pycom11g00220

YTH domain family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0001378
Physical Location & Seq
Reverse (-)
189826 .. 193550
3725 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2106 bp
ATGGCCACCGTTGCTCCTCCTGTGGAACAAGCAGCAGATTTGCTACAGAAGATGTCATTAGACTCTCAAACCAAGACTCTGGAAATTCCTGAGCCTACCAAGAAGCCTTCTGTTAACCAATCCGGGTCTATTGATTCTGGCAATGCTGCAAATGGACAGATCCCAGAAGATCGCTCTGTTACCCCATTGTTACCTGATTTCGCGGATCCATCTATGTGCTATCTCCCGAACAGTTATCCGTCTACTGCCTATTACTATGGAGGCTATGATGGGACTGGCAGCGAGTGGGATGAGTACTCGAGATATGTAAATCCTGAGGGAGTAGAGATGACTTCTGGTGTTTATGGGGACAACGGGTCTCTGATATACCACCATGGTTATGGGTATGCACCGTATGCCCCATATTCTCCTGCTGGCTCCCCTGTTCCAACTATGGGAAATGATGGTCAGTTATATGGACCTCAGCAGTACCAATACCCTCCCTATTTCCAGCCTCTGACTCCAACCAGTGGACCGTACACTCCCAACCCTGCGGCCCCACAAACTGATGTCGCCACCTCTGTAGCTGCTGACCAAAAGCCACTGTCTGTGGAAACAGCTAATGGAATTTCTAATGGCATTGCAGACGGTGGAGGTGTGAAAGGAAATAATGTTTCAGCTCCCTCGTCAACATATCAAAACTCGTCTTTCAACTCTAATGGTTCATATGGGAGGGGTGCTTTGCCAGGACGTGTTCCTACTCCTGGATACCAGGACCCAAGATTTGGTTTTGATGGGTTGCGTTCTCCTCGTCCATGGTTAGATGCCCCACTTTTTTCGGACGGGCAACCTAGACCAGTGACAAGTACAATTACTTCATCAATCTCCAATGGCAATACTAATTTGTCTTCAAGGAATCAGAATTACCGTCCAAATTCTCATTACATGGGTTTGCACCACCCAAGGCCATTGTCAGGAATGGGTACAGCTCAAGGGTTTATAAATAGGATGTACCCAAGCAAGCTGTATGGTCAGTATGGAAACACAGATCGATCTGGTATGGGCTTTGGGTATCATGCTTATGATTCACGAACCAATGGACGCACATGGCTTGCTGTTGACAACAAGTATAAGCCCAGGGGAAGAAATGGTGGCTATTATGGATATGGTAATGAGAACATGGATGGATTAAATGAACTAAACAGGGGGCCTCGGGCGAAGAGCTCCAAGAATCAAAAGGGATTTGCCTCTAATGCATTAGCAATCAAGGGGCAGGTACCAACGAATCCTAGTAATGATGAGGAAAACGAAAAAACCAGTGTCCCAGATCGAGAACAATACAACAAAGCAGATTTTCCCGAGGAGTATACCGATGCCAAATTCTTCATCATTAAGTCTTACAGTGAGGATGATGTTCATAAGAGCATTAAATATAATGTTTGGGCCAGTACGCCAAATGGCAACAAGAAGCTTCATGCTGCTTACCAGGAGGCTCAGGAGAAATCTGGTGGCTGCCGGGTTTTTCTTCTCTTTTCGACCAGTGGACAGTTTGTTGGCCTTGCCGAGATGTTGGGCCCTGTTGATTTTAACAAGAACTTGGAGTACTGGCAGCAAGACAAGTGGAATGGCTGTTTCCCTGTCAAGTGGCATATCGTTAAAGATGTTCCCAACAGTTTGCTGAAGCACATTACTCTTGAAAATAATGAGAATAAGCCTGTGACCAACAGTAGGGACACTCAGGAGGTCAAATTGGAGCCAGGGCTTAAAATAATTAAAATCTTCAAGGAACATATAAGCAAAACTTGCATTCTGGATGACTTTGGGTTCTATGAGGCCCGCCAGAAGACAATTCAGGAGAAGAAGGCTAAGCAACAGCAGTTTCAGAAACAGGTATGGGAAGGAAAAAACAATGATGAGAAGGAGGTGGAAAATGGGCAACTGAAGACTCAAAATTCATTGGAGGTTTCCGCTGAGTTGACCAAGGAATCTGTTCCGGCGGTGAATGGAAGTGAGGAGCCGAAAGTTGCAGAAAACGGATCGATTGCATCTGGAGATGCCCCAAAGGGTGCTAAGCCAGTTGTGTCAGAGAAGAGGGTTGTAGTGAATGGGGTTGCGAATGGTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

702

Amino Acids

76.81

