pycom10g11850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000902
Physical Location & Seq
Forward (+)
15433594 .. 15435203
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 795 bp
ATGGGAACTACTGAATCTGAGTCGCCTCTTCATGATAAACAACTACCAGCTCCTGTAAAGAAGACCGTGTTAAGAGATCTGCAAAATGTGCCCAAGGATATAGGACACACTAGTTATGTCCCTAGAGTTTCGAGCACCAAGAGACCTTTACCTGAGCGGAAGATGAGCCCTCCTCAACACCAATCCCACGGTAGCAGTGCTGCAAATGCACAGCTTGTCTATGTTCGTAGAAAATCAGAAGCAGACGCAGTCAGAAATAACGCATGTGATAAAGCAACCATTAATGCCGAGTGTCAGGTGTCAAGGAAACTTAGTCACCACGAGGCAAGCACCCGACCCATATCCCAAGCAAAGGAAACAAAAGTTTTTTGTGTGCCGGCTTTTGCATCTTTTCCGGTGGCAGCTTCAACCATTCTGCCTGGAAAACCTTCAGTTCCGGTCCCGCTTTGTAAGTCTGGTACTGGACTACCACCAGCAGGAGCCAATGGCCATCCCCATACTTCTGCTACATTGCCAAAGGGTCTAAAAAATCTGCACTGGGAAGAGCGATTCCATCAATTGCAGTTGCTGTTGAGGAAATTGGACCAATCAGAGCATGAGGATTATCTCCAGATGCTACGGTCGCTGTCCTCTGTTGAACTGAGCAGACTTGCAGTTGAGTTGGAAAAGAGATCGATTCAGCTTTCACTGGAGGAAGCAAAAGAGTTGCAACGTGTTGGGCGTTTCAATGTTCTCGGGAAATCTGTGAAGCACTTTAATGTGCCCTCAACTCAGGAAGACCAATCCAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LIN52

Protein Analysis

265

Amino Acids

29.19

Weight (kDa)

9.65

Isoelectric Point (pI)

