pycom10g10090

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0004929
Physical Location & Seq
Forward (+)
13348581 .. 13350685
2105 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 843 bp
ATGTATTCTCCAACCTGTATTCAAGTCATTTCCGCCTGTTTTCTTACTTTAAAAGTCTTATTTAACCAAACAAATGACCTAAGGGATCTGGACTCCCCACTTTCGAATATACAAGATTATGAATTGAAAGTCCTTGAAGTTCGAGTAACTTGGGGCGCAAGTAATCGACTAAACACGATCTTGTTCTACATCTGCTATACTGAGATAGCGGTGGCACGCCCCACAAAGGCACCTTTCATAACTAACTTTGTCCTCTTCTTGCAACACATCAGCAAGCAAGAACCCGACTATACATCCAAAGTGCCAATCCCTTGGGGAGCTGTGCTGAGAGCCGAGGAGCTGTCTCCGGAGAAATCTTCGCCCGAACATCATAATGGTGGGATCTTTTCTTCCAAGGACTATCTGATGGTGTTGGGTTATGTTTATCCGGCTTATGAGTGCTATAAGACTCTGAAGAATAATAAGCCAGAGATCGAGCAACTTATACTTTGGTGCCAGTACTGGATACTAGTTGCCATGCTTACCGTATTGGAGAGAGTTGGGGATGCATTATTTGCATGGTTACCAATATACTGTGAAGTCAAATTGGCATTGTTTATATATCTCTGGTCTTCTAAAGTGAAAGGAACGAACTATCTTTACAATCACTTATTTCGGAATTTTGTTTCACAACATGAGTTAGAGATTGACAGTAAGATATTAGAATTTAGGGTTAAGACGGGAGATATTGCAAACTACTGTTGTCAAAAGGCTCTGAATTATGGCCACAAAGGTGTTTCTGAGATTTTTCAGTATGCGTCTTCTCATTCAGCGTCACAGCCTTGTCACGATCAGGCATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

281

Amino Acids

32.26

Weight (kDa)

