pycom11g27160

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003052
Physical Location & Seq
Reverse (-)
29503983 .. 29504890
908 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 564 bp
ATGAGCAAATTATTCATACCTAAATATTATTACGATTTAGAAGATAATTGCGATCGAAACAAAGCTGCAATGGCGAGTAACACTGTCGAGAACTCGAAGCAAGTAATGGTGGTTGCTATGGACGAGAGCGACCACAGCACGTACGCGCTCGAATGGACTCTCAGTCACTTCTTTATCCCCTATGCATCAAACCCTGTTTTCAAGCTCGTCGTCGTCCATGCCAAGCCCCCTCCTCCCGCCATGGCCCTTGTCGGACCTGGAGGAGCTAAAGTTTTGCCAATTCTGGAGGCAGACTTACAGAAGATAGCCATGCGAGTTGCCGAGAAGGCGAAGAAAATTTGCGCCAGTAAACAGGTGAATGATGTGGTGGTGGAGTTGGTGGCTGGGGATGCTCGAAACGTTCTCTGTGAGACTGTAGAAAAACACAAGGCATCCATCTTGGTTTCTGGAAGCCATGGCTATGGAGCTATCAAAAGGGCGGTCCTAGGCAGCGTAAGCGATTATTGCGCTCATCATGCTCACTGCACTGTGATGATTGTGAAGAGGCCGAAAATTAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

188

Amino Acids

20.45

Weight (kDa)

8.89

Isoelectric Point (pI)

