855
BstNSI RCATGY 1 cut(s) 980
BstSCI CCNGG 2 cut(s) 562, 853
BstSFI CTRYAG 3 cut(s) 249, 918, 1164
BstV1I GCAGC 4 cut(s) 225, 235, 262, 1146
BstV2I GAAGAC 3 cut(s) 45, 249, 1107
BstX2I RGATCY 1 cut(s) 809
BstXI CCANNNNNNTGG 1 cut(s) 139
BstYI RGATCY 1 cut(s) 809
Bsu36I CCTNAGG 1 cut(s) 87
BsuRI GGCC 4 cut(s) 106, 146, 154, 185
BtgZI GCGATG 1 cut(s) 279
BtsCI GGATG 3 cut(s) 322, 427, 896
BtsIMutI CAGTG 3 cut(s) 237, 915, 1254
Cac8I GCNNGC 2 cut(s) 201, 253
CciI TCATGA 1 cut(s) 712
CfoI GCGC 2 cut(s) 67, 210
Cfr13I GGNCC 3 cut(s) 152, 175, 183
CseI GACGC 2 cut(s) 254, 1024
Csp6I GTAC 2 cut(s) 1123, 1201
CviAII CATG 5 cut(s) 426, 676, 713, 823, 977
CviQI GTAC 2 cut(s) 1123, 1201
DdeI CTNAG 3 cut(s) 87, 228, 260
DpnI GATC 1 cut(s) 811
DpnII GATC 1 cut(s) 809
Eam1104I CTCTTC 2 cut(s) 239, 871
EarI CTCTTC 2 cut(s) 239, 871
Ecl136II GAGCTC 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 4 cut(s) 261, 300, 687, 1017
Eco81I CCTNAGG 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 180
EcoICRI GAGCTC 1 cut(s) 232
EcoNI CCTNNNNNAGG 1 cut(s) 996
EcoRII CCWGG 2 cut(s) 562, 853
EcoT22I ATGCAT 2 cut(s) 427, 949
EcoT38I GRGCYC 1 cut(s) 234
FaeI CATG 5 cut(s) 429, 679, 716, 826, 980
FaqI GGGAC 1 cut(s) 12
FatI CATG 5 cut(s) 425, 675, 712, 822, 976
FokI GGATG 3 cut(s) 329, 434, 883
FriOI GRGCYC 1 cut(s) 234
GlaI GCGC 2 cut(s) 66, 209
GsuI CTGGAG 1 cut(s) 876
HaeII RGCGCY 1 cut(s) 211
HaeIII GGCC 4 cut(s) 106, 146, 154, 185
HapII CCGG 6 cut(s) 51, 62, 107, 161, 462, 878
HgaI GACGC 2 cut(s) 254, 1024
HhaI GCGC 2 cut(s) 67, 210
Hin1II CATG 5 cut(s) 429, 679, 716, 826, 980
Hin6I GCGC 2 cut(s) 65, 208
HinP1I GCGC 2 cut(s) 65, 208
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HinfI GANTC 7 cut(s) 157, 322, 698, 833, 1112, 1170, 1237
HpaI GTTAAC 1 cut(s) 663
HpaII CCGG 6 cut(s) 51, 62, 107, 161, 462, 878
HphI GGTGA 4 cut(s) 707, 950, 1035, 1232
Hpy166II GTNNAC 1 cut(s) 663
Hpy188I TCNGA 6 cut(s) 15, 517, 841, 997, 1018, 1075
Hpy188III TCNNGA 2 cut(s) 713, 803
Hpy8I GTNNAC 1 cut(s) 663
Hpy99I CGWCG 1 cut(s) 175
HpyCH4III ACNGT 5 cut(s) 574, 695, 919, 1047, 1258
HpyCH4IV ACGT 2 cut(s) 25, 541
HpyCH4V TGCA 9 cut(s) 251, 377, 425, 797, 911, 947, 962, 980, 1090
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 261
HpyF3I CTNAG 3 cut(s) 87, 228, 260
HpySE526I ACGT 2 cut(s) 25, 541
Hsp92II CATG 5 cut(s) 429, 679, 716, 826, 980
HspAI GCGC 2 cut(s) 65, 208
KspAI GTTAAC 1 cut(s) 663
Kzo9I GATC 1 cut(s) 809
LguI GCTCTTC 1 cut(s) 239
LmnI GCTCC 2 cut(s) 53, 857
Lsp1109I GCAGC 4 cut(s) 225, 235, 262, 1146
LweI GCATC 4 cut(s) 364, 412, 661, 934
MaeII ACGT 2 cut(s) 25, 541
MaeIII GTNAC 4 cut(s) 283, 448, 478, 844
MalI GATC 1 cut(s) 811
