pycom11g01070

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003999
Physical Location & Seq
Reverse (-)
843032 .. 844717
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 975 bp
ATGTCTTCATTTTCAATTGCAGGAGCAATATTTGTTCTTGTTTTTACTAGTGTGTTGGGAAATGTTAACGCTCAACTAAGCTCAACTTTCTACAGTACCACATGCCCGAATGTGACGAGCATTGTTCGTGGTGTGGTCGAGCAAGCTCAACAGAATGACATCCGGCTTGGTGCCAAACTCATCCGGGTGCATTTCCACGACTGCTTCGTCAATGGTTGTGATGGATCGATTATGCTAGACAACGCAGATGGAATAGATAGCGAGAAAGATGCAGGTCCCAATCTATCGACAGACGGATACAACGTCGTAGATGATATCAAAACTGCTCTCGAGAATGTTTGCCCTGGTGTTGTCTCCTGTTCTGACATTTTAGCAATTGCTTCTGAAATTCTTGTTTCTGCGAATGGAGGGCCGACGTGGGAAGTTCAATTGGGAAGAAGAGACAGTAGGACAGCCAACCGAGCTGGTACCACTGCCATTCCAGGCTTTGGCGAAAACCTTGATCAACTTTCACAAAAATTTGGCGACGCAGGATTAGATTCCACTGATCTGGTTGCTTTATCAGGTGCTCATACATTTGGCCGGGCAAGATGTTCAACTTTCGTTCACCGCCTCTACAATTTCAGTGGCACCGGCAACCCGGACCCGACCATGGAAGCCGGATACTTGGAAACCCTCCGCCAAACATGTCCTCAAAACGGCAACGGAGATACATTGAACGACCTTGACCAATCCACCCGCGATGCCTTCGACAACAACTACTTTACAAATCTCCAAAACAACCGTGGGCTTCTCCAAACCGATCAGGTGCTGTTCTCAACTAGCGGAGACACCGTTGCGATTGTGAACCGCTTTGCAAATAGCCAAAGTGACTTTTTTGATAGCTTTGGTCAGTCCATGATCAATATGGGGAATATAGGAGTTTTGACAGGCACCAATGGAGAGATTAGGACTAATTGCAGAAGGGTTAATTAA

Protein Analysis

325

Amino Acids

34.72

Weight (kDa)

4.56

Isoelectric Point (pI)