30.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 36 - 181 5.9e-26 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 146
AciI CCGC 2 cut(s) 237, 479
AclI AACGTT 1 cut(s) 399
AcsI RAATTY 1 cut(s) 336
AfaI GTAC 1 cut(s) 143
AgsI TTSAA 1 cut(s) 202
AhdI GACNNNNNGTC 1 cut(s) 162
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 4 cut(s) 65, 205, 266, 467
AluI AGCT 4 cut(s) 65, 205, 266, 467
Alw26I GTCTC 1 cut(s) 404
AoxI GGCC 2 cut(s) 243, 545
ApeKI GCWGC 2 cut(s) 65, 489
ApoI RAATTY 1 cut(s) 336
ArsI GACNNNNNNTTYG 2 cut(s) 465, 497
AspA2I CCTAGG 1 cut(s) 484
AspLEI GCGC 3 cut(s) 148, 344, 509
AspS9I GGNCC 3 cut(s) 244, 254, 481
AsuHPI GGTGA 1 cut(s) 367
AvaII GGWCC 2 cut(s) 254, 481
AvrII CCTAGG 1 cut(s) 484
BbvI GCAGC 2 cut(s) 52, 501
BccI CCATC 1 cut(s) 443
BciT130I CCWGG 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 404
BfaI CTAG 1 cut(s) 485
BfmI CTRYAG 1 cut(s) 414
BglI GCCNNNNNGGC 1 cut(s) 326
BisI GCNGC 2 cut(s) 66, 490
BlnI CCTAGG 1 cut(s) 484
BlsI GCNGC 2 cut(s) 67, 491
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 2 cut(s) 254, 481
BmeRI GACNNNNNGTC 1 cut(s) 162
BmgT120I GGNCC 3 cut(s) 244, 254, 481
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 3 cut(s) 194, 379, 440
BpmI CTGGAG 2 cut(s) 279, 305
BsaAI YACGTR 1 cut(s) 141
BsaJI CCNNGG 3 cut(s) 240, 454, 484
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bse1I ACTGG 1 cut(s) 345
Bse3DI GCAATG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 3 cut(s) 240, 454, 484
BseGI GGATG 2 cut(s) 394, 431
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 345
BseRI GAGGAG 2 cut(s) 222, 276
BseXI GCAGC 2 cut(s) 52, 501
BseYI CCCAGC 1 cut(s) 383
BsgI GTGCAG 1 cut(s) 508
Bsh1236I CGCG 1 cut(s) 146
Bsh1285I CGRYCG 1 cut(s) 55
BshFI GGCC 2 cut(s) 245, 547
BsiEI CGRYCG 1 cut(s) 55
BsiWI CGTACG 1 cut(s) 141
BsmAI GTCTC 1 cut(s) 404
BsnI GGCC 2 cut(s) 245, 547
Bsp143I GATC 1 cut(s) 52
Bsp19I CCATGG 2 cut(s) 240, 454
BspACI CCGC 2 cut(s) 237, 479
BspANI GGCC 2 cut(s) 245, 547
BspCNI CTCAG 1 cut(s) 174
BspFNI CGCG 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 1 cut(s) 345
BssECI CCNNGG 3 cut(s) 240, 454, 484
BssMI GATC 1 cut(s) 52
BssT1I CCWWGG 3 cut(s) 240, 454, 484
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 3 cut(s) 85, 415, 529
Bst6I CTCTTC 1 cut(s) 536
BstBAI YACGTR 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 161
BstDSI CCRYGG 2 cut(s) 240, 454
BstF5I GGATG 2 cut(s) 394, 431
BstFNI CGCG 1 cut(s) 146
BstHHI GCGC 3 cut(s) 148, 344, 509
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 1 cut(s) 52
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 7 cut(s) 71, 135, 326, 389, 495, 504, 515
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 256
BstSFI CTRYAG 1 cut(s) 414
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 2 cut(s) 52, 501
BstXI CCANNNNNNTGG 1 cut(s) 461
BsuRI GGCC 2 cut(s) 245, 547
BtgI CCRYGG 2 cut(s) 240, 454
BtsCI GGATG 2 cut(s) 394, 431
BtsI GCAGTG 1 cut(s) 520
BtsIMutI CAGTG 3 cut(s) 81, 520, 525
CfoI GCGC 3 cut(s) 148, 344, 509
Cfr13I GGNCC 3 cut(s) 244, 254, 481
Csp6I GTAC 1 cut(s) 142
CviAII CATG 5 cut(s) 218, 241, 310, 455, 515
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 1 cut(s) 161
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
DriI GACNNNNNGTC 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 536
Eam1105I GACNNNNNGTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 536
Eco130I CCWWGG 3 cut(s) 240, 454, 484
Eco47I GGWCC 2 cut(s) 254, 481
EcoRII CCWGG 1 cut(s) 256
EcoT14I CCWWGG 3 cut(s) 240, 454, 484
EcoT22I ATGCAT 1 cut(s) 187
ErhI CCWWGG 3 cut(s) 240, 454, 484
