Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003805

Physical Location & Seq

Genomic Coordinates Forward (+)

27530502 .. 27531005

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTCGTTCTCTCGAGTTCTCCAGCGCTCCTTCTGCACCGCCACCCAATCCAACGTCACCAGCAGTAGGAGCATTGGCGCCATCTCCACCGACCTCTACAAAGAGCGCAACCTCAAACGCCTCGTTGAGAAGTTCAAAAAATCATCCGAGCTCTATCGCTTCCATACCAAACTCTCATTTACGAGGACACCGTACGCCGTCTCGCCTCCGCAAAACGCTTCGAGTGGATCGAGGAGATCCTGGAGGACCAGAAGCAGCACGCGGACCTCTCCAACGAGGGATTCGCTGTCCGACTGGTTACGCTTCACGGGAAATCTGGCATGTTCGAGAATCCGGTGTTTGACGAAATGCCTGAGAAAAACTGTGAGCGCACCGTCTTGTCCTTTAATACCCTCTTGGGTGCTTGTGTTAACTCCAAGAAATTTGACAAGGTTGATGAGGTTTTCAGAGGGGTCTCTCAGAAGTTGTCGATTGAACCAGATATGGTGTCGTATAATACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

168

Amino Acids

19.2

Weight (kDa)

11.48

Isoelectric Point (pI)

