pycom11g13130

Heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0005531
Physical Location & Seq
Reverse (-)
12328798 .. 12330579
1782 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 672 bp
ATGGAGATTCCAAGTTCGTCGTCAATGGCGCTTCTACTACTACCCATCTTCATCCTCCCAAACTTTTTCTGCCTATGCAGCGCGATCGAGTCGCCTCAGTACTCCGTGGTTCACTCGGAATCCGACTTCGAGATCAGACTCTACAGACTAACCCCCTGGATGTCTGCTCCTGTTACGGACATCTCCTTCGAGAAAGCCACCAAAAATGGCTTCCACAGACTGTTCCAGTACATCCAAGGTGCCAATTTGAACTTCTCTCGGATTGCAATGACAGCGCCTGTTTTGACAAGCATAGTCCCGGGAGCTGGCCCCCTTCACTCGTCGGCCTATTTTGTCAGATTCTACTTGCCTACGAAGTTCCAAAGTACCCCTCCCACACCCCTCCCCGAACTCAACTTGAAATCCTACACATGGGACAGTCATTACATTGCCGTCAGGAAGTTCTCTGGGTTCGCAAGAGATACTAACATTGTGAAAGAGGCAGAGAAACTCGCCACCAGCTTGAGCAGGTCTCCATGGGCAAACTCTACATCAGCAGAAAGTAGCTACGCTTACTCGATTGCACAGTACAACTCCCCATTCCGATTTATTGGTCGTGTGAATGAAGTTTGGGTTGATGTCAATGCATCTGGAGTGGATGGCTATAAATCCAGCGAAATAGCTACATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

224

Amino Acids

24.97

Weight (kDa)