26.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 42 - 288 3e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 206
Acc36I ACCTGC 1 cut(s) 263
Acc65I GGTACC 1 cut(s) 467
AccB1I GGYRCC 4 cut(s) 170, 467, 629, 932
AccB7I CCANNNNNTGG 1 cut(s) 488
AccII CGCG 1 cut(s) 741
AciI CCGC 5 cut(s) 610, 679, 739, 825, 850
AclWI GGATC 1 cut(s) 232
AcoI YGGCCR 1 cut(s) 580
AcsI RAATTY 2 cut(s) 387, 518
AfaI GTAC 2 cut(s) 97, 469
AfiI CCNNNNNNNGG 3 cut(s) 488, 652, 698
AflIII ACRYGT 1 cut(s) 686
AgsI TTSAA 4 cut(s) 15, 428, 597, 718
AhlI ACTAGT 1 cut(s) 47
AjiI CACGTC 1 cut(s) 417
AjnI CCWGG 2 cut(s) 343, 481
AluBI AGCT 4 cut(s) 81, 146, 464, 885
AluI AGCT 4 cut(s) 81, 146, 464, 885
Alw21I GWGCWC 1 cut(s) 571
Alw26I GTCTC 3 cut(s) 358, 435, 822
AlwI GGATC 1 cut(s) 232
AlwNI CAGNNNCTG 1 cut(s) 811
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 2 cut(s) 410, 580
ApoI RAATTY 2 cut(s) 387, 518
Asp718I GGTACC 1 cut(s) 467
AspS9I GGNCC 3 cut(s) 275, 410, 643
AsuC2I CCSGG 3 cut(s) 185, 584, 641
AsuHPI GGTGA 1 cut(s) 599
AvaI CYCGRG 1 cut(s) 329
AvaII GGWCC 2 cut(s) 275, 643
BanI GGYRCC 4 cut(s) 170, 467, 629, 932
Bbv12I GWGCWC 1 cut(s) 571
BccI CCATC 2 cut(s) 215, 242
BceAI ACGGC 1 cut(s) 715
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BciT130I CCWGG 2 cut(s) 345, 483
BciVI GTATCC 2 cut(s) 290, 656
BclI TGATCA 2 cut(s) 502, 900
BcnI CCSGG 3 cut(s) 185, 584, 641
BcoDI GTCTC 3 cut(s) 358, 435, 822
BcuI ACTAGT 1 cut(s) 47
BfaI CTAG 3 cut(s) 48, 236, 822
BfmI CTRYAG 1 cut(s) 91
BfuAI ACCTGC 1 cut(s) 263
BfuI GTATCC 2 cut(s) 290, 656
Bme1390I CCNGG 5 cut(s) 185, 345, 483, 584, 641
Bme18I GGWCC 2 cut(s) 275, 643
BmeT110I CYCGRG 1 cut(s) 329
BmgBI CACGTC 1 cut(s) 417
BmgT120I GGNCC 3 cut(s) 275, 410, 643
BmiI GGNNCC 6 cut(s) 172, 277, 469, 631, 645, 934
BmrFI CCNGG 5 cut(s) 185, 345, 483, 584, 641
BmsI GCATC 2 cut(s) 259, 733
BpuMI CCSGG 3 cut(s) 185, 584, 641
Bsa29I ATCGAT 1 cut(s) 227
BsaJI CCNNGG 3 cut(s) 343, 651, 784
BsaXI ACNNNNNCTCC 2 cut(s) 819, 849
Bsc4I CCNNNNNNNGG 3 cut(s) 488, 652, 698
Bse118I RCCGGY 1 cut(s) 632
BseBI CCWGG 2 cut(s) 345, 483
BseCI ATCGAT 1 cut(s) 227
BseDI CCNNGG 3 cut(s) 343, 651, 784
BseGI GGATG 2 cut(s) 159, 180
BseLI CCNNNNNNNGG 3 cut(s) 488, 652, 698
Bsh1236I CGCG 1 cut(s) 741
BshFI GGCC 2 cut(s) 412, 582
BshNI GGYRCC 4 cut(s) 170, 467, 629, 932
BshVI ATCGAT 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 571
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 6 cut(s) 163, 184, 583, 633, 641, 660
BslFI GGGAC 1 cut(s) 261
BslI CCNNNNNNNGG 3 cut(s) 488, 652, 698
BsmAI GTCTC 3 cut(s) 358, 435, 822
BsmFI GGGAC 1 cut(s) 261
BsnI GGCC 2 cut(s) 412, 582
BsoBI CYCGRG 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 571
Bsp143I GATC 5 cut(s) 224, 502, 547, 802, 900
Bsp19I CCATGG 1 cut(s) 651
BspACI CCGC 5 cut(s) 610, 679, 739, 825, 850
BspANI GGCC 2 cut(s) 412, 582
BspDI ATCGAT 1 cut(s) 227
BspFNI CGCG 1 cut(s) 741
BspLI GGNNCC 6 cut(s) 172, 277, 469, 631, 645, 934
BspMI ACCTGC 1 cut(s) 263
BspPI GGATC 1 cut(s) 232