MboI GATC 1 cut(s) 809
MfeI CAATTG 1 cut(s) 981
MflI RGATCY 1 cut(s) 809
MhlI GDGCHC 2 cut(s) 234, 862
MluCI AATT 5 cut(s) 16, 385, 981, 1024, 1066
MlyI GAGTC 4 cut(s) 151, 842, 1121, 1164
Mph1103I ATGCAT 2 cut(s) 427, 949
MroXI GAANNNNTTC 1 cut(s) 573
MseI TTAA 1 cut(s) 662
MslI CAYNNNNRTG 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 6 cut(s) 51, 62, 107, 161, 462, 878
MspR9I CCNGG 2 cut(s) 564, 855
MunI CAATTG 1 cut(s) 981
MvaI CCWGG 2 cut(s) 564, 855
MwoI GCNNNNNNNGC 2 cut(s) 205, 261
NdeII GATC 1 cut(s) 809
NlaIII CATG 5 cut(s) 429, 679, 716, 826, 980
NlaIV GGNNCC 3 cut(s) 83, 177, 780
NmeAIII GCCGAG 1 cut(s) 798
NsiI ATGCAT 2 cut(s) 427, 949
NspI RCATGY 1 cut(s) 980
NspV TTCGAA 2 cut(s) 36, 325
PagI TCATGA 1 cut(s) 712
PciSI GCTCTTC 1 cut(s) 239
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PdmI GAANNNNTTC 1 cut(s) 573
PfeI GAWTC 3 cut(s) 322, 698, 1237
PfoI TCCNGGA 1 cut(s) 853
PleI GAGTC 4 cut(s) 151, 841, 1120, 1164
PpsI GAGTC 4 cut(s) 151, 841, 1120, 1164
Psp124BI GAGCTC 1 cut(s) 234
Psp6I CCWGG 2 cut(s) 562, 853
PspGI CCWGG 2 cut(s) 562, 853
PspN4I GGNNCC 3 cut(s) 83, 177, 780
PspPI GGNCC 3 cut(s) 152, 175, 183
PstI CTGCAG 1 cut(s) 253
PsuI RGATCY 1 cut(s) 809
PvuII CAGCTG 1 cut(s) 635
RsaI GTAC 2 cut(s) 1124, 1202
RsaNI GTAC 2 cut(s) 1123, 1201
RseI CAYNNNNRTG 1 cut(s) 137
SacI GAGCTC 1 cut(s) 234
SapI GCTCTTC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 662
Sau3AI GATC 1 cut(s) 809
Sau96I GGNCC 3 cut(s) 152, 175, 183
SchI GAGTC 4 cut(s) 151, 842, 1121, 1164
ScrFI CCNGG 2 cut(s) 564, 855
SduI GDGCHC 2 cut(s) 234, 862
SfaNI GCATC 4 cut(s) 364, 412, 661, 934
SfcI CTRYAG 3 cut(s) 249, 918, 1164
SfuI TTCGAA 2 cut(s) 36, 325
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 928
SmoI CTYRAG 1 cut(s) 928
Sse9I AATT 5 cut(s) 16, 385, 981, 1024, 1066
SsiI CCGC 6 cut(s) 119, 164, 167, 186, 189, 211
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 2 cut(s) 562, 853
TaaI ACNGT 5 cut(s) 574, 695, 919, 1047, 1258
TaiI ACGT 2 cut(s) 28, 544
TaqI TCGA 2 cut(s) 36, 325
TasI AATT 5 cut(s) 16, 385, 981, 1024, 1066
TauI GCSGC 6 cut(s) 122, 167, 170, 188, 191, 213
TfiI GAWTC 3 cut(s) 322, 698, 1237
Tru1I TTAA 1 cut(s) 662
Tru9I TTAA 1 cut(s) 662
TscAI CASTG 3 cut(s) 244, 922, 1261
TseI GCWGC 4 cut(s) 213, 248, 275, 1134
TspDTI ATGAA 5 cut(s) 129, 426, 692, 987, 1176
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 3 cut(s) 244, 922, 1261
VpaK11BI GGWCC 1 cut(s) 175
XagI CCTNNNNNAGG 1 cut(s) 996
XapI RAATTY 2 cut(s) 16, 385
XceI RCATGY 1 cut(s) 980
XcmI CCANNNNNNNNNTGG 1 cut(s) 682
XmnI GAANNNNTTC 1 cut(s) 573
Zsp2I ATGCAT 2 cut(s) 427, 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.