66.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 157
AciI CCGC 2 cut(s) 157, 443
AcoI YGGCCR 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 1 cut(s) 460
AfiI CCNNNNNNNGG 2 cut(s) 352, 476
AflIII ACRYGT 1 cut(s) 712
AgsI TTSAA 3 cut(s) 408, 638, 727
AhlI ACTAGT 1 cut(s) 110
AjnI CCWGG 1 cut(s) 418
AluBI AGCT 4 cut(s) 50, 214, 404, 682
AluI AGCT 4 cut(s) 50, 214, 404, 682
Alw21I GWGCWC 1 cut(s) 137
Alw26I GTCTC 1 cut(s) 136
AlwNI CAGNNNCTG 2 cut(s) 53, 568
Ama87I CYCGRG 1 cut(s) 734
AoxI GGCC 1 cut(s) 487
ApeKI GCWGC 2 cut(s) 200, 401
AseI ATTAAT 1 cut(s) 282
Asp700I GAANNNNTTC 1 cut(s) 427
AspS9I GGNCC 2 cut(s) 439, 583
AsuHPI GGTGA 1 cut(s) 308
AvaI CYCGRG 1 cut(s) 734
AvaII GGWCC 2 cut(s) 439, 583
BaeGI GKGCMC 2 cut(s) 93, 765
BalI TGGCCA 1 cut(s) 489
BanII GRGCYC 1 cut(s) 170
BauI CACGAG 1 cut(s) 320
BbsI GAAGAC 2 cut(s) 68, 783
Bbv12I GWGCWC 1 cut(s) 137
BbvI GCAGC 2 cut(s) 187, 413
BccI CCATC 2 cut(s) 498, 561
BciT130I CCWGG 1 cut(s) 420
BcoDI GTCTC 1 cut(s) 136
BcuI ACTAGT 1 cut(s) 110
BfaI CTAG 2 cut(s) 111, 123
BglII AGATCT 1 cut(s) 76
BisI GCNGC 2 cut(s) 201, 402
BlsI GCNGC 2 cut(s) 202, 403
Bme1390I CCNGG 1 cut(s) 420
Bme18I GGWCC 2 cut(s) 439, 583
BmeT110I CYCGRG 1 cut(s) 734
BmgT120I GGNCC 2 cut(s) 439, 583
BmiI GGNNCC 2 cut(s) 441, 481
BmrFI CCNGG 1 cut(s) 420
BmrI ACTGGG 1 cut(s) 547
BmsI GCATC 2 cut(s) 395, 603
BmuI ACTGGG 1 cut(s) 547
BpiI GAAGAC 2 cut(s) 68, 783
BplI GAGNNNNNCTC 2 cut(s) 157, 189
BpmI CTGGAG 2 cut(s) 593, 710
Bpu10I CCTNAGC 1 cut(s) 153
Bsa29I ATCGAT 1 cut(s) 674
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 2 cut(s) 93, 187
BsaWI WCCGGW 2 cut(s) 394, 436
Bsc4I CCNNNNNNNGG 2 cut(s) 352, 476
Bse118I RCCGGY 1 cut(s) 376
Bse1I ACTGG 3 cut(s) 466, 542, 693
Bse3DI GCAATG 1 cut(s) 509
BseBI CCWGG 1 cut(s) 420
BseCI ATCGAT 1 cut(s) 674
BseDI CCNNGG 2 cut(s) 93, 187
BseGI GGATG 1 cut(s) 490
BseLI CCNNNNNNNGG 2 cut(s) 352, 476
BseMI GCAATG 1 cut(s) 509
BseMII CTCAG 4 cut(s) 9, 144, 632, 785
BseNI ACTGG 3 cut(s) 466, 542, 693
BseRI GAGGAG 1 cut(s) 162
BseSI GKGCMC 2 cut(s) 93, 765
BseXI GCAGC 2 cut(s) 187, 413
BsgI GTGCAG 1 cut(s) 518
Bsh1285I CGRYCG 1 cut(s) 623
BshFI GGCC 1 cut(s) 489
BshVI ATCGAT 1 cut(s) 674
BsiEI CGRYCG 1 cut(s) 623
BsiHKAI GWGCWC 1 cut(s) 137
BsiHKCI CYCGRG 1 cut(s) 734
BsiSI CCGG 3 cut(s) 377, 395, 437
BslFI GGGAC 2 cut(s) 104, 425
BslI CCNNNNNNNGG 2 cut(s) 352, 476
BsmAI GTCTC 1 cut(s) 136
BsmFI GGGAC 2 cut(s) 104, 425
BsnI GGCC 1 cut(s) 489
Bso31I GGTCTC 1 cut(s) 136
BsoBI CYCGRG 1 cut(s) 734
Bsp1286I GDGCHC 4 cut(s) 93, 137, 170, 765
Bsp143I GATC 2 cut(s) 76, 671
BspACI CCGC 2 cut(s) 157, 443
BspANI GGCC 1 cut(s) 489
BspCNI CTCAG 4 cut(s) 10, 145, 633, 784
BspDI ATCGAT 1 cut(s) 674
BspHI TCATGA 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 441, 481
BspQI GCTCTTC 1 cut(s) 537
BspTNI GGTCTC 1 cut(s) 136
BsrBI CCGCTC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 509
BsrFI RCCGGY 1 cut(s) 376
BsrI ACTGG 3 cut(s) 466, 542, 693