Weight (kDa)

6.19

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 452 - 588 4.9e-44 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 980
Acc36I ACCTGC 1 cut(s) 1243
Acc65I GGTACC 1 cut(s) 1255
AccB1I GGYRCC 1 cut(s) 1255
AccB7I CCANNNNNTGG 2 cut(s) 509, 764
AccI GTMKAC 2 cut(s) 242, 1346
AccII CGCG 1 cut(s) 203
AciI CCGC 5 cut(s) 203, 533, 1816, 1947, 1976
AclWI GGATC 4 cut(s) 154, 200, 213, 2023
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 84, 606, 913, 1358, 1930
AcuI CTGAAG 2 cut(s) 1679, 1940
AfaI GTAC 9 cut(s) 296, 470, 518, 847, 964, 992, 1257, 1429, 1583
AfiI CCNNNNNNNGG 6 cut(s) 434, 509, 743, 764, 953, 1707
AflIII ACRYGT 1 cut(s) 730
AgsI TTSAA 4 cut(s) 691, 891, 1676, 1762
AhdI GACNNNNNGTC 1 cut(s) 355
AjiI CACGTC 1 cut(s) 731
AjnI CCWGG 6 cut(s) 724, 742, 750, 1115, 1464, 1735
AluBI AGCT 7 cut(s) 566, 599, 659, 968, 1003, 1203, 1450
AluI AGCT 7 cut(s) 566, 599, 659, 968, 1003, 1203, 1450
Alw21I GWGCWC 1 cut(s) 1205
Alw26I GTCTC 1 cut(s) 363
AlwI GGATC 4 cut(s) 154, 200, 213, 2023
AlwNI CAGNNNCTG 1 cut(s) 496
Ama87I CYCGRG 3 cut(s) 298, 1191, 1337
AoxI GGCC 8 cut(s) 3, 534, 944, 1187, 1422, 1534, 1552, 1812
ApaI GGGCCC 1 cut(s) 1556
ApeKI GCWGC 7 cut(s) 32, 146, 279, 566, 1457, 1491, 1588
ApoI RAATTY 5 cut(s) 84, 606, 913, 1358, 1930
ArsI GACNNNNNNTTYG 2 cut(s) 746, 778
Asp700I GAANNNNTTC 1 cut(s) 1968
Asp718I GGTACC 1 cut(s) 1255
AspS9I GGNCC 9 cut(s) 458, 512, 535, 754, 1187, 1422, 1552, 1553, 1813
AsuC2I CCSGG 2 cut(s) 124, 1496
AsuHPI GGTGA 1 cut(s) 1990
AvaI CYCGRG 3 cut(s) 298, 1191, 1337
AvaII GGWCC 3 cut(s) 458, 512, 754
AxyI CCTNAGG 1 cut(s) 315
BaeGI GKGCMC 1 cut(s) 1556
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 1255
BanII GRGCYC 2 cut(s) 1205, 1556
BarI GAAGNNNNNNTAC 2 cut(s) 838, 870
BbsI GAAGAC 3 cut(s) 879, 1829, 1928
Bbv12I GWGCWC 1 cut(s) 1205
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 7 cut(s) 44, 133, 291, 553, 1444, 1478, 1600
BccI CCATC 5 cut(s) 217, 263, 437, 767, 1157
BciT130I CCWGG 6 cut(s) 726, 744, 752, 1117, 1466, 1737
BciVI GTATCC 1 cut(s) 740
BcnI CCSGG 2 cut(s) 124, 1496
BcoDI GTCTC 1 cut(s) 363
BfaI CTAG 3 cut(s) 831, 1269, 2104
BfmI CTRYAG 2 cut(s) 44, 561
BfuAI ACCTGC 1 cut(s) 1243
BfuI GTATCC 1 cut(s) 740
BisI GCNGC 8 cut(s) 33, 147, 280, 534, 567, 1458, 1492, 1589
BlpI GCTNAGC 2 cut(s) 1845, 2049
BlsI GCNGC 8 cut(s) 34, 148, 281, 535, 568, 1459, 1493, 1590
