Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001087

Physical Location & Seq

Genomic Coordinates Reverse (-)

23406299 .. 23407383

Gene Structure 1085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGGCCATACATTCCCTGAAATAGTTCTGATGGTTGTTTCTGGCATTTTTGTCTGGACATTGCTTGAATACACATTGCACCGCTTTCTTTTCCACTTTGAAACAAATAGCTACTGGTGGAACACCTTACATTATCTCCTTCACGGCTGCCATCATAAGCACCCAATGGACGGCCTGAGACTTGTTTTCCCTCCTGCTGCGACAGCTGTTTTATGCATTCCATTCTTTAACTTGGTAAAGCTGATGGCCTCTCCTACTGTTGCTCCTGCTTTGTTTGGAGGCGGTTTATTGGGCTACGTGATGTATGATTGCACCCATTACTATCTTCATCACGGCCAGCCATCAAGTGAGGTACCCCGAAATCTGAAGAAATACCACTTGAATCATCACTTCAGGATCCAAGATAAGGGCTTCGGAATAACTTCAAGTTTATGGGACAGGGTGTTCGGAACACTTCCACAATCGAAAGCAGCCAAGAAAGTCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

163

Amino Acids

18.68

Weight (kDa)

9.35

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	13 - 151	2.9e-17	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34770 AT4G20870 AT4G20870
fragaria_vesca	FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10720 FvH4_3g10760 FvH4_3g10760 FvH4_3g10760 FvH4_3g10780 FvH4_3g10780 FvH4_3g10780
malus_domestica	MD05G1268900.v1.1
prunus_persica	Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1 Prupe.4G095700_v2.0.a1
pyrus_communis	pycom05g25190 pycom10g20540
rosa_chinensis	RchiOBHm_Chr5g0017441 RchiOBHm_Chr5g0017481 RchiOBHm_Chr5g0017491 RchiOBHm_Chr5g0017501
rosa_laevigata	RLG00000032287 RLG00000032288 RLG00000032292 RLG00000032294
rosa_multiflora	Rmu_sc0007392.1_g000004 Rmu_sc0013973.1_g000006
rosa_roxburghii	Rroxscaffold_1G00059930 Rroxscaffold_1G00059950
rosa_rugosa	Rorug05G0035400 Rorug05G0035500 Rorug05G0035800 Rorug05G0035900 Rorug05G0036000 Rorug05G0036100 Rorug05G0036200 Rorug05G0036300 Rorug05G0036400 Rorug05G0036500 Rorug05G0036600
rosa_samantha	Rh5AG130200 Rh5AG130400 Rh5BG128400 Rh5BG128600 Rh5CG140900 Rh5DG130400 Rh5DG130600 Rh5DG130700 Rh5DG130800 Rh7BG398200
rosa_wichuraiana	Rw5G011240 Rw5G011250 Rw5G011260 Rw5G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	352
AccB1I	GGYRCC	1 cut(s)	352
AciI	CCGC	2 cut(s)	82, 282
AclWI	GGATC	2 cut(s)	391, 404
AcoI	YGGCCR	1 cut(s)	334
AcuI	CTGAAG	2 cut(s)	376, 386
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	2 cut(s)	170, 406
AgsI	TTSAA	4 cut(s)	68, 101, 382, 426
AloI	GAACNNNNNNTCC	2 cut(s)	428, 460
AluBI	AGCT	3 cut(s)	111, 206, 241
AluI	AGCT	3 cut(s)	111, 206, 241
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	2 cut(s)	391, 404
AoxI	GGCC	4 cut(s)	4, 172, 246, 334
ApeKI	GCWGC	3 cut(s)	147, 197, 470
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
Asp700I	GAANNNNTTC	2 cut(s)	24, 421
Asp718I	GGTACC	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	4
BamHI	GGATCC	1 cut(s)	396
BanI	GGYRCC	1 cut(s)	352
BbvI	GCAGC	3 cut(s)	134, 184, 482
BccI	CCATC	4 cut(s)	25, 159, 238, 349
BceAI	ACGGC	3 cut(s)	160, 187, 349
BcoDI	GTCTC	1 cut(s)	172
BisI	GCNGC	3 cut(s)	148, 198, 471
BlsI	GCNGC	3 cut(s)	149, 199, 472
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	354, 398
BsaAI	YACGTR	1 cut(s)	298
BsaXI	ACNNNNNCTCC	4 cut(s)	120, 150, 247, 277
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 406
Bse1I	ACTGG	1 cut(s)	119
Bse3DI	GCAATG	2 cut(s)	59, 74
