pycom06g15990
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0003200
Physical Location & Seq
Reverse (-)
20454406 .. 20462572
8167 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1014 bp
ATGGTTGGTTCATGTGTGGCGCCCAATTCATTAAATACCGATCGGGGCCACAGACAAATCCAACGGGCCCATAAACGCCTATCACCATCTCTCTCACAACAAGAACAGAGCTTCTACAACAACAAAAAAATGCCGAAGACTCGCAAAAGAAAGCAGGTGGAGGCTGAGCAGAAGCCAAAATCCGCAACCAAATCAGCCAAAACCGCCAATCCCTTCAAAGCGACGGCAAAGGACCCGTACCCGAATCACCCCCGACCCACCCGAGAAGAATGCTTGTCCGTACGCGACGACCTCTTGGCCTTCCACGGCTTCCCGGAAGAATTCGCCGAGTACAGAAAGCAGAGACTGATGGCTCTTGAAACCGACGGCGCCATGAATTCAGAGCCGTTAGATCGGAAAGAGAGTGTTTTGGATGGGTTGGTGAGGACTCTGCTGTCGCAGAACACCACGGAAGTCAATTCCCAAAAGGCTTTTGCTTCTCTCAAATCAGCTTTTCCGACTTGGGAAGATGTTCTTGGTGCTGATTCAAATTCCATAGAGAATGCCATACGATGTGGAGGCCTAGCCAGGACTAAAACGTCGTGTATTAAGAACATGTTGAGGTGTTTACTGGAGAAGAAAGAAAAGTTGTGCTTGGAGTACTTGAGAGAGTTGTCAGTTGACGAAATTAAGTGCGAGCTATCTTGTTTCAAGGGAATCGGTCCCAAGACGGTGGCTTGTGTTTTGATGTTCCAGCTTCAGCAAGACGATTTTCCGGTGGACACGCATGTGTTCGAGATTGCAAAGGCTATTGGTTGGGTGCCAGCTGAAGCGGACAGGAATAAGACGTATCTTCATCTCAACCAATGGATCCCGAATGAACTCAAATTTGACCTCAACTGCCTTCTGTATACTCACGGCAAGCTCTGCCGCAAATGCATCAAGAAAGGGGATAGCCAGCAAGGTTTTATCACGCATATGGCAACTACATGGTCCATGCATTTCGGGTTAGTTTTTGTTCATTATTTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

338

Amino Acids

38.39

Weight (kDa)

9.04

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HhH-GPD PF00730 141 - 285 4.5e-13 HhH-GPD superfamily base excision DNA repair protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 145
AasI GACNNNNNNGTC 2 cut(s) 433, 577
Acc36I ACCTGC 1 cut(s) 145
AccB1I GGYRCC 3 cut(s) 19, 368, 799
AccI GTMKAC 1 cut(s) 890
AccII CGCG 1 cut(s) 285
AciI CCGC 4 cut(s) 183, 204, 812, 910
AclWI GGATC 2 cut(s) 844, 857
AcsI RAATTY 4 cut(s) 320, 376, 529, 866
AcuI CTGAAG 2 cut(s) 722, 828
AcyI GRCGYC 2 cut(s) 20, 369
AfaI GTAC 4 cut(s) 239, 282, 332, 641
AflIII ACRYGT 1 cut(s) 594
AgsI TTSAA 4 cut(s) 217, 359, 528, 691
AjnI CCWGG 1 cut(s) 566
AjuI GAANNNNNNNTTGG 2 cut(s) 498, 530
AleI CACNNNNGTG 1 cut(s) 767
AluBI AGCT 6 cut(s) 111, 491, 679, 736, 806, 904
AluI AGCT 6 cut(s) 111, 491, 679, 736, 806, 904
Alw26I GTCTC 1 cut(s) 337
AlwI GGATC 2 cut(s) 844, 857
AlwNI CAGNNNCTG 1 cut(s) 346
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 4 cut(s) 46, 66, 297, 559
ApaI GGGCCC 1 cut(s) 70
ApoI RAATTY 4 cut(s) 320, 376, 529, 866
Asp700I GAANNNNTTC 1 cut(s) 510
AspLEI GCGC 2 cut(s) 22, 371
AspS9I GGNCC 6 cut(s) 46, 66, 67, 232, 701, 972
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 3 cut(s) 75, 239, 433
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 3 cut(s) 232, 701, 972
BaeGI GKGCMC 1 cut(s) 70
BamHI GGATCC 1 cut(s) 849
BanI GGYRCC 3 cut(s) 19, 368, 799
BanII GRGCYC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 143
BccI CCATC 3 cut(s) 94, 343, 407
BceAI ACGGC 5 cut(s) 240, 322, 370, 382, 913
BcgI CGANNNNNNTGC 2 cut(s) 252, 286
BciT130I CCWGG 1 cut(s) 568
