pycom06g10740

Zinc finger HIT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0005386
Physical Location & Seq
Forward (+)
16014252 .. 16016631
2380 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1254 bp
ATGGCGGAATCCATCATTACCTCAGAAAAACCCTCCACCTCGTCCCCTCTAGAGCCTCCTTCCCGTATCGTCTGCCACGTCTGCCAGAAGCAATTTTCTCAGTACACATGCCCTCGATGCAACTCACGTTACTGTTCCCTGCACTGCTACAAGTCGCATAATCTCCGGTGTACCGAATCGTTTATGCGGGAGAATGTGGTGGGGGAGATGGGGCAATTGGGGCCCGATGACGAAACTAAACAGAAAATGCTGGACATACTGAAACGATTTCACTCTGAAGAAGAAGAAACTGATGACATGGATGATGATGATGATGATAATGCTGCAGGTTCTGCACTGTCTGAGGAGACTATTCAAAAAGTGCTGTCTGGTGGTGAAGTTAGTCTGGATGATCTATCTACAGAAGAGAAGAAACTATTCCAAAGAGCTGTCGTTTCTGGGGAACTTAGCAAGATGATTAAGCCTTGGGATCCGTGGTGGTTGAAGCCTTCTGCCAGAACAATATCATTTAGCAAGGAAGGATCCCAACTTATCCAACCTCTTGTCAAAGACGATGAATCAATGTCACCTGAGGATAATTCAGAGAGCAATCAAGCGAGTGAGATTCCACCCGGGCCTGACACCCCACTGCCACCAGTCAGCAAGCTGAGTTCCACAAAGCCATCACCGTCCTTAGCTGTTCATCTGGTGGACATCATATACAGCTACTGTTTCACACTCCGTTTCTACAATGGAGATTGGAAATCGGATGCCATAGGATCATCCATGGCGGTGCTTTCTGTCTCCAATGTACTGGGCCAGGGTGGGCAACCGGAGACTGTCCTGGAAGTGCTGTCTTATTGCTTGGAAAAGACCTGCTCCCCAGACTTCAAACATACAGGCGGCTTGCAATTTGGACTCGGTCTCATAGATGATGTAACAAGCCTATTAACGCTAGGAACACCTGCTTTGTTGTGCTTGCTCTGTGATCTGCAGAGGATGGTTCAGGCTGGGGAGAGGGATCTGAAGTCGGAGAAACCACGGAAGTCGTCACGAAGAACAGAAATTAGGAACAAGCTGAAGTTGGCCGAACGGAAAATTTATTTCATCATGTGTTGGGTGCACGAGCAAACCGGGGAAGTTTGGACTTCCTTAGCAGCCATTGTAACGGCCGAAAAGAGTTCAGCTCTGAGTTATCAATCGGCTTCGAGGCCCGGGAAAGCGGAGAAGAAAGCCGAACCAAAGAGCAAGGTTTTGATTCAGGAGATTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SHQ1 zf-HIT

Protein Analysis

418

Amino Acids

46.36

Weight (kDa)

5.27

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-HIT PF04438 22 - 51 2e-10 HIT zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 952
Acc36I ACCTGC 3 cut(s) 317, 863, 952
AciI CCGC 5 cut(s) 5, 187, 770, 882, 1202
AclWI GGATC 6 cut(s) 464, 477, 516, 529, 766, 1008
AcoI YGGCCR 2 cut(s) 1065, 1149
AcsI RAATTY 1 cut(s) 1077
AcuI CTGAAG 3 cut(s) 297, 1025, 1079
AfaI GTAC 3 cut(s) 104, 172, 792
AgsI TTSAA 3 cut(s) 356, 484, 871
AjiI CACGTC 1 cut(s) 79
AjnI CCWGG 2 cut(s) 798, 822
AluBI AGCT 6 cut(s) 428, 646, 677, 705, 1057, 1166
AluI AGCT 6 cut(s) 428, 646, 677, 705, 1057, 1166
Alw21I GWGCWC 1 cut(s) 1104
Alw26I GTCTC 4 cut(s) 341, 787, 809, 908
Alw44I GTGCAC 1 cut(s) 1100
AlwI GGATC 6 cut(s) 464, 477, 516, 529, 766, 1008
AlwNI CAGNNNCTG 2 cut(s) 332, 708
Ama87I CYCGRG 2 cut(s) 611, 1193
AoxI GGCC 6 cut(s) 221, 614, 796, 1065, 1149, 1190