BmcAI AGTACT 2 cut(s) 296, 1583
Bme1390I CCNGG 8 cut(s) 124, 726, 744, 752, 1117, 1466, 1496, 1737
Bme18I GGWCC 3 cut(s) 458, 512, 754
BmeRI GACNNNNNGTC 1 cut(s) 355
BmeT110I CYCGRG 3 cut(s) 298, 1191, 1337
BmgBI CACGTC 1 cut(s) 731
BmgT120I GGNCC 9 cut(s) 458, 512, 535, 754, 1187, 1422, 1552, 1553, 1813
BmiI GGNNCC 9 cut(s) 207, 418, 537, 756, 1188, 1257, 1554, 1734, 1995
BmrFI CCNGG 8 cut(s) 124, 726, 744, 752, 1117, 1466, 1496, 1737
BmsI GCATC 4 cut(s) 793, 1342, 2023, 2033
BpiI GAAGAC 3 cut(s) 879, 1829, 1928
BpmI CTGGAG 1 cut(s) 2049
Bpu10I CCTNAGC 3 cut(s) 90, 462, 1473
Bpu1102I GCTNAGC 2 cut(s) 1845, 2049
BpuEI CTTGAG 1 cut(s) 954
BpuMI CCSGG 2 cut(s) 124, 1496
Bsa29I ATCGAT 2 cut(s) 1030, 2018
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 9 cut(s) 373, 794, 941, 1115, 1116, 1190, 1338, 1736, 1959
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 6 cut(s) 434, 509, 743, 764, 953, 1707
Bse1I ACTGG 8 cut(s) 280, 507, 836, 1296, 1425, 1518, 1589, 2054
Bse21I CCTNAGG 1 cut(s) 315
Bse3DI GCAATG 2 cut(s) 148, 618
BseBI CCWGG 6 cut(s) 726, 744, 752, 1117, 1466, 1737
BseCI ATCGAT 2 cut(s) 1030, 2018
BseDI CCNNGG 9 cut(s) 373, 794, 941, 1115, 1116, 1190, 1338, 1736, 1959
BseGI GGATG 5 cut(s) 295, 993, 1168, 1393, 1798
BseLI CCNNNNNNNGG 6 cut(s) 434, 509, 743, 764, 953, 1707
BseMI GCAATG 2 cut(s) 148, 618
BseMII CTCAG 6 cut(s) 81, 306, 476, 1487, 1730, 1941
BseNI ACTGG 8 cut(s) 280, 507, 836, 1296, 1425, 1518, 1589, 2054
BseRI GAGGAG 4 cut(s) 6, 777, 1355, 2006
BseSI GKGCMC 1 cut(s) 1556
BseXI GCAGC 7 cut(s) 44, 133, 291, 553, 1444, 1478, 1600
Bsh1236I CGCG 1 cut(s) 203
BshFI GGCC 8 cut(s) 5, 536, 946, 1189, 1424, 1536, 1554, 1814
BshNI GGYRCC 1 cut(s) 1255
BshVI ATCGAT 2 cut(s) 1030, 2018
BsiHKAI GWGCWC 1 cut(s) 1205
BsiHKCI CYCGRG 3 cut(s) 298, 1191, 1337
BsiSI CCGG 3 cut(s) 123, 1495, 1973
BslFI GGGAC 4 cut(s) 286, 362, 1286, 1724
BslI CCNNNNNNNGG 6 cut(s) 434, 509, 743, 764, 953, 1707
BsmAI GTCTC 1 cut(s) 363
BsmFI GGGAC 4 cut(s) 286, 362, 1286, 1724
BsmI GAATGC 1 cut(s) 1785
BsnI GGCC 8 cut(s) 5, 536, 946, 1189, 1424, 1536, 1554, 1814
Bso31I GGTCTC 1 cut(s) 363
BsoBI CYCGRG 3 cut(s) 298, 1191, 1337
Bsp120I GGGCCC 1 cut(s) 1552
Bsp1286I GDGCHC 2 cut(s) 1205, 1556
Bsp143I GATC 7 cut(s) 159, 169, 205, 1027, 1031, 1306, 2015
Bsp1720I GCTNAGC 2 cut(s) 1845, 2049
Bsp19I CCATGG 2 cut(s) 373, 794
BspACI CCGC 5 cut(s) 203, 533, 1816, 1947, 1976