BssAI RCCGGY 1 cut(s) 376
BssECI CCNNGG 2 cut(s) 93, 187
BssMI GATC 2 cut(s) 76, 671
BssSI CACGAG 1 cut(s) 320
BssT1I CCWWGG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 3 cut(s) 67, 191, 621
Bst6I CTCTTC 2 cut(s) 33, 537
BstAPI GCANNNNNTGC 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 328, 378
BstDEI CTNAG 5 cut(s) 18, 153, 311, 641, 771
BstDSI CCRYGG 1 cut(s) 187
BstF5I GGATG 1 cut(s) 490
BstKTI GATC 2 cut(s) 79, 674
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 2 cut(s) 76, 671
BstMCI CGRYCG 1 cut(s) 623
BstMWI GCNNNNNNNGC 3 cut(s) 88, 206, 622
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 418
BstSLI GKGCMC 2 cut(s) 93, 765
BstV1I GCAGC 2 cut(s) 187, 413
BstV2I GAAGAC 2 cut(s) 68, 783
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
Bsu15I ATCGAT 1 cut(s) 674
BsuRI GGCC 1 cut(s) 489
BsuTUI ATCGAT 1 cut(s) 674
BtgI CCRYGG 1 cut(s) 187
BtsCI GGATG 1 cut(s) 490
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 3 cut(s) 202, 535, 686
Cac8I GCNNGC 2 cut(s) 328, 378
CaiI CAGNNNCTG 2 cut(s) 53, 568
CciI TCATGA 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 376
Cfr13I GGNCC 2 cut(s) 439, 583
ClaI ATCGAT 1 cut(s) 674
CseI GACGC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 459
CviAII CATG 3 cut(s) 32, 264, 596
CviJI RGCY 8 cut(s) 50, 168, 214, 380, 404, 482, 489, 682
CviKI_1 RGCY 8 cut(s) 50, 168, 214, 380, 404, 482, 489, 682
CviQI GTAC 1 cut(s) 459
DdeI CTNAG 5 cut(s) 18, 153, 311, 641, 771
DpnI GATC 2 cut(s) 78, 673
DpnII GATC 2 cut(s) 76, 671
EaeI YGGCCR 1 cut(s) 487
Eam1104I CTCTTC 2 cut(s) 33, 537
EarI CTCTTC 2 cut(s) 33, 537
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 136
Eco47I GGWCC 2 cut(s) 439, 583
Eco57I CTGAAG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 734
EcoRII CCWGG 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 3 cut(s) 35, 267, 599
FaiI YATR 8 cut(s) 33, 101, 117, 222, 265, 341, 498, 597
FaqI GGGAC 2 cut(s) 104, 425
FatI CATG 3 cut(s) 31, 263, 595
FauI CCCGC 1 cut(s) 450
Fnu4HI GCNGC 2 cut(s) 201, 402
FokI GGATG 1 cut(s) 477
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 2 cut(s) 201, 402
FspBI CTAG 2 cut(s) 111, 123
GluI GCNGC 2 cut(s) 201, 402
GsuI CTGGAG 2 cut(s) 593, 710
HaeIII GGCC 1 cut(s) 489
HapII CCGG 3 cut(s) 377, 395, 437
HgaI GACGC 1 cut(s) 254
Hin1II CATG 3 cut(s) 35, 267, 599
HinfI GANTC 4 cut(s) 14, 20, 549, 676
HpaII CCGG 3 cut(s) 377, 395, 437
HphI GGTGA 1 cut(s) 308
Hpy188I TCNGA 4 cut(s) 19, 238, 254, 592
Hpy188III TCNNGA 4 cut(s) 32, 610, 736, 773
HpyAV CCTTC 1 cut(s) 438
HpyCH4III ACNGT 3 cut(s) 67, 191, 621
HpyCH4IV ACGT 1 cut(s) 712
HpyCH4V TGCA 8 cut(s) 82, 203, 209, 386, 535, 562, 653, 709
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 206, 622
HpyF3I CTNAG 5 cut(s) 18, 153, 311, 641, 771
HpySE526I ACGT 1 cut(s) 712
Hsp92II CATG 3 cut(s) 35, 267, 599
KroI GCCGGC 1 cut(s) 376
KroNI GCCGGC 1 cut(s) 378
Kzo9I GATC 2 cut(s) 76, 671
LguI GCTCTTC 1 cut(s) 537
LmnI GCTCC 2 cut(s) 55, 479