ApaI GGGCCC 1 cut(s) 225
ApaLI GTGCAC 1 cut(s) 1100
ApeKI GCWGC 2 cut(s) 323, 1136
ApoI RAATTY 1 cut(s) 1077
Asp700I GAANNNNTTC 1 cut(s) 416
AspS9I GGNCC 5 cut(s) 221, 222, 614, 796, 1191
AsuC2I CCSGG 5 cut(s) 612, 613, 1114, 1194, 1195
AsuHPI GGTGA 3 cut(s) 386, 558, 657
AvaI CYCGRG 2 cut(s) 611, 1193
AxyI CCTNAGG 1 cut(s) 570
BaeGI GKGCMC 2 cut(s) 225, 1104
BamHI GGATCC 2 cut(s) 469, 521
BanII GRGCYC 1 cut(s) 225
BauI CACGAG 1 cut(s) 1103
Bbv12I GWGCWC 1 cut(s) 1104
BbvI GCAGC 2 cut(s) 310, 1148
BccI CCATC 4 cut(s) 20, 202, 670, 973
BceAI ACGGC 1 cut(s) 1164
BciT130I CCWGG 2 cut(s) 800, 824
BcnI CCSGG 5 cut(s) 612, 613, 1114, 1194, 1195
BcoDI GTCTC 4 cut(s) 341, 787, 809, 908
BfaI CTAG 2 cut(s) 50, 935
BfmI CTRYAG 3 cut(s) 324, 399, 971
BfuAI ACCTGC 3 cut(s) 317, 863, 952
BisI GCNGC 3 cut(s) 324, 883, 1137
BlsI GCNGC 3 cut(s) 325, 884, 1138
Bme1390I CCNGG 7 cut(s) 612, 613, 800, 824, 1114, 1194, 1195
BmeT110I CYCGRG 2 cut(s) 611, 1193
BmgBI CACGTC 1 cut(s) 79
BmgT120I GGNCC 5 cut(s) 221, 222, 614, 796, 1191
BmiI GGNNCC 4 cut(s) 222, 223, 471, 523
BmrFI CCNGG 7 cut(s) 612, 613, 800, 824, 1114, 1194, 1195
BmrI ACTGGG 1 cut(s) 803
BmsI GCATC 2 cut(s) 107, 739
BmuI ACTGGG 1 cut(s) 803
BplI GAGNNNNNCTC 2 cut(s) 1150, 1182
Bpu10I CCTNAGC 2 cut(s) 673, 1132
BpuMI CCSGG 5 cut(s) 612, 613, 1114, 1194, 1195
BsaI GGTCTC 1 cut(s) 908
BsaJI CCNNGG 8 cut(s) 464, 473, 611, 765, 799, 1019, 1113, 1193
BsaWI WCCGGW 2 cut(s) 165, 811
Bse1I ACTGG 2 cut(s) 635, 798
Bse21I CCTNAGG 1 cut(s) 570
BseBI CCWGG 2 cut(s) 800, 824
BseDI CCNNGG 8 cut(s) 464, 473, 611, 765, 799, 1019, 1113, 1193
BseGI GGATG 5 cut(s) 307, 394, 754, 761, 984
BseMII CTCAG 6 cut(s) 36, 113, 333, 561, 638, 1160
BseNI ACTGG 2 cut(s) 635, 798
BseRI GAGGAG 1 cut(s) 359
BseSI GKGCMC 2 cut(s) 225, 1104
BseX3I CGGCCG 1 cut(s) 1149
BseXI GCAGC 2 cut(s) 310, 1148
BseYI CCCAGC 1 cut(s) 989
BsgI GTGCAG 2 cut(s) 125, 318
Bsh1285I CGRYCG 1 cut(s) 1152
BshFI GGCC 6 cut(s) 223, 616, 798, 1067, 1151, 1192
BsiEI CGRYCG 1 cut(s) 1152
BsiHKAI GWGCWC 1 cut(s) 1104
BsiHKCI CYCGRG 2 cut(s) 611, 1193
BsiSI CCGG 5 cut(s) 166, 612, 812, 1113, 1194
BslFI GGGAC 1 cut(s) 28
BsmAI GTCTC 4 cut(s) 341, 787, 809, 908
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 6 cut(s) 223, 616, 798, 1067, 1151, 1192
Bso31I GGTCTC 1 cut(s) 908
BsoBI CYCGRG 2 cut(s) 611, 1193
Bsp120I GGGCCC 1 cut(s) 221
Bsp1286I GDGCHC 2 cut(s) 225, 1104
Bsp143I GATC 6 cut(s) 391, 469, 521, 758, 967, 1000