71.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55890 AT3G13160
fragaria_vesca	FvH4_3g03043 FvH4_3g03070 FvH4_3g03080 FvH4_3g03160
malus_domestica	MD05G1334700.v1.1
prunus_persica	Prupe.4G030500_v2.0.a1
pyrus_communis	pycom05g30630 pycom10g26130
rosa_chinensis	RchiOBHm_Chr5g0004741 RchiOBHm_Chr5g0004781
rosa_laevigata	RLG00000030227 RLG00000030229 RLG00000031256 RLG00000031258 RLG00000031259 RLG00000031261
rosa_multiflora	Rmu_co8370515.1_g000001 Rmu_sc0002210.1_g000010 Rmu_sc0002210.1_g000016 Rmu_sc0008308.1_g000003 Rmu_sc0008308.1_g000014 Rmu_sc0010871.1_g000008 Rmu_sc0010871.1_g000027
rosa_roxburghii	Rroxscaffold_1G00070810 Rroxscaffold_1G00070830
rosa_samantha	Rh5BG041400 Rh5CG044900 Rh5CG045300 Rh5DG041300 Rh5DG041500 Rh5DG041800
rosa_wichuraiana	Rw5G004020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccII	CGCG	1 cut(s)	262
AciI	CCGC	3 cut(s)	39, 209, 262
AclWI	GGATC	2 cut(s)	231, 235
AcsI	RAATTY	1 cut(s)	421
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	1 cut(s)	194
AfeI	AGCGCT	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	136, 475
AjnI	CCWGG	1 cut(s)	239
AjuI	GAANNNNNNNTTGG	2 cut(s)	265, 297
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	2 cut(s)	205, 459
AlwI	GGATC	2 cut(s)	231, 235
Ama87I	CYCGRG	1 cut(s)	12
Aor51HI	AGCGCT	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	255
ApoI	RAATTY	1 cut(s)	421
AspLEI	GCGC	4 cut(s)	27, 80, 108, 371
AspS9I	GGNCC	2 cut(s)	246, 264
AsuHPI	GGTGA	1 cut(s)	49
AvaI	CYCGRG	1 cut(s)	12
AvaII	GGWCC	2 cut(s)	246, 264
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	241
BcoDI	GTCTC	2 cut(s)	205, 459
BfoI	RGCGCY	2 cut(s)	28, 81
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	241
Bme18I	GGWCC	2 cut(s)	246, 264
BmeT110I	CYCGRG	1 cut(s)	12
BmgT120I	GGNCC	2 cut(s)	246, 264
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	241
BpmI	CTGGAG	2 cut(s)	5, 262
BsaHI	GRCGYC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	459
BsaWI	WCCGGW	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	241
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	344, 472
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	267
BsgI	GTGCAG	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	262
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	334
BsiWI	CGTACG	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	2 cut(s)	205, 459
BsmBI	CGTCTC	1 cut(s)	205
Bso31I	GGTCTC	1 cut(s)	459
BsoBI	CYCGRG	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	2 cut(s)	227, 236
BspACI	CCGC	3 cut(s)	39, 209, 262
BspCNI	CTCAG	2 cut(s)	345, 471
BspFNI	CGCG	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	79
BspPI	GGATC	2 cut(s)	231, 235
BspT107I	GGYRCC	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	299
BssMI	GATC	2 cut(s)	227, 236
BssNI	GRCGYC	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	241
Bst4CI	ACNGT	4 cut(s)	192, 364, 375, 501
BstACI	GRCGYC	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	2 cut(s)	353, 458
BstF5I	GGATG	1 cut(s)	143
BstFNI	CGCG	1 cut(s)	262
BstH2I	RGCGCY	2 cut(s)	28, 81
BstHHI	GCGC	4 cut(s)	27, 80, 108, 371
BstKTI	GATC	2 cut(s)	230, 239
BstMAI	GTCTC	2 cut(s)	205, 459
BstMBI	GATC	2 cut(s)	227, 236
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 69
BstNI	CCWGG	1 cut(s)	241
BstNSI	RCATGY	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	239
BstUI	CGCG	1 cut(s)	262
BstV1I	GCAGC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	260
CfoI	GCGC	4 cut(s)	27, 80, 108, 371
Cfr13I	GGNCC	2 cut(s)	246, 264
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	1 cut(s)	321
CviJI	RGCY	1 cut(s)	151
CviKI_1	RGCY	1 cut(s)	151
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	2 cut(s)	353, 458
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	2 cut(s)	229, 238
DpnII	GATC	2 cut(s)	227, 236
Ecl136II	GAGCTC	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	459
Eco47I	GGWCC	2 cut(s)	246, 264
Eco47III	AGCGCT	1 cut(s)	26
Eco53kI	GAGCTC	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	12
EcoICRI	GAGCTC	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	239
EcoT38I	GRGCYC	1 cut(s)	153
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
Esp3I	CGTCTC	1 cut(s)	205
FaeI	CATG	1 cut(s)	324
FaiI	YATR	4 cut(s)	165, 322, 484, 494
FatI	CATG	1 cut(s)	320
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	1 cut(s)	130
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	256
GlaI	GCGC	4 cut(s)	26, 79, 107, 370
GluI	GCNGC	1 cut(s)	256
GsuI	CTGGAG	2 cut(s)	5, 262
HaeII	RGCGCY	2 cut(s)	28, 81
HapII	CCGG	1 cut(s)	334
HhaI	GCGC	4 cut(s)	27, 80, 108, 371
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	324
Hin6I	GCGC	4 cut(s)	25, 78, 106, 369
HinP1I	GCGC	4 cut(s)	25, 78, 106, 369
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	2 cut(s)	281, 330
HpaI	GTTAAC	1 cut(s)	411
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	4 cut(s)	148, 292, 448, 461
Hpy188III	TCNNGA	2 cut(s)	12, 327
Hpy8I	GTNNAC	1 cut(s)	411
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	4 cut(s)	192, 364, 375, 501
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 69
HpyF3I	CTNAG	2 cut(s)	353, 458
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	324
HspAI	GCGC	4 cut(s)	25, 78, 106, 369
KasI	GGCGCC	1 cut(s)	77
KspAI	GTTAAC	1 cut(s)	411
Kzo9I	GATC	2 cut(s)	227, 236
LmnI	GCTCC	2 cut(s)	32, 69
Lsp1109I	GCAGC	1 cut(s)	267
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	55, 297
MalI	GATC	2 cut(s)	229, 238
MboI	GATC	2 cut(s)	227, 236
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	1 cut(s)	421
Mly113I	GGCGCC	1 cut(s)	78
MmeI	TCCRAC	3 cut(s)	75, 296, 315
MseI	TTAA	2 cut(s)	386, 410
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	241
MvnI	CGCG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	33, 69
NarI	GGCGCC	1 cut(s)	78
NdeII	GATC	2 cut(s)	227, 236
NlaIII	CATG	1 cut(s)	324
NlaIV	GGNNCC	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	324
PaeR7I	CTCGAG	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	2 cut(s)	188, 227
PfeI	GAWTC	2 cut(s)	281, 330
Pfl23II	CGTACG	1 cut(s)	192
PfoI	TCCNGGA	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	257
PluTI	GGCGCC	1 cut(s)	81
Psp124BI	GAGCTC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	239
PspLI	CGTACG	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	246, 264
PsuI	RGATCY	1 cut(s)	236
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
SacI	GAGCTC	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	386, 410
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	2 cut(s)	227, 236
Sau96I	GGNCC	2 cut(s)	246, 264
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	7 cut(s)	57, 96, 114, 153, 269, 434, 443
SfoI	GGCGCC	1 cut(s)	79
Sfr274I	CTCGAG	1 cut(s)	12
SinI	GGWCC	2 cut(s)	246, 264
SlaI	CTCGAG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	1 cut(s)	421
SsiI	CCGC	3 cut(s)	39, 209, 262
SspDI	GGCGCC	1 cut(s)	77
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	239
TaaI	ACNGT	4 cut(s)	192, 364, 375, 501
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	5 cut(s)	13, 221, 230, 326, 469
TasI	AATT	1 cut(s)	421
TfiI	GAWTC	2 cut(s)	281, 330
Tru1I	TTAA	2 cut(s)	386, 410
Tru9I	TTAA	2 cut(s)	386, 410
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	255
Tsp45I	GTSAC	1 cut(s)	55
VpaK11BI	GGWCC	2 cut(s)	246, 264
XapI	RAATTY	1 cut(s)	421
XceI	RCATGY	1 cut(s)	324
XhoI	CTCGAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.