BspT107I GGYRCC 4 cut(s) 170, 467, 629, 932
BsrFI RCCGGY 1 cut(s) 632
BssAI RCCGGY 1 cut(s) 632
BssECI CCNNGG 3 cut(s) 343, 651, 784
BssMI GATC 5 cut(s) 224, 502, 547, 802, 900
BssT1I CCWWGG 1 cut(s) 651
Bst2UI CCWGG 2 cut(s) 345, 483
Bst4CI ACNGT 4 cut(s) 95, 446, 785, 835
Bst6I CTCTTC 1 cut(s) 433
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 77
BstDSI CCRYGG 2 cut(s) 651, 784
BstF5I GGATG 2 cut(s) 159, 180
BstFNI CGCG 1 cut(s) 741
BstKTI GATC 5 cut(s) 227, 505, 550, 805, 903
BstMAI GTCTC 3 cut(s) 358, 435, 822
BstMBI GATC 5 cut(s) 224, 502, 547, 802, 900
BstMWI GCNNNNNNNGC 1 cut(s) 461
BstNI CCWGG 2 cut(s) 345, 483
BstNSI RCATGY 2 cut(s) 105, 690
BstSCI CCNGG 5 cut(s) 183, 343, 481, 582, 639
BstSFI CTRYAG 1 cut(s) 91
BstUI CGCG 1 cut(s) 741
BstXI CCANNNNNNTGG 1 cut(s) 550
Bsu15I ATCGAT 1 cut(s) 227
BsuI GTATCC 2 cut(s) 290, 656
BsuRI GGCC 2 cut(s) 412, 582
BsuTUI ATCGAT 1 cut(s) 227
BtgI CCRYGG 2 cut(s) 651, 784
BtgZI GCGATG 1 cut(s) 756
BtrI CACGTC 1 cut(s) 417
BtsCI GGATG 2 cut(s) 159, 180
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 3 cut(s) 471, 543, 631
BveI ACCTGC 1 cut(s) 263
Cac8I GCNNGC 1 cut(s) 144
CaiI CAGNNNCTG 1 cut(s) 811
Cfr10I RCCGGY 1 cut(s) 632
Cfr13I GGNCC 3 cut(s) 275, 410, 643
ClaI ATCGAT 1 cut(s) 227
CseI GACGC 1 cut(s) 536
Csp6I GTAC 2 cut(s) 96, 468
CspCI CAANNNNNGTGG 2 cut(s) 607, 642
CviAII CATG 4 cut(s) 102, 652, 687, 898
CviQI GTAC 2 cut(s) 96, 468
DdeI CTNAG 1 cut(s) 77
DpnI GATC 5 cut(s) 226, 504, 549, 804, 902
DpnII GATC 5 cut(s) 224, 502, 547, 802, 900
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
EaeI YGGCCR 1 cut(s) 580
Eam1104I CTCTTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 433
EciI GGCGGA 1 cut(s) 668
Eco130I CCWWGG 1 cut(s) 651
Eco32I GATATC 1 cut(s) 316
Eco47I GGWCC 2 cut(s) 275, 643
Eco88I CYCGRG 1 cut(s) 329
EcoO109I RGGNCCY 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 343, 481
EcoRV GATATC 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 651
ErhI CCWWGG 1 cut(s) 651
FaeI CATG 4 cut(s) 105, 655, 690, 901
FaiI YATR 8 cut(s) 103, 233, 573, 653, 688, 899, 908, 917
FalI AAGNNNNNCTT 2 cut(s) 70, 102
FaqI GGGAC 1 cut(s) 261
FatI CATG 4 cut(s) 101, 651, 686, 897
FauI CCCGC 1 cut(s) 746
FbaI TGATCA 2 cut(s) 502, 900
FokI GGATG 2 cut(s) 146, 167
FspBI CTAG 3 cut(s) 48, 236, 822
HaeIII GGCC 2 cut(s) 412, 582
HapII CCGG 6 cut(s) 163, 184, 583, 633, 641, 660
HgaI GACGC 1 cut(s) 536
Hin1II CATG 4 cut(s) 105, 655, 690, 901
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 1 cut(s) 539
HpaI GTTAAC 1 cut(s) 67
HpaII CCGG 6 cut(s) 163, 184, 583, 633, 641, 660
HphI GGTGA 1 cut(s) 599
Hpy166II GTNNAC 3 cut(s) 67, 607, 847
Hpy188I TCNGA 2 cut(s) 364, 385
Hpy188III TCNNGA 2 cut(s) 329, 331
Hpy8I GTNNAC 3 cut(s) 67, 607, 847
Hpy99I CGWCG 3 cut(s) 308, 418, 530
HpyAV CCTTC 2 cut(s) 757, 957
HpyCH4III ACNGT 4 cut(s) 95, 446, 785, 835
HpyCH4IV ACGT 2 cut(s) 303, 416
HpyCH4V TGCA 5 cut(s) 20, 190, 272, 857, 960
HpyF10VI GCNNNNNNNGC 1 cut(s) 461
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 2 cut(s) 303, 416