Bsp19I CCATGG 1 cut(s) 765
BspACI CCGC 5 cut(s) 5, 187, 770, 882, 1202
BspANI GGCC 6 cut(s) 223, 616, 798, 1067, 1151, 1192
BspCNI CTCAG 6 cut(s) 35, 112, 334, 562, 639, 1161
BspLI GGNNCC 4 cut(s) 222, 223, 471, 523
BspMAI CTGCAG 2 cut(s) 328, 975
BspMI ACCTGC 3 cut(s) 317, 863, 952
BspPI GGATC 6 cut(s) 464, 477, 516, 529, 766, 1008
BspTNI GGTCTC 1 cut(s) 908
BsrI ACTGG 2 cut(s) 635, 798
BssECI CCNNGG 8 cut(s) 464, 473, 611, 765, 799, 1019, 1113, 1193
BssMI GATC 6 cut(s) 391, 469, 521, 758, 967, 1000
BssSI CACGAG 1 cut(s) 1103
BssT1I CCWWGG 2 cut(s) 464, 765
Bst2BI CACGAG 1 cut(s) 1103
Bst2UI CCWGG 2 cut(s) 800, 824
Bst4CI ACNGT 5 cut(s) 134, 339, 669, 710, 820
Bst6I CTCTTC 1 cut(s) 399
BstAPI GCANNNNNTGC 1 cut(s) 332
BstC8I GCNNGC 3 cut(s) 644, 887, 959
BstDEI CTNAG 9 cut(s) 22, 99, 342, 446, 570, 647, 673, 1132, 1169
BstDSI CCRYGG 3 cut(s) 473, 765, 1019
BstF5I GGATG 5 cut(s) 307, 394, 754, 761, 984
BstKTI GATC 6 cut(s) 394, 472, 524, 761, 970, 1003
BstMAI GTCTC 4 cut(s) 341, 787, 809, 908
BstMBI GATC 6 cut(s) 391, 469, 521, 758, 967, 1000
BstMCI CGRYCG 1 cut(s) 1152
BstMWI GCNNNNNNNGC 4 cut(s) 81, 117, 220, 332
BstNI CCWGG 2 cut(s) 800, 824
BstNSI RCATGY 1 cut(s) 111
BstSCI CCNGG 7 cut(s) 610, 611, 798, 822, 1112, 1192, 1193
BstSFI CTRYAG 3 cut(s) 324, 399, 971
BstSLI GKGCMC 2 cut(s) 225, 1104
BstV1I GCAGC 2 cut(s) 310, 1148
BstX2I RGATCY 3 cut(s) 469, 521, 1000
BstXI CCANNNNNNTGG 1 cut(s) 793
BstYI RGATCY 3 cut(s) 469, 521, 1000
BstZI CGGCCG 1 cut(s) 1149
Bsu36I CCTNAGG 1 cut(s) 570
BsuRI GGCC 6 cut(s) 223, 616, 798, 1067, 1151, 1192
BtgI CCRYGG 3 cut(s) 473, 765, 1019
BtrI CACGTC 1 cut(s) 79
BtsCI GGATG 5 cut(s) 307, 394, 754, 761, 984
BtsI GCAGTG 2 cut(s) 142, 626
BtsIMutI CAGTG 3 cut(s) 142, 335, 626
BveI ACCTGC 3 cut(s) 317, 863, 952
Cac8I GCNNGC 3 cut(s) 644, 887, 959
CaiI CAGNNNCTG 2 cut(s) 332, 708
Cfr13I GGNCC 5 cut(s) 221, 222, 614, 796, 1191
Cfr9I CCCGGG 2 cut(s) 611, 1193
Csp6I GTAC 3 cut(s) 103, 171, 791
CviAII CATG 4 cut(s) 108, 298, 766, 1090
CviQI GTAC 3 cut(s) 103, 171, 791
DdeI CTNAG 9 cut(s) 22, 99, 342, 446, 570, 647, 673, 1132, 1169
DpnI GATC 6 cut(s) 393, 471, 523, 760, 969, 1002
DpnII GATC 6 cut(s) 391, 469, 521, 758, 967, 1000
EaeI YGGCCR 2 cut(s) 1065, 1149
EagI CGGCCG 1 cut(s) 1149
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
EciI GGCGGA 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 1149
Eco130I CCWWGG 2 cut(s) 464, 765