BseLI	CCNNNNNNNGG	2 cut(s)	170, 406
BseMI	GCAATG	2 cut(s)	59, 74
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	119
BseXI	GCAGC	3 cut(s)	134, 184, 482
BshFI	GGCC	4 cut(s)	6, 174, 248, 336
BshNI	GGYRCC	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	2 cut(s)	170, 406
BsmAI	GTCTC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	449
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	4 cut(s)	6, 174, 248, 336
Bsp143I	GATC	1 cut(s)	396
BspACI	CCGC	2 cut(s)	82, 282
BspANI	GGCC	4 cut(s)	6, 174, 248, 336
BspCNI	CTCAG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	354, 398
BspPI	GGATC	2 cut(s)	391, 404
BspT107I	GGYRCC	1 cut(s)	352
BsrDI	GCAATG	2 cut(s)	59, 74
BsrI	ACTGG	1 cut(s)	119
BssMI	GATC	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	259
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	1 cut(s)	176
BstKTI	GATC	1 cut(s)	399
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	396
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstV1I	GCAGC	3 cut(s)	134, 184, 482
BstX2I	RGATCY	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	396
BsuRI	GGCC	4 cut(s)	6, 174, 248, 336
Cac8I	GCNNGC	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	353
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	1 cut(s)	398
DpnII	GATC	1 cut(s)	396
EaeI	YGGCCR	1 cut(s)	334
Eco57I	CTGAAG	2 cut(s)	376, 386
EcoT22I	ATGCAT	1 cut(s)	218
FaiI	YATR	5 cut(s)	9, 156, 214, 306, 433
FaqI	GGGAC	1 cut(s)	449
Fnu4HI	GCNGC	3 cut(s)	148, 198, 471
Fsp4HI	GCNGC	3 cut(s)	148, 198, 471
GluI	GCNGC	3 cut(s)	148, 198, 471
HaeIII	GGCC	4 cut(s)	6, 174, 248, 336
HinfI	GANTC	1 cut(s)	382
Hpy188I	TCNGA	5 cut(s)	30, 366, 416, 449, 485
Hpy188III	TCNNGA	2 cut(s)	55, 394
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	3 cut(s)	79, 216, 312
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	1 cut(s)	176
HpySE526I	ACGT	1 cut(s)	297
KpnI	GGTACC	1 cut(s)	356
Kzo9I	GATC	1 cut(s)	396
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	3 cut(s)	134, 184, 482
MaeII	ACGT	1 cut(s)	297
MalI	GATC	1 cut(s)	398
MboI	GATC	1 cut(s)	396
MboII	GAAGA	2 cut(s)	317, 379
MflI	RGATCY	1 cut(s)	396
MnlI	CCTC	4 cut(s)	201, 259, 272, 343
Mph1103I	ATGCAT	1 cut(s)	218
MroXI	GAANNNNTTC	2 cut(s)	24, 421
MseI	TTAA	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	206
Mva1269I	GAATGC	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	203
NdeII	GATC	1 cut(s)	396
NlaIV	GGNNCC	2 cut(s)	354, 398
NsiI	ATGCAT	1 cut(s)	218
PctI	GAATGC	1 cut(s)	216
PdmI	GAANNNNTTC	2 cut(s)	24, 421
PfeI	GAWTC	1 cut(s)	382
PkrI	GCNGC	3 cut(s)	149, 199, 472
Ppu21I	YACGTR	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	354, 398
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	396
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	3 cut(s)	148, 198, 471
Sau3AI	GATC	1 cut(s)	396
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	6 cut(s)	113, 128, 208, 243, 300, 354
SsiI	CCGC	2 cut(s)	82, 282
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	1 cut(s)	464
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseI	GCWGC	3 cut(s)	147, 197, 470
TspDTI	ATGAA	1 cut(s)	317
XmnI	GAANNNNTTC	2 cut(s)	24, 421
Zsp2I	ATGCAT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.