pycom11g14120

mRNA-decapping enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0002391
Physical Location & Seq
Forward (+)
13909542 .. 13913741
4200 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1116 bp
ATGTCGCAGAACGGGAAATTGACGCCGAATCTGGACCAGCAGAGCACCAAGCTTCTGAATCTGACGGTTCTGCAGCGAATCGACCCCTTCGTCGAGGAAATTCTCATCACCTCCACTCACGTCACCTTCTACGAGTTCAACACTGACCTCAGCGAATGGAGTCGCAAGGACGTTGAAGGATCGCTCTTCGTGGTCAAGAGGAATGCGCAACCTCGGTTTCAGTTCATTGTGATGAACCGGCGGAATACTGCAAGTAAAATTTGGTGGAGGATCGATCGTTTGGGAGATTTTGAATTTGAAGTCCAACATCCATATCTATTGTATCGAAATGCGGCTCGAGAGGTCAATGGCATTTGGTTCTACAATCCAAGTGAATGTGAGGAGGTGGCAAATCTTTTTAGCAGGATTCTTAGTGCATATTCCAAGGTGCCTCAAAAGTCAATGGTATCACCAACAAAGAGTGAGTTTGAGGAACTGGAAGAAGTCCCAAGCATGGTTGTTATGGATGGTCCTTTGGAGCCATCATCATCAACTGCCTCTCATGTCACAGACGTTCCAGATGACCCAGCTTTTGTGAACTTCTTCAGTACGGCTATGACTATTGTGACTTCTTCAACTACAGCAATTACCGGACAGCCTTACCAGTCATCTTCGACAGTCTCTCTAACTTCTCATCCAGTTGGTGTTGCCCCTTCAAGTATTCCTGGCATGCAAATACCATCTGCTCCACTGTTATCGTCTACAACTTTATCCTCTTACCTTGACCTCCCTGAATCCCGTAACACCACCAACTTGGCCAGTAATCTTGTAAAGCCATCCTCTTTTTTTGTTCATCCTTCCTCTTCAGCAACAACCATGCCACCTGTCTCTGCATCAATCCCTGCTGCTCCTCTTCTTCAACCTGCTGTAAGTGTGCAACGTCCATATGGTGCTCCTCTTTTACAACCTTTTCCACCACCAGCTCCTCCACCGTCTCTCACTCCTGCTTCTTTCCCGACTCCGAACTATGGGCCAGTTAACAGAGATAAAGTACGAAATGCACTCATGCTGCTTGTACAGGATAATCAATTCATTGACATGGTATACGGAGCACTCCAGAAGGCACCCCACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DCP1

Protein Analysis

372

Amino Acids

40.89

Weight (kDa)