Lsp1109I GCAGC 2 cut(s) 187, 413
LweI GCATC 2 cut(s) 395, 603
MaeI CTAG 2 cut(s) 111, 123
MaeII ACGT 1 cut(s) 712
MaeIII GTNAC 1 cut(s) 314
MalI GATC 2 cut(s) 78, 673
MbiI CCGCTC 1 cut(s) 157
MboI GATC 2 cut(s) 76, 671
MboII GAAGA 5 cut(s) 20, 73, 172, 554, 788
MfeI CAATTG 1 cut(s) 557
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 4 cut(s) 93, 137, 170, 765
MlsI TGGCCA 1 cut(s) 489
MluCI AATT 2 cut(s) 557, 578
MluNI TGGCCA 1 cut(s) 489
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 642
MnlI CCTC 9 cut(s) 36, 180, 183, 316, 567, 592, 640, 685, 775
Mox20I TGGCCA 1 cut(s) 489
MroNI GCCGGC 1 cut(s) 376
MroXI GAANNNNTTC 1 cut(s) 427
MscI TGGCCA 1 cut(s) 489
MseI TTAA 3 cut(s) 71, 282, 756
MslI CAYNNNNRTG 1 cut(s) 756
Msp20I TGGCCA 1 cut(s) 489
MspI CCGG 3 cut(s) 377, 395, 437
MspR9I CCNGG 1 cut(s) 420
MunI CAATTG 1 cut(s) 557
MvaI CCWGG 1 cut(s) 420
MwoI GCNNNNNNNGC 3 cut(s) 88, 206, 622
NaeI GCCGGC 1 cut(s) 378
NdeII GATC 2 cut(s) 76, 671
NgoMIV GCCGGC 1 cut(s) 376
NlaIII CATG 3 cut(s) 35, 267, 599
NlaIV GGNNCC 2 cut(s) 441, 481
NmeAIII GCCGAG 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 314
NspI RCATGY 1 cut(s) 267
PagI TCATGA 1 cut(s) 31
PciSI GCTCTTC 1 cut(s) 537
PcsI WCGNNNNNNNCGW 1 cut(s) 718
PdiI GCCGGC 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 427
PfeI GAWTC 3 cut(s) 14, 549, 676
PflFI GACNNNGTC 1 cut(s) 248
PkrI GCNGC 2 cut(s) 202, 403
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PshBI ATTAAT 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 2 cut(s) 441, 481
PspPI GGNCC 2 cut(s) 439, 583
PstNI CAGNNNCTG 2 cut(s) 53, 568
PsuI RGATCY 1 cut(s) 76
PsyI GACNNNGTC 1 cut(s) 248
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
RseI CAYNNNNRTG 1 cut(s) 756
SapI GCTCTTC 1 cut(s) 537
SaqAI TTAA 3 cut(s) 71, 282, 756
SatI GCNGC 2 cut(s) 201, 402
Sau3AI GATC 2 cut(s) 76, 671
Sau96I GGNCC 2 cut(s) 439, 583
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 4 cut(s) 93, 137, 170, 765
SetI ASST 9 cut(s) 52, 148, 154, 216, 300, 406, 430, 684, 715
SfaNI GCATC 2 cut(s) 395, 603
SinI GGWCC 2 cut(s) 439, 583
SmiMI CAYNNNNRTG 1 cut(s) 756
SpeI ACTAGT 1 cut(s) 110
Sse9I AATT 2 cut(s) 557, 578
SsiI CCGC 2 cut(s) 157, 443
SspMI CTAG 2 cut(s) 111, 123
StyD4I CCNGG 1 cut(s) 418
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 3 cut(s) 67, 191, 621
TaiI ACGT 1 cut(s) 715
TaqI TCGA 2 cut(s) 131, 674
TasI AATT 2 cut(s) 557, 578
TfiI GAWTC 3 cut(s) 14, 549, 676
Tru1I TTAA 3 cut(s) 71, 282, 756
Tru9I TTAA 3 cut(s) 71, 282, 756
TscAI CASTG 3 cut(s) 202, 542, 693
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 2 cut(s) 200, 401
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 3 cut(s) 202, 542, 693
Tth111I GACNNNGTC 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 439, 583
VspI ATTAAT 1 cut(s) 282
XceI RCATGY 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 427
XspI CTAG 2 cut(s) 111, 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.