BspANI GGCC 8 cut(s) 5, 536, 946, 1189, 1424, 1536, 1554, 1814
BspCNI CTCAG 6 cut(s) 82, 307, 475, 1486, 1729, 1942
BspDI ATCGAT 2 cut(s) 1030, 2018
BspFNI CGCG 1 cut(s) 203
BspLI GGNNCC 9 cut(s) 207, 418, 537, 756, 1188, 1257, 1554, 1734, 1995
BspMI ACCTGC 1 cut(s) 1243
BspPI GGATC 4 cut(s) 154, 200, 213, 2023
BspQI GCTCTTC 1 cut(s) 1193
BspT107I GGYRCC 1 cut(s) 1255
BspTNI GGTCTC 1 cut(s) 363
BsrDI GCAATG 2 cut(s) 148, 618
BsrI ACTGG 8 cut(s) 280, 507, 836, 1296, 1425, 1518, 1589, 2054
BssECI CCNNGG 9 cut(s) 373, 794, 941, 1115, 1116, 1190, 1338, 1736, 1959
BssMI GATC 7 cut(s) 159, 169, 205, 1027, 1031, 1306, 2015
BssNAI GTATAC 1 cut(s) 1347
BssT1I CCWWGG 4 cut(s) 373, 794, 941, 1959
Bst1107I GTATAC 1 cut(s) 1347
Bst2UI CCWGG 6 cut(s) 726, 744, 752, 1117, 1466, 1737
Bst6I CTCTTC 2 cut(s) 1193, 2063
BstAPI GCANNNNNTGC 2 cut(s) 395, 1782
BstC8I GCNNGC 4 cut(s) 415, 1001, 1092, 1816
BstDEI CTNAG 8 cut(s) 90, 315, 462, 1473, 1716, 1845, 1950, 2049
BstDSI CCRYGG 2 cut(s) 373, 794
BstF5I GGATG 5 cut(s) 295, 993, 1168, 1393, 1798
BstFNI CGCG 1 cut(s) 203
BstKTI GATC 7 cut(s) 162, 172, 208, 1030, 1034, 1309, 2018
BstMAI GTCTC 1 cut(s) 363
BstMBI GATC 7 cut(s) 159, 169, 205, 1027, 1031, 1306, 2015
BstMWI GCNNNNNNNGC 4 cut(s) 11, 395, 1232, 1782
BstNI CCWGG 6 cut(s) 726, 744, 752, 1117, 1466, 1737
BstSCI CCNGG 8 cut(s) 122, 724, 742, 750, 1115, 1464, 1494, 1735
BstSFI CTRYAG 2 cut(s) 44, 561
BstSLI GKGCMC 1 cut(s) 1556
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 7 cut(s) 44, 133, 291, 553, 1444, 1478, 1600
BstV2I GAAGAC 3 cut(s) 879, 1829, 1928
BstX2I RGATCY 2 cut(s) 159, 205
BstXI CCANNNNNNTGG 2 cut(s) 79, 380
BstYI RGATCY 2 cut(s) 159, 205
BstZ17I GTATAC 1 cut(s) 1347
Bsu15I ATCGAT 2 cut(s) 1030, 2018
Bsu36I CCTNAGG 1 cut(s) 315
BsuI GTATCC 1 cut(s) 740
BsuRI GGCC 8 cut(s) 5, 536, 946, 1189, 1424, 1536, 1554, 1814
BsuTUI ATCGAT 2 cut(s) 1030, 2018
BtgI CCRYGG 2 cut(s) 373, 794
BtrI CACGTC 1 cut(s) 731
BtsCI GGATG 5 cut(s) 295, 993, 1168, 1393, 1798
BtsIMutI CAGTG 6 cut(s) 514, 581, 843, 1303, 1387, 1525
BveI ACCTGC 1 cut(s) 1243
Cac8I GCNNGC 4 cut(s) 415, 1001, 1092, 1816
CaiI CAGNNNCTG 1 cut(s) 496
Cfr13I GGNCC 9 cut(s) 458, 512, 535, 754, 1187, 1422, 1552, 1553, 1813
ClaI ATCGAT 2 cut(s) 1030, 2018
CseI GACGC 1 cut(s) 1089
Csp6I GTAC 9 cut(s) 295, 469, 517, 846, 963, 991, 1256, 1428, 1582
CspCI CAANNNNNGTGG 2 cut(s) 1580, 1615
CviAII CATG 7 cut(s) 374, 795, 925, 1055, 1086, 1159, 1454