5.57

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCP1 PF06058 17 - 134 1.2e-39 Dcp1-like decapping family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
Acc16I TGCGCA 1 cut(s) 207
Acc36I ACCTGC 1 cut(s) 910
AccB1I GGYRCC 2 cut(s) 427, 1102
AccI GTMKAC 2 cut(s) 740, 1083
AciI CCGC 2 cut(s) 241, 332
AclWI GGATC 2 cut(s) 187, 278
AcoI YGGCCR 1 cut(s) 795
AcsI RAATTY 3 cut(s) 99, 258, 293
AcuI CTGAAG 2 cut(s) 568, 828
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 3 cut(s) 589, 1032, 1056
AfiI CCNNNNNNNGG 2 cut(s) 493, 1007
AgsI TTSAA 7 cut(s) 139, 176, 293, 299, 615, 696, 899
AjiI CACGTC 1 cut(s) 121
AjnI CCWGG 1 cut(s) 703
AluBI AGCT 3 cut(s) 52, 569, 962
AluI AGCT 3 cut(s) 52, 569, 962
Alw21I GWGCWC 3 cut(s) 47, 934, 1093
Alw26I GTCTC 3 cut(s) 664, 871, 978
AlwI GGATC 2 cut(s) 187, 278
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 2 cut(s) 795, 1010
ApeKI GCWGC 3 cut(s) 73, 884, 1048
ApoI RAATTY 3 cut(s) 99, 258, 293
ArsI GACNNNNNNTTYG 2 cut(s) 554, 586
Asp700I GAANNNNTTC 1 cut(s) 581
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 3 cut(s) 34, 509, 1010
AsuHPI GGTGA 3 cut(s) 100, 115, 441
AvaI CYCGRG 1 cut(s) 336
AvaII GGWCC 2 cut(s) 34, 509
BalI TGGCCA 1 cut(s) 797
BanI GGYRCC 2 cut(s) 427, 1102
Bbv12I GWGCWC 3 cut(s) 47, 934, 1093
BbvCI CCTCAGC 1 cut(s) 149
BbvI GCAGC 3 cut(s) 85, 871, 1035
BccI CCATC 4 cut(s) 500, 529, 727, 823
BceAI ACGGC 1 cut(s) 606
BciT130I CCWGG 1 cut(s) 705
BcoDI GTCTC 3 cut(s) 664, 871, 978
BfmI CTRYAG 2 cut(s) 71, 618
BfuAI ACCTGC 1 cut(s) 910
BisI GCNGC 4 cut(s) 74, 333, 885, 1049
BlsI GCNGC 4 cut(s) 75, 334, 886, 1050
Bme1390I CCNGG 1 cut(s) 705
Bme18I GGWCC 2 cut(s) 34, 509
BmeT110I CYCGRG 1 cut(s) 336
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 3 cut(s) 34, 509, 1010
BmiI GGNNCC 3 cut(s) 429, 519, 1104
BmrFI CCNGG 1 cut(s) 705
BmsI GCATC 1 cut(s) 881
BpmI CTGGAG 1 cut(s) 1079
Bpu10I CCTNAGC 1 cut(s) 149
Bsa29I ATCGAT 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 212, 423
BsaWI WCCGGW 1 cut(s) 629
Bsc4I CCNNNNNNNGG 2 cut(s) 493, 1007
Bse118I RCCGGY 1 cut(s) 237
Bse1I ACTGG 5 cut(s) 480, 643, 677, 798, 1013
BseBI CCWGG 1 cut(s) 705
BseCI ATCGAT 1 cut(s) 273
BseDI CCNNGG 2 cut(s) 212, 423
BseGI GGATG 5 cut(s) 307, 511, 673, 815, 832
BseLI CCNNNNNNNGG 2 cut(s) 493, 1007
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 5 cut(s) 480, 643, 677, 798, 1013
BseRI GAGGAG 4 cut(s) 395, 879, 924, 954
BseXI GCAGC 3 cut(s) 85, 871, 1035
BseYI CCCAGC 1 cut(s) 565
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 2 cut(s) 797, 1012
BshNI GGYRCC 2 cut(s) 427, 1102
BshVI ATCGAT 1 cut(s) 273
BsiEI CGRYCG 1 cut(s) 277
BsiHKAI GWGCWC 3 cut(s) 47, 934, 1093
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 2 cut(s) 238, 630
BslFI GGGAC 1 cut(s) 470
BslI CCNNNNNNNGG 2 cut(s) 493, 1007
BsmAI GTCTC 3 cut(s) 664, 871, 978
BsmBI CGTCTC 1 cut(s) 978
BsmFI GGGAC 1 cut(s) 470
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 2 cut(s) 797, 1012
BsoBI CYCGRG 1 cut(s) 336
Bsp1286I GDGCHC 3 cut(s) 47, 934, 1093
Bsp1407I TGTACA 1 cut(s) 1054
Bsp143I GATC 3 cut(s) 179, 270, 274
BspACI CCGC 2 cut(s) 241, 332
BspANI GGCC 2 cut(s) 797, 1012
BspCNI CTCAG 1 cut(s) 162
BspDI ATCGAT 1 cut(s) 273
BspLI GGNNCC 3 cut(s) 429, 519, 1104
BspMAI CTGCAG 1 cut(s) 75
BspMI ACCTGC 1 cut(s) 910
BspPI GGATC 2 cut(s) 187, 278
BspQI GCTCTTC 1 cut(s) 191
BspT107I GGYRCC 2 cut(s) 427, 1102