7.76

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOUL PF04832 29 - 205 3.9e-53 SOUL heme-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 498
AccB1I GGYRCC 1 cut(s) 239
AccII CGCG 1 cut(s) 83
AfaI GTAC 4 cut(s) 101, 230, 367, 569
AfiI CCNNNNNNNGG 2 cut(s) 305, 411
AgsI TTSAA 2 cut(s) 250, 400
AjnI CCWGG 1 cut(s) 155
AjuI GAANNNNNNNTTGG 4 cut(s) 194, 226, 236, 268
AluBI AGCT 4 cut(s) 305, 501, 546, 662
AluI AGCT 4 cut(s) 305, 501, 546, 662
Alw26I GTCTC 1 cut(s) 516
AlwNI CAGNNNCTG 1 cut(s) 278
Ama87I CYCGRG 1 cut(s) 298
AoxI GGCC 2 cut(s) 307, 324
ApeKI GCWGC 1 cut(s) 78
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AspLEI GCGC 3 cut(s) 31, 83, 277
AspS9I GGNCC 1 cut(s) 308
AsuC2I CCSGG 2 cut(s) 299, 300
AvaI CYCGRG 1 cut(s) 298
BanI GGYRCC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 90
BccI CCATC 2 cut(s) 53, 632
BceAI ACGGC 1 cut(s) 416
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BciT130I CCWGG 1 cut(s) 157
BcnI CCSGG 2 cut(s) 299, 300
BcoDI GTCTC 1 cut(s) 516
BfmI CTRYAG 1 cut(s) 142
BfoI RGCGCY 2 cut(s) 32, 278
BfuAI ACCTGC 1 cut(s) 498
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
BmcAI AGTACT 1 cut(s) 101
Bme1390I CCNGG 3 cut(s) 157, 299, 300
BmeT110I CYCGRG 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 308
BmiI GGNNCC 2 cut(s) 241, 310
BmrFI CCNGG 3 cut(s) 157, 299, 300
BmsI GCATC 1 cut(s) 635
BplI GAGNNNNNCTC 2 cut(s) 496, 528
BpmI CTGGAG 1 cut(s) 651
BpuEI CTTGAG 1 cut(s) 523
BpuMI CCSGG 2 cut(s) 299, 300
BsaI GGTCTC 1 cut(s) 516
BsaJI CCNNGG 5 cut(s) 105, 155, 235, 298, 515
Bsc4I CCNNNNNNNGG 2 cut(s) 305, 411
Bse1I ACTGG 1 cut(s) 226
Bse3DI GCAATG 2 cut(s) 273, 426
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 5 cut(s) 105, 155, 235, 298, 515
BseGI GGATG 4 cut(s) 51, 165, 231, 643
BseLI CCNNNNNNNGG 2 cut(s) 305, 411
BseMI GCAATG 2 cut(s) 273, 426
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 1 cut(s) 226
BseXI GCAGC 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 2 cut(s) 309, 326
BshNI GGYRCC 1 cut(s) 239
BsiEI CGRYCG 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 298
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 2 cut(s) 281, 428
BslI CCNNNNNNNGG 2 cut(s) 305, 411
BsmAI GTCTC 1 cut(s) 516
BsmFI GGGAC 2 cut(s) 281, 428
BsnI GGCC 2 cut(s) 309, 326
Bso31I GGTCTC 1 cut(s) 516
BsoBI CYCGRG 1 cut(s) 298
Bsp143I GATC 2 cut(s) 84, 132
Bsp19I CCATGG 1 cut(s) 515
BspANI GGCC 2 cut(s) 309, 326
BspCNI CTCAG 1 cut(s) 109
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 241, 310
BspMI ACCTGC 1 cut(s) 498
BspT107I GGYRCC 1 cut(s) 239
BspTNI GGTCTC 1 cut(s) 516
BsrDI GCAATG 2 cut(s) 273, 426
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 5 cut(s) 105, 155, 235, 298, 515
BssMI GATC 2 cut(s) 84, 132
BssT1I CCWWGG 2 cut(s) 235, 515
Bst2UI CCWGG 1 cut(s) 157
Bst4CI ACNGT 3 cut(s) 222, 419, 567
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 96
BstDSI CCRYGG 2 cut(s) 105, 515
BstF5I GGATG 4 cut(s) 51, 165, 231, 643
BstFNI CGCG 1 cut(s) 83
BstH2I RGCGCY 2 cut(s) 32, 278
BstHHI GCGC 3 cut(s) 31, 83, 277
BstKTI GATC 2 cut(s) 87, 135
BstMAI GTCTC 1 cut(s) 516
BstMBI GATC 2 cut(s) 84, 132
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 78, 272
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 3 cut(s) 155, 297, 298
BstSFI CTRYAG 1 cut(s) 142
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 90
BsuRI GGCC 2 cut(s) 309, 326
BtgI CCRYGG 2 cut(s) 105, 515
BtsCI GGATG 4 cut(s) 51, 165, 231, 643
BveI ACCTGC 1 cut(s) 498
Cac8I GCNNGC 1 cut(s) 307
CaiI CAGNNNCTG 1 cut(s) 278