BcnI CCSGG 1 cut(s) 314
BcoDI GTCTC 1 cut(s) 337
BfaI CTAG 1 cut(s) 563
BfoI RGCGCY 2 cut(s) 23, 372
BfuAI ACCTGC 1 cut(s) 145
BisI GCNGC 1 cut(s) 910
BlpI GCTNAGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 911
BmcAI AGTACT 1 cut(s) 641
Bme1390I CCNGG 2 cut(s) 314, 568
Bme18I GGWCC 3 cut(s) 232, 701, 972
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 6 cut(s) 46, 66, 67, 232, 701, 972
BmiI GGNNCC 8 cut(s) 21, 47, 68, 234, 370, 703, 801, 851
BmrFI CCNGG 2 cut(s) 314, 568
BmsI GCATC 1 cut(s) 927
BpiI GAAGAC 1 cut(s) 143
BpmI CTGGAG 1 cut(s) 632
Bpu1102I GCTNAGC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 664
BpuMI CCSGG 1 cut(s) 314
BsaHI GRCGYC 2 cut(s) 20, 369
BsaJI CCNNGG 2 cut(s) 304, 447
BsaWI WCCGGW 1 cut(s) 754
Bse1I ACTGG 1 cut(s) 615
BseBI CCWGG 1 cut(s) 568
BseDI CCNNGG 2 cut(s) 304, 447
BseGI GGATG 1 cut(s) 418
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 615
BseSI GKGCMC 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 285
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 4 cut(s) 48, 68, 299, 561
BshNI GGYRCC 3 cut(s) 19, 368, 799
BsiEI CGRYCG 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 2 cut(s) 314, 755
BsiWI CGTACG 1 cut(s) 280
BslFI GGGAC 1 cut(s) 687
BsmAI GTCTC 1 cut(s) 337
BsmFI GGGAC 1 cut(s) 687
BsmI GAATGC 2 cut(s) 275, 547
BsnI GGCC 4 cut(s) 48, 68, 299, 561
BsoBI CYCGRG 1 cut(s) 261
Bsp120I GGGCCC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 3 cut(s) 40, 391, 849
Bsp1720I GCTNAGC 1 cut(s) 165
BspACI CCGC 4 cut(s) 183, 204, 812, 910
BspANI GGCC 4 cut(s) 48, 68, 299, 561
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 8 cut(s) 21, 47, 68, 234, 370, 703, 801, 851
BspMI ACCTGC 1 cut(s) 145
BspPI GGATC 2 cut(s) 844, 857
BspT107I GGYRCC 3 cut(s) 19, 368, 799
BsrI ACTGG 1 cut(s) 615
BssECI CCNNGG 2 cut(s) 304, 447
BssMI GATC 3 cut(s) 40, 391, 849
BssNAI GTATAC 1 cut(s) 891
BssNI GRCGYC 2 cut(s) 20, 369
Bst1107I GTATAC 1 cut(s) 891
Bst2UI CCWGG 1 cut(s) 568
Bst4CI ACNGT 1 cut(s) 712
BstACI GRCGYC 2 cut(s) 20, 369
BstAPI GCANNNNNTGC 1 cut(s) 906
BstC8I GCNNGC 4 cut(s) 677, 804, 902, 938
BstDEI CTNAG 1 cut(s) 165
BstDSI CCRYGG 2 cut(s) 304, 447
BstF5I GGATG 1 cut(s) 418
BstFNI CGCG 1 cut(s) 285
BstH2I RGCGCY 2 cut(s) 23, 372
BstHHI GCGC 2 cut(s) 22, 371
BstKTI GATC 3 cut(s) 43, 394, 852
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 3 cut(s) 40, 391, 849
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 3 cut(s) 203, 906, 915
BstNI CCWGG 1 cut(s) 568
BstNSI RCATGY 2 cut(s) 598, 770
BstSCI CCNGG 2 cut(s) 312, 566
BstSLI GKGCMC 1 cut(s) 70
BstUI CGCG 1 cut(s) 285
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 849
BstXI CCANNNNNNTGG 1 cut(s) 712
BstYI RGATCY 1 cut(s) 849
BstZ17I GTATAC 1 cut(s) 891
BsuRI GGCC 4 cut(s) 48, 68, 299, 561
BtgI CCRYGG 2 cut(s) 304, 447
BtsCI GGATG 1 cut(s) 418
BveI ACCTGC 1 cut(s) 145