6.44

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 143 - 221 2.1e-21 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 229, 492
AccIII TCCGGA 1 cut(s) 346
AciI CCGC 2 cut(s) 33, 209
AclWI GGATC 2 cut(s) 93, 389
AcoI YGGCCR 1 cut(s) 763
AcsI RAATTY 2 cut(s) 658, 704
AcuI CTGAAG 1 cut(s) 473
AfaI GTAC 1 cut(s) 500
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 3 cut(s) 23, 127, 137
AhlI ACTAGT 1 cut(s) 508
AleI CACNNNNGTG 1 cut(s) 771
AluBI AGCT 2 cut(s) 320, 340
AluI AGCT 2 cut(s) 320, 340
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 2 cut(s) 93, 389
Aor13HI TCCGGA 1 cut(s) 346
AoxI GGCC 1 cut(s) 763
ApoI RAATTY 2 cut(s) 658, 704
AspLEI GCGC 1 cut(s) 158
AsuII TTCGAA 1 cut(s) 104
AxyI CCTNAGG 1 cut(s) 80
BalI TGGCCA 1 cut(s) 765
BanI GGYRCC 2 cut(s) 229, 492
BbsI GAAGAC 2 cut(s) 603, 792
BccI CCATC 1 cut(s) 400
BciVI GTATCC 1 cut(s) 498
BcoDI GTCTC 1 cut(s) 348
BcuI ACTAGT 1 cut(s) 508
BfaI CTAG 1 cut(s) 509
BfuI GTATCC 1 cut(s) 498
BmcAI AGTACT 1 cut(s) 500
BmiI GGNNCC 2 cut(s) 231, 494
BmsI GCATC 1 cut(s) 535
BpiI GAAGAC 2 cut(s) 603, 792
Bpu14I TTCGAA 1 cut(s) 104
BsaJI CCNNGG 3 cut(s) 311, 333, 393
BsaWI WCCGGW 1 cut(s) 346
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 2 cut(s) 496, 506
Bse21I CCTNAGG 1 cut(s) 80
BseAI TCCGGA 1 cut(s) 346
BseDI CCNNGG 3 cut(s) 311, 333, 393
BseGI GGATG 2 cut(s) 293, 550
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMII CTCAG 3 cut(s) 192, 317, 771
BseNI ACTGG 2 cut(s) 496, 506
BseRI GAGGAG 1 cut(s) 350
BshFI GGCC 1 cut(s) 765
BshNI GGYRCC 2 cut(s) 229, 492
BsiSI CCGG 2 cut(s) 347, 428
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 1 cut(s) 348
BsnI GGCC 1 cut(s) 765
Bsp119I TTCGAA 1 cut(s) 104
Bsp13I TCCGGA 1 cut(s) 346
Bsp143I GATC 5 cut(s) 85, 177, 381, 471, 829
BspACI CCGC 2 cut(s) 33, 209
BspANI GGCC 1 cut(s) 765
BspCNI CTCAG 3 cut(s) 193, 318, 772
BspEI TCCGGA 1 cut(s) 346
BspLI GGNNCC 2 cut(s) 231, 494
BspPI GGATC 2 cut(s) 93, 389
BspT104I TTCGAA 1 cut(s) 104
BspT107I GGYRCC 2 cut(s) 229, 492
BsrI ACTGG 2 cut(s) 496, 506
BssECI CCNNGG 3 cut(s) 311, 333, 393
BssMI GATC 5 cut(s) 85, 177, 381, 471, 829
BssT1I CCWWGG 2 cut(s) 311, 393
Bst4CI ACNGT 4 cut(s) 526, 575, 692, 740
Bst6I CTCTTC 1 cut(s) 260
BstAPI GCANNNNNTGC 1 cut(s) 554
BstBI TTCGAA 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 217, 275
BstDEI CTNAG 4 cut(s) 80, 201, 326, 780
BstEII GGTNACC 1 cut(s) 561
BstF5I GGATG 2 cut(s) 293, 550
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 5 cut(s) 88, 180, 384, 474, 832
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 5 cut(s) 85, 177, 381, 471, 829
BstMWI GCNNNNNNNGC 1 cut(s) 554
BstNSI RCATGY 1 cut(s) 840
BstPI GGTNACC 1 cut(s) 561
BstV2I GAAGAC 2 cut(s) 603, 792
BstX2I RGATCY 2 cut(s) 85, 381
BstXI CCANNNNNNTGG 1 cut(s) 312
BstYI RGATCY 2 cut(s) 85, 381
Bsu36I CCTNAGG 1 cut(s) 80
BsuI GTATCC 1 cut(s) 498
BsuRI GGCC 1 cut(s) 765
BtsCI GGATG 2 cut(s) 293, 550
Cac8I GCNNGC 2 cut(s) 217, 275
CfoI GCGC 1 cut(s) 158
CseI GACGC 2 cut(s) 786, 801
Csp6I GTAC 1 cut(s) 499
CviAII CATG 4 cut(s) 517, 558, 674, 837
CviJI RGCY 8 cut(s) 320, 332, 340, 431, 466, 752, 765, 820
CviKI_1 RGCY 8 cut(s) 320, 332, 340, 431, 466, 752, 765, 820
CviQI GTAC 1 cut(s) 499
DdeI CTNAG 4 cut(s) 80, 201, 326, 780
DpnI GATC 5 cut(s) 87, 179, 383, 473, 831
DpnII GATC 5 cut(s) 85, 177, 381, 471, 829