CviQI GTAC 9 cut(s) 295, 469, 517, 846, 963, 991, 1256, 1428, 1582
DdeI CTNAG 8 cut(s) 90, 315, 462, 1473, 1716, 1845, 1950, 2049
DpnI GATC 7 cut(s) 161, 171, 207, 1029, 1033, 1308, 2017
DpnII GATC 7 cut(s) 159, 169, 205, 1027, 1031, 1306, 2015
DriI GACNNNNNGTC 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 1193, 2063
Eam1105I GACNNNNNGTC 1 cut(s) 355
EarI CTCTTC 2 cut(s) 1193, 2063
Ecl136II GAGCTC 1 cut(s) 1203
Eco130I CCWWGG 4 cut(s) 373, 794, 941, 1959
Eco24I GRGCYC 2 cut(s) 1205, 1556
Eco31I GGTCTC 1 cut(s) 363
Eco47I GGWCC 3 cut(s) 458, 512, 754
Eco53kI GAGCTC 1 cut(s) 1203
Eco57I CTGAAG 2 cut(s) 1679, 1940
Eco81I CCTNAGG 1 cut(s) 315
Eco88I CYCGRG 3 cut(s) 298, 1191, 1337
EcoICRI GAGCTC 1 cut(s) 1203
EcoO109I RGGNCCY 3 cut(s) 754, 1187, 1553
EcoRII CCWGG 6 cut(s) 724, 742, 750, 1115, 1464, 1735
EcoT14I CCWWGG 4 cut(s) 373, 794, 941, 1959
EcoT22I ATGCAT 1 cut(s) 1237
EcoT38I GRGCYC 2 cut(s) 1205, 1556
ErhI CCWWGG 4 cut(s) 373, 794, 941, 1959
FaeI CATG 7 cut(s) 377, 798, 928, 1058, 1089, 1162, 1457
FalI AAGNNNNNCTT 2 cut(s) 1765, 1797
FaqI GGGAC 4 cut(s) 286, 362, 1286, 1724
FatI CATG 7 cut(s) 373, 794, 924, 1054, 1085, 1158, 1453
FauI CCCGC 1 cut(s) 1823
FauNDI CATATG 1 cut(s) 706
FblI GTMKAC 2 cut(s) 242, 1346
Fnu4HI GCNGC 8 cut(s) 33, 147, 280, 534, 567, 1458, 1492, 1589
FokI GGATG 5 cut(s) 302, 1000, 1175, 1400, 1805
FriOI GRGCYC 2 cut(s) 1205, 1556
Fsp4HI GCNGC 8 cut(s) 33, 147, 280, 534, 567, 1458, 1492, 1589
FspBI CTAG 3 cut(s) 831, 1269, 2104
GluI GCNGC 8 cut(s) 33, 147, 280, 534, 567, 1458, 1492, 1589
GsuI CTGGAG 1 cut(s) 2049
HaeIII GGCC 8 cut(s) 5, 536, 946, 1189, 1424, 1536, 1554, 1814
HapII CCGG 3 cut(s) 123, 1495, 1973
HgaI GACGC 1 cut(s) 1089
Hin1II CATG 7 cut(s) 377, 798, 928, 1058, 1089, 1162, 1457
HincII GTYRAC 4 cut(s) 115, 669, 1099, 1956
HindII GTYRAC 4 cut(s) 115, 669, 1099, 1956
HindIII AAGCTT 1 cut(s) 1448
HpaI GTTAAC 1 cut(s) 115
HpaII CCGG 3 cut(s) 123, 1495, 1973
HphI GGTGA 1 cut(s) 1990
Hpy166II GTNNAC 9 cut(s) 115, 243, 512, 519, 669, 1099, 1347, 1523, 1956
Hpy188I TCNGA 6 cut(s) 363, 498, 820, 900, 1863, 2065
Hpy8I GTNNAC 9 cut(s) 115, 243, 512, 519, 669, 1099, 1347, 1523, 1956
HpyAV CCTTC 4 cut(s) 117, 1834, 1871, 1891
HpyCH4IV ACGT 1 cut(s) 730
HpyCH4V TGCA 8 cut(s) 149, 389, 623, 934, 1235, 1785, 2006, 2024
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 395, 1232, 1782