Eco24I GRGCYC 1 cut(s) 225
Eco31I GGTCTC 1 cut(s) 908
Eco52I CGGCCG 1 cut(s) 1149
Eco57I CTGAAG 3 cut(s) 297, 1025, 1079
Eco81I CCTNAGG 1 cut(s) 570
Eco88I CYCGRG 2 cut(s) 611, 1193
EcoO109I RGGNCCY 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 798, 822
EcoT14I CCWWGG 2 cut(s) 464, 765
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 2 cut(s) 464, 765
FaeI CATG 4 cut(s) 111, 301, 769, 1093
FaqI GGGAC 1 cut(s) 28
FatI CATG 4 cut(s) 107, 297, 765, 1089
FauI CCCGC 1 cut(s) 180
Fnu4HI GCNGC 3 cut(s) 324, 883, 1137
FokI GGATG 5 cut(s) 314, 401, 748, 761, 991
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 3 cut(s) 324, 883, 1137
FspBI CTAG 2 cut(s) 50, 935
GluI GCNGC 3 cut(s) 324, 883, 1137
GsaI CCCAGC 1 cut(s) 993
HaeIII GGCC 6 cut(s) 223, 616, 798, 1067, 1151, 1192
HapII CCGG 5 cut(s) 166, 612, 812, 1113, 1194
Hin1II CATG 4 cut(s) 111, 301, 769, 1093
HinfI GANTC 6 cut(s) 8, 176, 557, 604, 897, 1237
HpaII CCGG 5 cut(s) 166, 612, 812, 1113, 1194
HphI GGTGA 3 cut(s) 386, 558, 657
Hpy166II GTNNAC 4 cut(s) 105, 171, 691, 1102
Hpy188I TCNGA 8 cut(s) 25, 277, 343, 583, 748, 1005, 1012, 1170
Hpy188III TCNNGA 4 cut(s) 50, 386, 1032, 1241
Hpy8I GTNNAC 4 cut(s) 105, 171, 691, 1102
HpyAV CCTTC 3 cut(s) 69, 498, 512
HpyCH4III ACNGT 5 cut(s) 134, 339, 669, 710, 820
HpyCH4IV ACGT 2 cut(s) 78, 127
HpyCH4V TGCA 7 cut(s) 120, 142, 326, 335, 889, 973, 1102
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 117, 220, 332
HpyF3I CTNAG 9 cut(s) 22, 99, 342, 446, 570, 647, 673, 1132, 1169
HpySE526I ACGT 2 cut(s) 78, 127
Hsp92II CATG 4 cut(s) 111, 301, 769, 1093
Kzo9I GATC 6 cut(s) 391, 469, 521, 758, 967, 1000
LmnI GCTCC 1 cut(s) 863
Lsp1109I GCAGC 2 cut(s) 310, 1148
LweI GCATC 2 cut(s) 107, 739
MaeI CTAG 2 cut(s) 50, 935
MaeII ACGT 2 cut(s) 78, 127
MaeIII GTNAC 5 cut(s) 128, 564, 916, 1029, 1144
MalI GATC 6 cut(s) 393, 471, 523, 760, 969, 1002
MboI GATC 6 cut(s) 391, 469, 521, 758, 967, 1000
MboII GAAGA 7 cut(s) 290, 293, 296, 416, 421, 1047, 1219
MfeI CAATTG 1 cut(s) 215
MflI RGATCY 3 cut(s) 469, 521, 1000
MhlI GDGCHC 2 cut(s) 225, 1104
MluCI AATT 6 cut(s) 92, 215, 577, 890, 1044, 1077
MlyI GAGTC 1 cut(s) 891
MmeI TCCRAC 2 cut(s) 559, 990
MroXI GAANNNNTTC 1 cut(s) 416
MseI TTAA 2 cut(s) 459, 929
MslI CAYNNNNRTG 1 cut(s) 770
MspI CCGG 5 cut(s) 166, 612, 812, 1113, 1194
MspR9I CCNGG 7 cut(s) 612, 613, 800, 824, 1114, 1194, 1195
MunI CAATTG 1 cut(s) 215
MvaI CCWGG 2 cut(s) 800, 824
MwoI GCNNNNNNNGC 4 cut(s) 81, 117, 220, 332