Cac8I GCNNGC 4 cut(s) 677, 804, 902, 938
CaiI CAGNNNCTG 1 cut(s) 346
CfoI GCGC 2 cut(s) 22, 371
Cfr13I GGNCC 6 cut(s) 46, 66, 67, 232, 701, 972
Csp6I GTAC 4 cut(s) 238, 281, 331, 640
CviAII CATG 6 cut(s) 12, 373, 595, 767, 969, 976
CviQI GTAC 4 cut(s) 238, 281, 331, 640
DdeI CTNAG 1 cut(s) 165
DinI GGCGCC 2 cut(s) 21, 370
DpnI GATC 3 cut(s) 42, 393, 851
DpnII GATC 3 cut(s) 40, 391, 849
DrdI GACNNNNNNGTC 2 cut(s) 433, 577
DseDI GACNNNNNNGTC 2 cut(s) 433, 577
Eco147I AGGCCT 1 cut(s) 561
Eco24I GRGCYC 1 cut(s) 70
Eco47I GGWCC 3 cut(s) 232, 701, 972
Eco57I CTGAAG 2 cut(s) 722, 828
Eco88I CYCGRG 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 232
EcoRI GAATTC 2 cut(s) 320, 376
EcoRII CCWGG 1 cut(s) 566
EcoT22I ATGCAT 2 cut(s) 920, 981
EcoT38I GRGCYC 1 cut(s) 70
EgeI GGCGCC 2 cut(s) 21, 370
EheI GGCGCC 2 cut(s) 21, 370
FaeI CATG 6 cut(s) 15, 376, 598, 770, 972, 979
FalI AAGNNNNNCTT 4 cut(s) 498, 530, 617, 649
FaqI GGGAC 1 cut(s) 687
FatI CATG 6 cut(s) 11, 372, 594, 766, 968, 975
FauNDI CATATG 1 cut(s) 957
FblI GTMKAC 1 cut(s) 890
Fnu4HI GCNGC 1 cut(s) 910
FokI GGATG 1 cut(s) 425
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 910
FspBI CTAG 1 cut(s) 563
GlaI GCGC 2 cut(s) 21, 370
GluI GCNGC 1 cut(s) 910
GsuI CTGGAG 1 cut(s) 632
HaeII RGCGCY 2 cut(s) 23, 372
HaeIII GGCC 4 cut(s) 48, 68, 299, 561
HapII CCGG 2 cut(s) 314, 755
HhaI GCGC 2 cut(s) 22, 371
Hin1I GRCGYC 2 cut(s) 20, 369
Hin1II CATG 6 cut(s) 15, 376, 598, 770, 972, 979
Hin6I GCGC 2 cut(s) 20, 369
HinP1I GCGC 2 cut(s) 20, 369
HincII GTYRAC 1 cut(s) 661
HindII GTYRAC 1 cut(s) 661
HinfI GANTC 5 cut(s) 139, 244, 427, 524, 696
HpaII CCGG 2 cut(s) 314, 755
HphI GGTGA 3 cut(s) 75, 239, 433
Hpy166II GTNNAC 4 cut(s) 608, 661, 760, 891
Hpy188I TCNGA 3 cut(s) 382, 396, 498
Hpy188III TCNNGA 4 cut(s) 356, 775, 853, 922
Hpy8I GTNNAC 4 cut(s) 608, 661, 760, 891
Hpy99I CGWCG 4 cut(s) 226, 290, 368, 583
HpyAV CCTTC 3 cut(s) 223, 310, 893
HpyCH4III ACNGT 1 cut(s) 712
HpyCH4IV ACGT 2 cut(s) 578, 827
HpyCH4V TGCA 3 cut(s) 782, 918, 979
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 906, 915
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 2 cut(s) 578, 827
Hsp92I GRCGYC 2 cut(s) 20, 369
Hsp92II CATG 6 cut(s) 15, 376, 598, 770, 972, 979
HspAI GCGC 2 cut(s) 20, 369
KasI GGCGCC 2 cut(s) 19, 368
Kzo9I GATC 3 cut(s) 40, 391, 849
LweI GCATC 1 cut(s) 927
MaeI CTAG 1 cut(s) 563
MaeII ACGT 2 cut(s) 578, 827
MalI GATC 3 cut(s) 42, 393, 851
MboI GATC 3 cut(s) 40, 391, 849
MboII GAAGA 6 cut(s) 148, 278, 329, 518, 628, 824
MflI RGATCY 1 cut(s) 849
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 7 cut(s) 25, 320, 376, 457, 529, 666, 866
Mly113I GGCGCC 2 cut(s) 20, 369
MlyI GAGTC 2 cut(s) 133, 421
MmeI TCCRAC 2 cut(s) 85, 521
MnlI CCTC 6 cut(s) 154, 302, 417, 551, 594, 884
Mph1103I ATGCAT 2 cut(s) 920, 981
MroXI GAANNNNTTC 1 cut(s) 510
MseI TTAA 3 cut(s) 32, 588, 669
MslI CAYNNNNRTG 2 cut(s) 767, 956