HpyF3I CTNAG 8 cut(s) 90, 315, 462, 1473, 1716, 1845, 1950, 2049
HpySE526I ACGT 1 cut(s) 730
Hsp92II CATG 7 cut(s) 377, 798, 928, 1058, 1089, 1162, 1457
KpnI GGTACC 1 cut(s) 1259
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 7 cut(s) 159, 169, 205, 1027, 1031, 1306, 2015
LguI GCTCTTC 1 cut(s) 1193
LmnI GCTCC 6 cut(s) 19, 422, 664, 1208, 1732, 1993
Lsp1109I GCAGC 7 cut(s) 44, 133, 291, 553, 1444, 1478, 1600
LweI GCATC 4 cut(s) 793, 1342, 2023, 2033
MaeI CTAG 3 cut(s) 831, 1269, 2104
MaeII ACGT 1 cut(s) 730
MaeIII GTNAC 4 cut(s) 178, 189, 838, 1696
MalI GATC 7 cut(s) 161, 171, 207, 1029, 1033, 1308, 2017
MboI GATC 7 cut(s) 159, 169, 205, 1027, 1031, 1306, 2015
MflI RGATCY 2 cut(s) 159, 205
MhlI GDGCHC 2 cut(s) 1205, 1556
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 56, 70, 493, 1918
MmeI TCCRAC 2 cut(s) 452, 527
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 1237
MroXI GAANNNNTTC 1 cut(s) 1968
MscI TGGCCA 1 cut(s) 5
MseI TTAA 8 cut(s) 114, 1169, 1371, 1407, 1566, 1635, 1743, 1752
MslI CAYNNNNRTG 3 cut(s) 214, 378, 1059
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 1949
MspI CCGG 3 cut(s) 123, 1495, 1973
MspR9I CCNGG 8 cut(s) 124, 726, 744, 752, 1117, 1466, 1496, 1737
Mva1269I GAATGC 1 cut(s) 1785
MvaI CCWGG 6 cut(s) 726, 744, 752, 1117, 1466, 1737
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 4 cut(s) 11, 395, 1232, 1782
NciI CCSGG 2 cut(s) 124, 1496
NcoI CCATGG 2 cut(s) 373, 794
NdeI CATATG 1 cut(s) 706
NdeII GATC 7 cut(s) 159, 169, 205, 1027, 1031, 1306, 2015
NlaIII CATG 7 cut(s) 377, 798, 928, 1058, 1089, 1162, 1457
NlaIV GGNNCC 9 cut(s) 207, 418, 537, 756, 1188, 1257, 1554, 1734, 1995
NmeAIII GCCGAG 1 cut(s) 1567
NmuCI GTSAC 2 cut(s) 838, 1696
NsiI ATGCAT 1 cut(s) 1237
PaeR7I CTCGAG 1 cut(s) 298
PasI CCCWGGG 1 cut(s) 1116
PciSI GCTCTTC 1 cut(s) 1193
PctI GAATGC 1 cut(s) 1785
PdmI GAANNNNTTC 1 cut(s) 1968
PfeI GAWTC 6 cut(s) 134, 895, 1064, 1210, 1264, 1964
PflMI CCANNNNNTGG 2 cut(s) 509, 764
PfoI TCCNGGA 1 cut(s) 742
PkrI GCNGC 8 cut(s) 34, 148, 281, 535, 568, 1459, 1493, 1590
PleI GAGTC 4 cut(s) 56, 70, 493, 1918
PpsI GAGTC 4 cut(s) 56, 70, 493, 1918
PpuMI RGGWCCY 1 cut(s) 754
PsiI TTATAA 1 cut(s) 980
Psp124BI GAGCTC 1 cut(s) 1205
Psp5II RGGWCCY 1 cut(s) 754
Psp6I CCWGG 6 cut(s) 724, 742, 750, 1115, 1464, 1735
PspGI CCWGG 6 cut(s) 724, 742, 750, 1115, 1464, 1735
PspN4I GGNNCC 9 cut(s) 207, 418, 537, 756, 1188, 1257, 1554, 1734, 1995