NciI CCSGG 5 cut(s) 612, 613, 1114, 1194, 1195
NcoI CCATGG 1 cut(s) 765
NdeII GATC 6 cut(s) 391, 469, 521, 758, 967, 1000
NlaIII CATG 4 cut(s) 111, 301, 769, 1093
NlaIV GGNNCC 4 cut(s) 222, 223, 471, 523
NmuCI GTSAC 2 cut(s) 564, 1029
NspI RCATGY 1 cut(s) 111
PaqCI CACCTGC 1 cut(s) 952
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 5 cut(s) 8, 176, 557, 604, 1237
PflFI GACNNNGTC 1 cut(s) 900
PfoI TCCNGGA 1 cut(s) 822
PkrI GCNGC 3 cut(s) 325, 884, 1138
PleI GAGTC 1 cut(s) 891
PpsI GAGTC 1 cut(s) 891
Psp6I CCWGG 2 cut(s) 798, 822
PspFI CCCAGC 1 cut(s) 989
PspGI CCWGG 2 cut(s) 798, 822
PspN4I GGNNCC 4 cut(s) 222, 223, 471, 523
PspOMI GGGCCC 1 cut(s) 221
PspPI GGNCC 5 cut(s) 221, 222, 614, 796, 1191
PstI CTGCAG 2 cut(s) 328, 975
PstNI CAGNNNCTG 2 cut(s) 332, 708
PsuI RGATCY 3 cut(s) 469, 521, 1000
PsyI GACNNNGTC 1 cut(s) 900
RsaI GTAC 3 cut(s) 104, 172, 792
RsaNI GTAC 3 cut(s) 103, 171, 791
RseI CAYNNNNRTG 1 cut(s) 770
SaqAI TTAA 2 cut(s) 459, 929
SatI GCNGC 3 cut(s) 324, 883, 1137
Sau3AI GATC 6 cut(s) 391, 469, 521, 758, 967, 1000
Sau96I GGNCC 5 cut(s) 221, 222, 614, 796, 1191
SchI GAGTC 1 cut(s) 891
ScrFI CCNGG 7 cut(s) 612, 613, 800, 824, 1114, 1194, 1195
SduI GDGCHC 2 cut(s) 225, 1104
SfaNI GCATC 2 cut(s) 107, 739
SfcI CTRYAG 3 cut(s) 324, 399, 971
SmaI CCCGGG 2 cut(s) 613, 1195
SmiMI CAYNNNNRTG 1 cut(s) 770
Sse9I AATT 6 cut(s) 92, 215, 577, 890, 1044, 1077
SsiI CCGC 5 cut(s) 5, 187, 770, 882, 1202
SspMI CTAG 2 cut(s) 50, 935
StyD4I CCNGG 7 cut(s) 610, 611, 798, 822, 1112, 1192, 1193
StyI CCWWGG 2 cut(s) 464, 765
TaaI ACNGT 5 cut(s) 134, 339, 669, 710, 820
TaiI ACGT 2 cut(s) 81, 130
TaqI TCGA 2 cut(s) 115, 1187
TaqII GACCGA 1 cut(s) 890
TasI AATT 6 cut(s) 92, 215, 577, 890, 1044, 1077
TatI WGTACW 2 cut(s) 102, 790
TauI GCSGC 1 cut(s) 885
TfiI GAWTC 5 cut(s) 8, 176, 557, 604, 1237
Tru1I TTAA 2 cut(s) 459, 929
Tru9I TTAA 2 cut(s) 459, 929
TscAI CASTG 3 cut(s) 149, 342, 633
TseFI GTSAC 2 cut(s) 564, 1029
TseI GCWGC 2 cut(s) 323, 1136
Tsp45I GTSAC 2 cut(s) 564, 1029
TspDTI ATGAA 3 cut(s) 570, 671, 1075
TspGWI ACGGA 4 cut(s) 462, 710, 1036, 1087
TspMI CCCGGG 2 cut(s) 611, 1193
TspRI CASTG 3 cut(s) 149, 342, 633
Tth111I GACNNNGTC 1 cut(s) 900
VneI GTGCAC 1 cut(s) 1100
XapI RAATTY 1 cut(s) 1077
XbaI TCTAGA 1 cut(s) 49
XceI RCATGY 1 cut(s) 111
XmaI CCCGGG 2 cut(s) 611, 1193
XmnI GAANNNNTTC 1 cut(s) 416
XspI CTAG 2 cut(s) 50, 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.