MspA1I CMGCKG 1 cut(s) 806
MspI CCGG 2 cut(s) 314, 755
MspR9I CCNGG 2 cut(s) 314, 568
Mva1269I GAATGC 2 cut(s) 275, 547
MvaI CCWGG 1 cut(s) 568
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 3 cut(s) 203, 906, 915
NarI GGCGCC 2 cut(s) 20, 369
NciI CCSGG 1 cut(s) 314
NdeI CATATG 1 cut(s) 957
NdeII GATC 3 cut(s) 40, 391, 849
NlaIII CATG 6 cut(s) 15, 376, 598, 770, 972, 979
NlaIV GGNNCC 8 cut(s) 21, 47, 68, 234, 370, 703, 801, 851
NmeAIII GCCGAG 1 cut(s) 352
NsiI ATGCAT 2 cut(s) 920, 981
NspI RCATGY 2 cut(s) 598, 770
OliI CACNNNNGTG 1 cut(s) 767
PaqCI CACCTGC 1 cut(s) 145
PceI AGGCCT 1 cut(s) 561
PciI ACATGT 1 cut(s) 594
PctI GAATGC 2 cut(s) 275, 547
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 3 cut(s) 244, 524, 696
Pfl23II CGTACG 1 cut(s) 280
PfoI TCCNGGA 1 cut(s) 312
PkrI GCNGC 1 cut(s) 911
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 2 cut(s) 133, 421
PluTI GGCGCC 2 cut(s) 23, 372
PpsI GAGTC 2 cut(s) 133, 421
PpuMI RGGWCCY 1 cut(s) 232
PscI ACATGT 1 cut(s) 594
Psp5II RGGWCCY 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 566
PspGI CCWGG 1 cut(s) 566
PspLI CGTACG 1 cut(s) 280
PspN4I GGNNCC 8 cut(s) 21, 47, 68, 234, 370, 703, 801, 851
PspOMI GGGCCC 1 cut(s) 66
PspPI GGNCC 6 cut(s) 46, 66, 67, 232, 701, 972
PspPPI RGGWCCY 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 346
PsuI RGATCY 1 cut(s) 849
PvuI CGATCG 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 806
RsaI GTAC 4 cut(s) 239, 282, 332, 641
RsaNI GTAC 4 cut(s) 238, 281, 331, 640
RseI CAYNNNNRTG 2 cut(s) 767, 956
SaqAI TTAA 3 cut(s) 32, 588, 669
SatI GCNGC 1 cut(s) 910
Sau3AI GATC 3 cut(s) 40, 391, 849
Sau96I GGNCC 6 cut(s) 46, 66, 67, 232, 701, 972
ScaI AGTACT 1 cut(s) 641
SchI GAGTC 2 cut(s) 133, 421
ScrFI CCNGG 2 cut(s) 314, 568
SduI GDGCHC 1 cut(s) 70
SfaNI GCATC 1 cut(s) 927
SfoI GGCGCC 2 cut(s) 21, 370
SinI GGWCC 3 cut(s) 232, 701, 972
SmiMI CAYNNNNRTG 2 cut(s) 767, 956
SmlI CTYRAG 1 cut(s) 643
SmoI CTYRAG 1 cut(s) 643
Sse9I AATT 7 cut(s) 25, 320, 376, 457, 529, 666, 866
SseBI AGGCCT 1 cut(s) 561
SsiI CCGC 4 cut(s) 183, 204, 812, 910
SspDI GGCGCC 2 cut(s) 19, 368
SspMI CTAG 1 cut(s) 563
StuI AGGCCT 1 cut(s) 561
StyD4I CCNGG 2 cut(s) 312, 566
TaaI ACNGT 1 cut(s) 712
TaiI ACGT 2 cut(s) 581, 830
TaqI TCGA 1 cut(s) 774
TaqII GACCGA 1 cut(s) 689
TasI AATT 7 cut(s) 25, 320, 376, 457, 529, 666, 866
TatI WGTACW 2 cut(s) 330, 639
TauI GCSGC 1 cut(s) 912
TfiI GAWTC 3 cut(s) 244, 524, 696
Tru1I TTAA 3 cut(s) 32, 588, 669
Tru9I TTAA 3 cut(s) 32, 588, 669
TspDTI ATGAA 5 cut(s) 18, 389, 824, 873, 989
TspGWI ACGGA 2 cut(s) 268, 464
VpaK11BI GGWCC 3 cut(s) 232, 701, 972
XapI RAATTY 4 cut(s) 320, 376, 529, 866
XceI RCATGY 2 cut(s) 598, 770
XmiI GTMKAC 1 cut(s) 890
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 1 cut(s) 563
ZrmI AGTACT 1 cut(s) 641
Zsp2I ATGCAT 2 cut(s) 920, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.