PspOMI GGGCCC 1 cut(s) 1552
PspPI GGNCC 9 cut(s) 458, 512, 535, 754, 1187, 1422, 1552, 1553, 1813
PspPPI RGGWCCY 1 cut(s) 754
PsrI GAACNNNNNNTAC 2 cut(s) 1565, 1597
PstNI CAGNNNCTG 1 cut(s) 496
PsuI RGATCY 2 cut(s) 159, 205
RsaI GTAC 9 cut(s) 296, 470, 518, 847, 964, 992, 1257, 1429, 1583
RsaNI GTAC 9 cut(s) 295, 469, 517, 846, 963, 991, 1256, 1428, 1582
RseI CAYNNNNRTG 3 cut(s) 214, 378, 1059
SacI GAGCTC 1 cut(s) 1205
SapI GCTCTTC 1 cut(s) 1193
SaqAI TTAA 8 cut(s) 114, 1169, 1371, 1407, 1566, 1635, 1743, 1752
SatI GCNGC 8 cut(s) 33, 147, 280, 534, 567, 1458, 1492, 1589
Sau3AI GATC 7 cut(s) 159, 169, 205, 1027, 1031, 1306, 2015
Sau96I GGNCC 9 cut(s) 458, 512, 535, 754, 1187, 1422, 1552, 1553, 1813
ScaI AGTACT 2 cut(s) 296, 1583
SchI GAGTC 4 cut(s) 56, 70, 493, 1918
ScrFI CCNGG 8 cut(s) 124, 726, 744, 752, 1117, 1466, 1496, 1737
SduI GDGCHC 2 cut(s) 1205, 1556
SfaNI GCATC 4 cut(s) 793, 1342, 2023, 2033
SfcI CTRYAG 2 cut(s) 44, 561
Sfr274I CTCGAG 1 cut(s) 298
SinI GGWCC 3 cut(s) 458, 512, 754
SlaI CTCGAG 1 cut(s) 298
SmiMI CAYNNNNRTG 3 cut(s) 214, 378, 1059
SmlI CTYRAG 2 cut(s) 298, 969
SmoI CTYRAG 2 cut(s) 298, 969
SsiI CCGC 5 cut(s) 203, 533, 1816, 1947, 1976
SspMI CTAG 3 cut(s) 831, 1269, 2104
SstI GAGCTC 1 cut(s) 1205
StyD4I CCNGG 8 cut(s) 122, 724, 742, 750, 1115, 1464, 1494, 1735
StyI CCWWGG 4 cut(s) 373, 794, 941, 1959
TaiI ACGT 1 cut(s) 733
TaqI TCGA 5 cut(s) 299, 1030, 1309, 1514, 2018
TatI WGTACW 3 cut(s) 294, 845, 1581
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 6 cut(s) 134, 895, 1064, 1210, 1264, 1964
Tru1I TTAA 8 cut(s) 114, 1169, 1371, 1407, 1566, 1635, 1743, 1752
Tru9I TTAA 8 cut(s) 114, 1169, 1371, 1407, 1566, 1635, 1743, 1752
TscAI CASTG 6 cut(s) 514, 588, 843, 1303, 1387, 1525
TseFI GTSAC 2 cut(s) 838, 1696
TseI GCWGC 7 cut(s) 32, 146, 279, 566, 1457, 1491, 1588
Tsp45I GTSAC 2 cut(s) 838, 1696
TspDTI ATGAA 7 cut(s) 693, 846, 1188, 1354, 1385, 1442, 1923
TspGWI ACGGA 2 cut(s) 228, 2028
TspRI CASTG 6 cut(s) 514, 588, 843, 1303, 1387, 1525
Van91I CCANNNNNTGG 2 cut(s) 509, 764
VpaK11BI GGWCC 3 cut(s) 458, 512, 754
XapI RAATTY 5 cut(s) 84, 606, 913, 1358, 1930
XcmI CCANNNNNNNNNTGG 1 cut(s) 377
XhoI CTCGAG 1 cut(s) 298
XmiI GTMKAC 2 cut(s) 242, 1346
XmnI GAANNNNTTC 1 cut(s) 1968
XspI CTAG 3 cut(s) 831, 1269, 2104
ZrmI AGTACT 2 cut(s) 296, 1583
Zsp2I ATGCAT 1 cut(s) 1237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.