Hsp92II CATG 4 cut(s) 105, 655, 690, 901
KpnI GGTACC 1 cut(s) 471
Ksp22I TGATCA 2 cut(s) 502, 900
KspAI GTTAAC 1 cut(s) 67
Kzo9I GATC 5 cut(s) 224, 502, 547, 802, 900
LmnI GCTCC 1 cut(s) 23
LweI GCATC 2 cut(s) 259, 733
MaeI CTAG 3 cut(s) 48, 236, 822
MaeII ACGT 2 cut(s) 303, 416
MaeIII GTNAC 2 cut(s) 112, 869
MalI GATC 5 cut(s) 226, 504, 549, 804, 902
MboI GATC 5 cut(s) 224, 502, 547, 802, 900
MboII GAAGA 2 cut(s) 447, 450
MfeI CAATTG 3 cut(s) 15, 375, 428
MhlI GDGCHC 1 cut(s) 571
MluCI AATT 8 cut(s) 15, 375, 387, 428, 518, 619, 955, 970
MnlI CCTC 4 cut(s) 401, 623, 686, 702
MseI TTAA 3 cut(s) 66, 969, 973
MslI CAYNNNNRTG 1 cut(s) 185
MspI CCGG 6 cut(s) 163, 184, 583, 633, 641, 660
MspR9I CCNGG 5 cut(s) 185, 345, 483, 584, 641
MunI CAATTG 3 cut(s) 15, 375, 428
MvaI CCWGG 2 cut(s) 345, 483
MvnI CGCG 1 cut(s) 741
MwoI GCNNNNNNNGC 1 cut(s) 461
NciI CCSGG 3 cut(s) 185, 584, 641
NcoI CCATGG 1 cut(s) 651
NdeII GATC 5 cut(s) 224, 502, 547, 802, 900
NlaIII CATG 4 cut(s) 105, 655, 690, 901
NlaIV GGNNCC 6 cut(s) 172, 277, 469, 631, 645, 934
NmuCI GTSAC 2 cut(s) 112, 869
NspI RCATGY 2 cut(s) 105, 690
PacI TTAATTAA 1 cut(s) 973
PaeR7I CTCGAG 1 cut(s) 329
PciI ACATGT 1 cut(s) 686
PcsI WCGNNNNNNNCGW 2 cut(s) 204, 300
PfeI GAWTC 1 cut(s) 539
PflMI CCANNNNNTGG 1 cut(s) 488
PpuMI RGGWCCY 1 cut(s) 275
PscI ACATGT 1 cut(s) 686
Psp5II RGGWCCY 1 cut(s) 275
Psp6I CCWGG 2 cut(s) 343, 481
PspGI CCWGG 2 cut(s) 343, 481
PspN4I GGNNCC 6 cut(s) 172, 277, 469, 631, 645, 934
PspPI GGNCC 3 cut(s) 275, 410, 643
PspPPI RGGWCCY 1 cut(s) 275
PstNI CAGNNNCTG 1 cut(s) 811
RsaI GTAC 2 cut(s) 97, 469
RsaNI GTAC 2 cut(s) 96, 468
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 3 cut(s) 66, 969, 973
Sau3AI GATC 5 cut(s) 224, 502, 547, 802, 900
Sau96I GGNCC 3 cut(s) 275, 410, 643
ScrFI CCNGG 5 cut(s) 185, 345, 483, 584, 641
SduI GDGCHC 1 cut(s) 571
SfaNI GCATC 2 cut(s) 259, 733
SfcI CTRYAG 1 cut(s) 91
Sfr274I CTCGAG 1 cut(s) 329
SinI GGWCC 2 cut(s) 275, 643
SlaI CTCGAG 1 cut(s) 329
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SpeI ACTAGT 1 cut(s) 47
Sse9I AATT 8 cut(s) 15, 375, 387, 428, 518, 619, 955, 970
SsiI CCGC 5 cut(s) 610, 679, 739, 825, 850
SspI AATATT 1 cut(s) 30
SspMI CTAG 3 cut(s) 48, 236, 822
StyD4I CCNGG 5 cut(s) 183, 343, 481, 582, 639
StyI CCWWGG 1 cut(s) 651
TaaI ACNGT 4 cut(s) 95, 446, 785, 835
TaiI ACGT 2 cut(s) 306, 419
TaqI TCGA 5 cut(s) 138, 227, 287, 330, 750
TasI AATT 8 cut(s) 15, 375, 387, 428, 518, 619, 955, 970
TfiI GAWTC 1 cut(s) 539
Tru1I TTAA 3 cut(s) 66, 969, 973
Tru9I TTAA 3 cut(s) 66, 969, 973
TscAI CASTG 3 cut(s) 478, 550, 631
TseFI GTSAC 2 cut(s) 112, 869
Tsp45I GTSAC 2 cut(s) 112, 869
TspGWI ACGGA 2 cut(s) 309, 720
TspRI CASTG 3 cut(s) 478, 550, 631
Van91I CCANNNNNTGG 1 cut(s) 488
VpaK11BI GGWCC 2 cut(s) 275, 643
XapI RAATTY 2 cut(s) 387, 518
XceI RCATGY 2 cut(s) 105, 690
XcmI CCANNNNNNNNNTGG 2 cut(s) 782, 904
XhoI CTCGAG 1 cut(s) 329
XspI CTAG 3 cut(s) 48, 236, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.