DraI TTTAAA 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 763
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
EciI GGCGGA 1 cut(s) 22
Eco130I CCWWGG 2 cut(s) 311, 393
Eco57I CTGAAG 1 cut(s) 473
Eco81I CCTNAGG 1 cut(s) 80
Eco91I GGTNACC 1 cut(s) 561
EcoO65I GGTNACC 1 cut(s) 561
EcoT14I CCWWGG 2 cut(s) 311, 393
EcoT22I ATGCAT 1 cut(s) 550
ErhI CCWWGG 2 cut(s) 311, 393
FaeI CATG 4 cut(s) 520, 561, 677, 840
FatI CATG 4 cut(s) 516, 557, 673, 836
FokI GGATG 2 cut(s) 280, 557
FspBI CTAG 1 cut(s) 509
GlaI GCGC 1 cut(s) 157
HaeIII GGCC 1 cut(s) 765
HapII CCGG 2 cut(s) 347, 428
HgaI GACGC 2 cut(s) 786, 801
HhaI GCGC 1 cut(s) 158
Hin1II CATG 4 cut(s) 520, 561, 677, 840
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HinfI GANTC 2 cut(s) 92, 448
HpaII CCGG 2 cut(s) 347, 428
Hpy188I TCNGA 5 cut(s) 405, 453, 657, 756, 781
Hpy188III TCNNGA 3 cut(s) 89, 347, 827
HpyCH4III ACNGT 4 cut(s) 526, 575, 692, 740
HpyCH4V TGCA 4 cut(s) 262, 548, 557, 731
HpyF10VI GCNNNNNNNGC 1 cut(s) 554
HpyF3I CTNAG 4 cut(s) 80, 201, 326, 780
Hsp92II CATG 4 cut(s) 520, 561, 677, 840
HspAI GCGC 1 cut(s) 156
Kpn2I TCCGGA 1 cut(s) 346
Kzo9I GATC 5 cut(s) 85, 177, 381, 471, 829
LmnI GCTCC 2 cut(s) 317, 337
LweI GCATC 1 cut(s) 535
MaeI CTAG 1 cut(s) 509
MaeIII GTNAC 4 cut(s) 145, 561, 813, 824
MalI GATC 5 cut(s) 87, 179, 383, 473, 831
MboI GATC 5 cut(s) 85, 177, 381, 471, 829
MboII GAAGA 6 cut(s) 247, 348, 381, 466, 603, 792
MflI RGATCY 2 cut(s) 85, 381
MlsI TGGCCA 1 cut(s) 765
MluCI AATT 5 cut(s) 122, 584, 658, 704, 757
MluNI TGGCCA 1 cut(s) 765
MlyI GAGTC 2 cut(s) 86, 442
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 2 cut(s) 263, 328
Mox20I TGGCCA 1 cut(s) 765
Mph1103I ATGCAT 1 cut(s) 550
MroI TCCGGA 1 cut(s) 346
MscI TGGCCA 1 cut(s) 765
MseI TTAA 4 cut(s) 50, 63, 714, 841
MslI CAYNNNNRTG 3 cut(s) 372, 375, 771
Msp20I TGGCCA 1 cut(s) 765
MspI CCGG 2 cut(s) 347, 428
MwoI GCNNNNNNNGC 1 cut(s) 554
NdeII GATC 5 cut(s) 85, 177, 381, 471, 829
NlaIII CATG 4 cut(s) 520, 561, 677, 840
NlaIV GGNNCC 2 cut(s) 231, 494
NmeAIII GCCGAG 1 cut(s) 358
NmuCI GTSAC 2 cut(s) 813, 824
NsiI ATGCAT 1 cut(s) 550
NspI RCATGY 1 cut(s) 840
NspV TTCGAA 1 cut(s) 104
OliI CACNNNNGTG 1 cut(s) 771
PleI GAGTC 2 cut(s) 86, 442
PpsI GAGTC 2 cut(s) 86, 442
PspEI GGTNACC 1 cut(s) 561
PspN4I GGNNCC 2 cut(s) 231, 494
PsrI GAACNNNNNNTAC 2 cut(s) 623, 655
PsuI RGATCY 2 cut(s) 85, 381
RsaI GTAC 1 cut(s) 500
RsaNI GTAC 1 cut(s) 499
RseI CAYNNNNRTG 3 cut(s) 372, 375, 771
SaqAI TTAA 4 cut(s) 50, 63, 714, 841
Sau3AI GATC 5 cut(s) 85, 177, 381, 471, 829
ScaI AGTACT 1 cut(s) 500
SchI GAGTC 2 cut(s) 86, 442
SetI ASST 6 cut(s) 17, 81, 235, 322, 342, 775
SfaNI GCATC 1 cut(s) 535
SfuI TTCGAA 1 cut(s) 104
SmiMI CAYNNNNRTG 3 cut(s) 372, 375, 771
SpeI ACTAGT 1 cut(s) 508
Sse9I AATT 5 cut(s) 122, 584, 658, 704, 757
SsiI CCGC 2 cut(s) 33, 209
SspMI CTAG 1 cut(s) 509
StyI CCWWGG 2 cut(s) 311, 393
TaaI ACNGT 4 cut(s) 526, 575, 692, 740
TaqI TCGA 4 cut(s) 104, 142, 166, 474
TasI AATT 5 cut(s) 122, 584, 658, 704, 757
TatI WGTACW 1 cut(s) 498
Tru1I TTAA 4 cut(s) 50, 63, 714, 841
Tru9I TTAA 4 cut(s) 50, 63, 714, 841
TseFI GTSAC 2 cut(s) 813, 824
Tsp45I GTSAC 2 cut(s) 813, 824
TspDTI ATGAA 2 cut(s) 135, 226
XapI RAATTY 2 cut(s) 658, 704
XceI RCATGY 1 cut(s) 840
XspI CTAG 1 cut(s) 509
ZrmI AGTACT 1 cut(s) 500
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.