CfoI GCGC 3 cut(s) 31, 83, 277
Cfr13I GGNCC 1 cut(s) 308
Cfr9I CCCGGG 1 cut(s) 298
Csp6I GTAC 4 cut(s) 100, 229, 366, 568
CviAII CATG 2 cut(s) 411, 516
CviJI RGCY 9 cut(s) 197, 210, 305, 309, 326, 501, 546, 642, 662
CviKI_1 RGCY 9 cut(s) 197, 210, 305, 309, 326, 501, 546, 642, 662
CviQI GTAC 4 cut(s) 100, 229, 366, 568
DdeI CTNAG 1 cut(s) 96
DpnI GATC 2 cut(s) 86, 134
DpnII GATC 2 cut(s) 84, 132
Eco130I CCWWGG 2 cut(s) 235, 515
Eco31I GGTCTC 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 2 cut(s) 235, 515
EcoT22I ATGCAT 1 cut(s) 628
ErhI CCWWGG 2 cut(s) 235, 515
FaeI CATG 2 cut(s) 414, 519
FaiI YATR 6 cut(s) 76, 293, 412, 517, 645, 667
FaqI GGGAC 2 cut(s) 281, 428
FatI CATG 2 cut(s) 410, 515
Fnu4HI GCNGC 1 cut(s) 79
FokI GGATG 4 cut(s) 38, 172, 218, 650
Fsp4HI GCNGC 1 cut(s) 79
GlaI GCGC 3 cut(s) 30, 82, 276
GluI GCNGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 651
HaeII RGCGCY 2 cut(s) 32, 278
HaeIII GGCC 2 cut(s) 309, 326
HapII CCGG 1 cut(s) 299
HhaI GCGC 3 cut(s) 31, 83, 277
Hin1II CATG 2 cut(s) 414, 519
Hin6I GCGC 3 cut(s) 29, 81, 275
HinP1I GCGC 3 cut(s) 29, 81, 275
HinfI GANTC 5 cut(s) 7, 89, 119, 138, 339
HpaII CCGG 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 6 cut(s) 118, 124, 137, 261, 338, 584
Hpy188III TCNNGA 4 cut(s) 130, 190, 436, 630
Hpy8I GTNNAC 1 cut(s) 112
Hpy99I CGWCG 2 cut(s) 22, 325
HpyAV CCTTC 2 cut(s) 196, 323
HpyCH4III ACNGT 3 cut(s) 222, 419, 567
HpyCH4V TGCA 4 cut(s) 78, 266, 563, 626
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 272
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 2 cut(s) 414, 519
HspAI GCGC 3 cut(s) 29, 81, 275
Kzo9I GATC 2 cut(s) 84, 132
LmnI GCTCC 2 cut(s) 172, 302
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 635
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 86, 134
MboI GATC 2 cut(s) 84, 132
MboII GAAGA 1 cut(s) 40
MluCI AATT 1 cut(s) 244
MlyI GAGTC 2 cut(s) 98, 132
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 5 cut(s) 65, 105, 381, 392, 472
Mph1103I ATGCAT 1 cut(s) 628
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 3 cut(s) 157, 299, 300
MvaI CCWGG 1 cut(s) 157
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 78, 272
NciI CCSGG 2 cut(s) 299, 300
NcoI CCATGG 1 cut(s) 515
NdeII GATC 2 cut(s) 84, 132
NlaIII CATG 2 cut(s) 414, 519
NlaIV GGNNCC 2 cut(s) 241, 310
NsiI ATGCAT 1 cut(s) 628
PfeI GAWTC 3 cut(s) 7, 119, 339
PkrI GCNGC 1 cut(s) 80
Ple19I CGATCG 1 cut(s) 87
PleI GAGTC 2 cut(s) 97, 132
PpsI GAGTC 2 cut(s) 97, 132
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 2 cut(s) 241, 310
PspPI GGNCC 1 cut(s) 308
PstNI CAGNNNCTG 1 cut(s) 278
PvuI CGATCG 1 cut(s) 87
RsaI GTAC 4 cut(s) 101, 230, 367, 569
RsaNI GTAC 4 cut(s) 100, 229, 366, 568
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 2 cut(s) 84, 132
Sau96I GGNCC 1 cut(s) 308
ScaI AGTACT 1 cut(s) 101
SchI GAGTC 2 cut(s) 98, 132
ScrFI CCNGG 3 cut(s) 157, 299, 300
SetI ASST 6 cut(s) 241, 307, 503, 512, 548, 664
SfaNI GCATC 1 cut(s) 635
SfcI CTRYAG 1 cut(s) 142
SmaI CCCGGG 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 502
SmoI CTYRAG 1 cut(s) 502
Sse9I AATT 1 cut(s) 244
StyD4I CCNGG 3 cut(s) 155, 297, 298
StyI CCWWGG 2 cut(s) 235, 515
TaaI ACNGT 3 cut(s) 222, 419, 567
TaqI TCGA 4 cut(s) 87, 129, 189, 557
TasI AATT 1 cut(s) 244
TatI WGTACW 3 cut(s) 99, 228, 567
TfiI GAWTC 3 cut(s) 7, 119, 339
TseI GCWGC 1 cut(s) 78
TspDTI ATGAA 2 cut(s) 40, 618
TspGWI ACGGA 2 cut(s) 94, 191
TspMI CCCGGG 1 cut(s) 298
XmaI CCCGGG 1 cut(s) 298
ZrmI AGTACT 1 cut(s) 101
Zsp2I ATGCAT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.