FaeI CATG 5 cut(s) 221, 244, 313, 458, 518
FaiI YATR 9 cut(s) 17, 119, 183, 219, 242, 311, 456, 462, 516
FatI CATG 5 cut(s) 217, 240, 309, 454, 514
FauI CCCGC 1 cut(s) 244
Fnu4HI GCNGC 2 cut(s) 66, 490
FokI GGATG 2 cut(s) 401, 418
Fsp4HI GCNGC 2 cut(s) 66, 490
FspBI CTAG 1 cut(s) 485
GlaI GCGC 3 cut(s) 147, 343, 508
GluI GCNGC 2 cut(s) 66, 490
GsaI CCCAGC 1 cut(s) 387
GsuI CTGGAG 2 cut(s) 279, 305
HaeIII GGCC 2 cut(s) 245, 547
HhaI GCGC 3 cut(s) 148, 344, 509
Hin1II CATG 5 cut(s) 221, 244, 313, 458, 518
Hin6I GCGC 3 cut(s) 146, 342, 507
HinP1I GCGC 3 cut(s) 146, 342, 507
HinfI GANTC 1 cut(s) 157
HphI GGTGA 1 cut(s) 367
Hpy166II GTNNAC 1 cut(s) 350
Hpy188I TCNGA 1 cut(s) 254
Hpy188III TCNNGA 3 cut(s) 88, 284, 447
Hpy8I GTNNAC 1 cut(s) 350
Hpy99I CGWCG 2 cut(s) 212, 215
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 3 cut(s) 85, 415, 529
HpyCH4IV ACGT 2 cut(s) 140, 399
HpyCH4V TGCA 3 cut(s) 68, 185, 525
HpyF10VI GCNNNNNNNGC 7 cut(s) 71, 135, 326, 389, 495, 504, 515
HpyF3I CTNAG 1 cut(s) 161
HpySE526I ACGT 2 cut(s) 140, 399
Hsp92II CATG 5 cut(s) 221, 244, 313, 458, 518
HspAI GCGC 3 cut(s) 146, 342, 507
Kzo9I GATC 1 cut(s) 52
LmnI GCTCC 2 cut(s) 263, 464
LpnPI CCDG 8 cut(s) 207, 243, 269, 270, 338, 358, 369, 432
Lsp1109I GCAGC 2 cut(s) 52, 501
LweI GCATC 3 cut(s) 194, 379, 440
MaeI CTAG 1 cut(s) 485
MaeII ACGT 2 cut(s) 140, 399
MaeIII GTNAC 2 cut(s) 77, 164
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 4 cut(s) 53, 313, 343, 553
MluCI AATT 5 cut(s) 8, 46, 279, 336, 552
MlyI GAGTC 1 cut(s) 151
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 5 cut(s) 240, 243, 254, 280, 537
Mph1103I ATGCAT 1 cut(s) 187
MseI TTAA 1 cut(s) 555
MslI CAYNNNNRTG 2 cut(s) 459, 530
MspR9I CCNGG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 258
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 7 cut(s) 71, 135, 326, 389, 495, 504, 515
NcoI CCATGG 2 cut(s) 240, 454
NdeII GATC 1 cut(s) 52
NlaIII CATG 5 cut(s) 221, 244, 313, 458, 518
NmeAIII GCCGAG 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 164
NsiI ATGCAT 1 cut(s) 187
Pfl23II CGTACG 1 cut(s) 141
PkrI GCNGC 2 cut(s) 67, 491
Ple19I CGATCG 1 cut(s) 55
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
Ppu21I YACGTR 1 cut(s) 141
Psp1406I AACGTT 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 256
PspFI CCCAGC 1 cut(s) 383
PspGI CCWGG 1 cut(s) 256
PspLI CGTACG 1 cut(s) 141
PspPI GGNCC 3 cut(s) 244, 254, 481
PvuI CGATCG 1 cut(s) 55
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
RseI CAYNNNNRTG 2 cut(s) 459, 530
SaqAI TTAA 1 cut(s) 555
SatI GCNGC 2 cut(s) 66, 490
Sau3AI GATC 1 cut(s) 52
Sau96I GGNCC 3 cut(s) 244, 254, 481
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 258
SetI ASST 9 cut(s) 22, 67, 143, 207, 259, 268, 357, 402, 469
SfaNI GCATC 3 cut(s) 194, 379, 440
SfcI CTRYAG 1 cut(s) 414
SinI GGWCC 2 cut(s) 254, 481
SmiMI CAYNNNNRTG 2 cut(s) 459, 530
Sse9I AATT 5 cut(s) 8, 46, 279, 336, 552
SsiI CCGC 2 cut(s) 237, 479
SspI AATATT 1 cut(s) 26
SspMI CTAG 1 cut(s) 485
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 3 cut(s) 240, 454, 484
TaaI ACNGT 3 cut(s) 85, 415, 529
TaiI ACGT 2 cut(s) 143, 402
TaqI TCGA 5 cut(s) 55, 87, 95, 150, 394
TasI AATT 5 cut(s) 8, 46, 279, 336, 552
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TscAI CASTG 3 cut(s) 88, 527, 532
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 2 cut(s) 65, 489
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 4
TspRI CASTG 3 cut(s) 88, 527, 532
VpaK11BI GGWCC 2 cut(s) 254, 481
XapI RAATTY 1 cut(s) 336
XmaJI CCTAGG 1 cut(s) 484
XspI CTAG 1 cut(s) 485
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.