BsrFI RCCGGY 1 cut(s) 237
BsrGI TGTACA 1 cut(s) 1054
BsrI ACTGG 5 cut(s) 480, 643, 677, 798, 1013
BssAI RCCGGY 1 cut(s) 237
BssECI CCNNGG 2 cut(s) 212, 423
BssMI GATC 3 cut(s) 179, 270, 274
BssNAI GTATAC 1 cut(s) 1084
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 1 cut(s) 423
Bst1107I GTATAC 1 cut(s) 1084
Bst2UI CCWGG 1 cut(s) 705
Bst4CI ACNGT 4 cut(s) 67, 658, 732, 972
Bst6I CTCTTC 3 cut(s) 191, 847, 897
BstACI GRCGYC 1 cut(s) 23
BstAUI TGTACA 1 cut(s) 1054
BstC8I GCNNGC 1 cut(s) 710
BstDEI CTNAG 2 cut(s) 149, 410
BstF5I GGATG 5 cut(s) 307, 511, 673, 815, 832
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 3 cut(s) 182, 273, 277
BstMAI GTCTC 3 cut(s) 664, 871, 978
BstMBI GATC 3 cut(s) 179, 270, 274
BstMCI CGRYCG 1 cut(s) 277
BstNI CCWGG 1 cut(s) 705
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 1 cut(s) 703
BstSFI CTRYAG 2 cut(s) 71, 618
BstV1I GCAGC 3 cut(s) 85, 871, 1035
BstXI CCANNNNNNTGG 1 cut(s) 793
BstZ17I GTATAC 1 cut(s) 1084
Bsu15I ATCGAT 1 cut(s) 273
BsuRI GGCC 2 cut(s) 797, 1012
BsuTUI ATCGAT 1 cut(s) 273
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 5 cut(s) 307, 511, 673, 815, 832
BtsIMutI CAGTG 2 cut(s) 141, 728
BveI ACCTGC 1 cut(s) 910
Cac8I GCNNGC 1 cut(s) 710
CfoI GCGC 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 237
Cfr13I GGNCC 3 cut(s) 34, 509, 1010
ClaI ATCGAT 1 cut(s) 273
CseI GACGC 1 cut(s) 31
Csp6I GTAC 3 cut(s) 588, 1031, 1055
CviAII CATG 6 cut(s) 493, 542, 709, 856, 1045, 1078
CviQI GTAC 3 cut(s) 588, 1031, 1055
DdeI CTNAG 2 cut(s) 149, 410
DpnI GATC 3 cut(s) 181, 272, 276
DpnII GATC 3 cut(s) 179, 270, 274
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
EaeI YGGCCR 1 cut(s) 795
Eam1104I CTCTTC 3 cut(s) 191, 847, 897
EarI CTCTTC 3 cut(s) 191, 847, 897
EciI GGCGGA 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 423
Eco47I GGWCC 2 cut(s) 34, 509
Eco57I CTGAAG 2 cut(s) 568, 828
Eco88I CYCGRG 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 703
EcoT14I CCWWGG 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 423
Esp3I CGTCTC 1 cut(s) 978
FaeI CATG 6 cut(s) 496, 545, 712, 859, 1048, 1081
FaqI GGGAC 1 cut(s) 470
FatI CATG 6 cut(s) 492, 541, 708, 855, 1044, 1077
FauNDI CATATG 1 cut(s) 925
FblI GTMKAC 2 cut(s) 740, 1083
Fnu4HI GCNGC 4 cut(s) 74, 333, 885, 1049
FokI GGATG 5 cut(s) 294, 518, 660, 802, 819
Fsp4HI GCNGC 4 cut(s) 74, 333, 885, 1049
FspI TGCGCA 1 cut(s) 207
GlaI GCGC 1 cut(s) 207
GluI GCNGC 4 cut(s) 74, 333, 885, 1049
GsaI CCCAGC 1 cut(s) 569
GsuI CTGGAG 1 cut(s) 1079
HaeIII GGCC 2 cut(s) 797, 1012
HapII CCGG 2 cut(s) 238, 630
HgaI GACGC 1 cut(s) 31
HhaI GCGC 1 cut(s) 208
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 6 cut(s) 496, 545, 712, 859, 1048, 1081
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HincII GTYRAC 1 cut(s) 1018
HindII GTYRAC 1 cut(s) 1018
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 7 cut(s) 28, 58, 78, 160, 406, 773, 997
HpaI GTTAAC 1 cut(s) 1018
HpaII CCGG 2 cut(s) 238, 630
HphI GGTGA 3 cut(s) 100, 115, 441
Hpy166II GTNNAC 4 cut(s) 577, 741, 1018, 1084
Hpy188I TCNGA 3 cut(s) 57, 63, 1002
Hpy188III TCNNGA 6 cut(s) 32, 196, 338, 557, 994, 1096
Hpy8I GTNNAC 4 cut(s) 577, 741, 1018, 1084
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 6 cut(s) 97, 136, 170, 702, 846, 1093
HpyCH4III ACNGT 4 cut(s) 67, 658, 732, 972
HpyCH4IV ACGT 4 cut(s) 120, 171, 552, 919
HpyCH4V TGCA 7 cut(s) 73, 251, 416, 712, 872, 916, 1040
HpyF3I CTNAG 2 cut(s) 149, 410
HpySE526I ACGT 4 cut(s) 120, 171, 552, 919
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 6 cut(s) 496, 545, 712, 859, 1048, 1081
HspAI GCGC 1 cut(s) 206
KspAI GTTAAC 1 cut(s) 1018
Kzo9I GATC 3 cut(s) 179, 270, 274
LguI GCTCTTC 1 cut(s) 191
LmnI GCTCC 6 cut(s) 517, 730, 892, 937, 967, 1088
Lsp1109I GCAGC 3 cut(s) 85, 871, 1035
LweI GCATC 1 cut(s) 881
MaeII ACGT 4 cut(s) 120, 171, 552, 919
MaeIII GTNAC 4 cut(s) 121, 544, 604, 779
MalI GATC 3 cut(s) 181, 272, 276
MboI GATC 3 cut(s) 179, 270, 274
MboII GAAGA 8 cut(s) 178, 491, 574, 603, 642, 834, 884, 887
MhlI GDGCHC 3 cut(s) 47, 934, 1093
MlsI TGGCCA 1 cut(s) 797
MluCI AATT 6 cut(s) 17, 99, 258, 293, 624, 1067
MluNI TGGCCA 1 cut(s) 797
MlyI GAGTC 2 cut(s) 169, 991
MmeI TCCRAC 1 cut(s) 328
Mox20I TGGCCA 1 cut(s) 797
MroXI GAANNNNTTC 1 cut(s) 581
MscI TGGCCA 1 cut(s) 797
MseI TTAA 1 cut(s) 1017
MslI CAYNNNNRTG 2 cut(s) 230, 1076
Msp20I TGGCCA 1 cut(s) 797
MspI CCGG 2 cut(s) 238, 630
MspR9I CCNGG 1 cut(s) 705
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 1 cut(s) 705
NdeI CATATG 1 cut(s) 925
NdeII GATC 3 cut(s) 179, 270, 274
NlaIII CATG 6 cut(s) 496, 545, 712, 859, 1048, 1081
NlaIV GGNNCC 3 cut(s) 429, 519, 1104
NmuCI GTSAC 3 cut(s) 121, 544, 604
NsbI TGCGCA 1 cut(s) 207
NspI RCATGY 1 cut(s) 712
PaeI GCATGC 1 cut(s) 712
PaeR7I CTCGAG 1 cut(s) 336
PciSI GCTCTTC 1 cut(s) 191
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PctI GAATGC 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 581
PfeI GAWTC 5 cut(s) 28, 58, 78, 406, 773
PkrI GCNGC 4 cut(s) 75, 334, 886, 1050
Ple19I CGATCG 1 cut(s) 277
PleI GAGTC 2 cut(s) 168, 991
PpsI GAGTC 2 cut(s) 168, 991
Psp6I CCWGG 1 cut(s) 703
PspFI CCCAGC 1 cut(s) 565
PspGI CCWGG 1 cut(s) 703
PspN4I GGNNCC 3 cut(s) 429, 519, 1104
PspPI GGNCC 3 cut(s) 34, 509, 1010
PstI CTGCAG 1 cut(s) 75
PvuI CGATCG 1 cut(s) 277
RsaI GTAC 3 cut(s) 589, 1032, 1056
RsaNI GTAC 3 cut(s) 588, 1031, 1055
RseI CAYNNNNRTG 2 cut(s) 230, 1076
SapI GCTCTTC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 1017
SatI GCNGC 4 cut(s) 74, 333, 885, 1049
Sau3AI GATC 3 cut(s) 179, 270, 274
Sau96I GGNCC 3 cut(s) 34, 509, 1010
SchI GAGTC 2 cut(s) 169, 991
ScrFI CCNGG 1 cut(s) 705
SduI GDGCHC 3 cut(s) 47, 934, 1093
SfaNI GCATC 1 cut(s) 881
SfcI CTRYAG 2 cut(s) 71, 618
Sfr274I CTCGAG 1 cut(s) 336
SinI GGWCC 2 cut(s) 34, 509
SlaI CTCGAG 1 cut(s) 336
SmiMI CAYNNNNRTG 2 cut(s) 230, 1076
SmlI CTYRAG 1 cut(s) 336
SmoI CTYRAG 1 cut(s) 336
SphI GCATGC 1 cut(s) 712
Sse9I AATT 6 cut(s) 17, 99, 258, 293, 624, 1067
SsiI CCGC 2 cut(s) 241, 332
StyD4I CCNGG 1 cut(s) 703
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 4 cut(s) 67, 658, 732, 972
TaiI ACGT 4 cut(s) 123, 174, 555, 922
TaqI TCGA 6 cut(s) 81, 93, 273, 325, 337, 653
TasI AATT 6 cut(s) 17, 99, 258, 293, 624, 1067
TatI WGTACW 1 cut(s) 1054
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 5 cut(s) 28, 58, 78, 406, 773
Tru1I TTAA 1 cut(s) 1017
Tru9I TTAA 1 cut(s) 1017
TscAI CASTG 2 cut(s) 148, 735
TseFI GTSAC 3 cut(s) 121, 544, 604
TseI GCWGC 3 cut(s) 73, 884, 1048
Tsp45I GTSAC 3 cut(s) 121, 544, 604
TspDTI ATGAA 4 cut(s) 214, 248, 821, 1060
TspGWI ACGGA 1 cut(s) 1101
TspRI CASTG 2 cut(s) 148, 735
VpaK11BI GGWCC 2 cut(s) 34, 509
XapI RAATTY 3 cut(s) 99, 258, 293
XceI RCATGY 1 cut(s) 712
XhoI CTCGAG 1 cut(s) 336
XmiI GTMKAC 2 cut(s) 740, 1083
XmnI GAANNNNTTC 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.