pycom12g02930

mRNA-decapping enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0002391
Physical Location & Seq
Forward (+)
2628191 .. 2632385
4195 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1062 bp
ATGCTCAATCTCACGGTGCTGCAGAGAATCGACCCCTTCATCGAAGAGATTCTGATTACGGCCGCCCACGTTACCTTCTATGAATTCAACATCGAGAGCAATCAATGGAGTCGCAAGGATGTTGAAGGGTCTCTCTTTGTTGTTAAAAGGAATACTCAACCGCGGTTCCAGTTCATCGTTATGAATCGGCGCAATACAGATAACCTAGTGGAGAATCTCTTGGGAGATTTTGAGTATGAAGTTCAAGTTCCATATTTATTGTATAGAAATGCTGCCCAAGAAGTTAATGGCATTTGGTTTTATAATGCTCGTGAATGTGAGGAAGTTGCGAATCTCTTTACTAGGATTCTGAATGCATACTCAAAGGCTCCTCCCAAGTCCAAAATATCTTCAACCAAAAGTGAGTTTGAAGAACTTGAAGCAGTCCCATCCATGTTGGTCATGGAAGGGCCGTTGGAGCCATCATTGAATGCCCCTGCTGCCACTGATGCACCTGAAGATTCTTCCTTTATAAACTACCTGGCAGCAATGAATATTGGAAATAATGCTTCAGACGCAACAAATTCAAGACTGCCCTATCAGTCTACTGGAACTGTTCCTGCACCTTCTTATGCACCCAGTGCTGTTTCACCTCCTGCACCAACTCCACAAATACCACCACTTTCCCATTCAGTCCCATCTACGCCAACCCCCCTACATGGCTCCTCTGACCAAACCACCAGCAACAATCGGGTCGCTAATCTTATAAAGCCCTCTTCTTTCTTCCCTCTCCCTGCTTCCTCGCCTCCTTTGGTCGTACCACCTACCTCTTCATCTGTGCCATCTGCTGCTGCACTTCATCCACCCCTGAACCTGCAACGCCCTTATGGCACCCCAATGCTTCAACCCTTTCCACCACCAACGCCCCCACCATCTTTAACACCCAATTCTGTTCCTCCTGCTCCCAGTGACGGGCCTCTTGTTAGCAGAGAAAAAGTGCGAGAAGCACTTGTAATGCTTGTTCAGGACGATCAATTCATCGACATGATATGCCAAGCATTGCTGAAAGTGCACCATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DCP1

Protein Analysis

354

Amino Acids

38.68

Weight (kDa)

5.11

Isoelectric Point (pI)

61.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCP1 PF06058 2 - 114 6.1e-46 Dcp1-like decapping family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 303, 512, 746
Acc36I ACCTGC 1 cut(s) 861
AccB1I GGYRCC 1 cut(s) 869
AccI GTMKAC 1 cut(s) 584
AccII CGCG 1 cut(s) 163
AciI CCGC 3 cut(s) 63, 161, 163
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 2 cut(s) 83, 562
AcuI CTGAAG 2 cut(s) 516, 534
AdeI CACNNNGTG 1 cut(s) 620
AfaI GTAC 1 cut(s) 798
AfiI CCNNNNNNNGG 3 cut(s) 698, 950, 951
AgsI TTSAA 9 cut(s) 88, 125, 245, 393, 410, 419, 469, 567, 884
AjnI CCWGG 1 cut(s) 519
Alw21I GWGCWC 1 cut(s) 1053
Alw26I GTCTC 1 cut(s) 135
Alw44I GTGCAC 1 cut(s) 1049
AoxI GGCC 3 cut(s) 60, 449, 953
ApaLI GTGCAC 1 cut(s) 1049
ApeKI GCWGC 6 cut(s) 19, 272, 479, 524, 827, 830
ApoI RAATTY 2 cut(s) 83, 562
Asp700I GAANNNNTTC 1 cut(s) 48
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 2 cut(s) 449, 953
AsuHPI GGTGA 1 cut(s) 621
BaeGI GKGCMC 1 cut(s) 1053
BanI GGYRCC 1 cut(s) 869
BauI CACGAG 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 1053
BbvI GCAGC 6 cut(s) 6, 259, 466, 536, 814, 817
BccI CCATC 5 cut(s) 436, 469, 685, 829, 919
BceAI ACGGC 2 cut(s) 75, 436
BciT130I CCWGG 1 cut(s) 521
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 2 cut(s) 206, 342
BfmI CTRYAG 1 cut(s) 20
BfuAI ACCTGC 1 cut(s) 861
BglI GCCNNNNNGGC 1 cut(s) 867
BisI GCNGC 7 cut(s) 20, 63, 273, 480, 525, 828, 831
BlsI GCNGC 7 cut(s) 21, 64, 274, 481, 526, 829, 832
Bme1390I CCNGG 1 cut(s) 521
BmgT120I GGNCC 2 cut(s) 449, 953
BmiI GGNNCC 5 cut(s) 167, 369, 459, 703, 871
BmrFI CCNGG 1 cut(s) 521
BmrI ACTGGG 2 cut(s) 612, 939
BmsI GCATC 1 cut(s) 478
BmuI ACTGGG 2 cut(s) 612, 939
BsaI GGTCTC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 161
Bsc4I CCNNNNNNNGG 3 cut(s) 698, 950, 951
Bse1I ACTGG 4 cut(s) 169, 592, 618, 945
Bse3DI GCAATG 2 cut(s) 534, 1037
BseBI CCWGG 1 cut(s) 521
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 3 cut(s) 124, 428, 838
BseLI CCNNNNNNNGG 3 cut(s) 698, 950, 951
BseMI GCAATG 2 cut(s) 534, 1037
BseNI ACTGG 4 cut(s) 169, 592, 618, 945
BseRI GAGGAG 2 cut(s) 360, 694
BseSI GKGCMC 1 cut(s) 1053
BseX3I CGGCCG 1 cut(s) 60
BseXI GCAGC 6 cut(s) 6, 259, 466, 536, 814, 817
BsgI GTGCAG 3 cut(s) 585, 621, 816
Bsh1236I CGCG 1 cut(s) 163
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 3 cut(s) 62, 451, 955
BshNI GGYRCC 1 cut(s) 869
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 1053
BslFI GGGAC 2 cut(s) 410, 659
BslI CCNNNNNNNGG 3 cut(s) 698, 950, 951
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 2 cut(s) 410, 659
BsmI GAATGC 2 cut(s) 358, 475
BsnI GGCC 3 cut(s) 62, 451, 955
Bso31I GGTCTC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 1053
Bsp143I GATC 1 cut(s) 1009
BspACI CCGC 3 cut(s) 63, 161, 163
BspANI GGCC 3 cut(s) 62, 451, 955
BspFNI CGCG 1 cut(s) 163
BspLI GGNNCC 5 cut(s) 167, 369, 459, 703, 871
BspMAI CTGCAG 1 cut(s) 24
BspMI ACCTGC 1 cut(s) 861
BspT107I GGYRCC 1 cut(s) 869
BspTNI GGTCTC 1 cut(s) 135
BsrDI GCAATG 2 cut(s) 534, 1037
BsrI ACTGG 4 cut(s) 169, 592, 618, 945
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 1 cut(s) 1009
BssSI CACGAG 1 cut(s) 309
Bst2BI CACGAG 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 521
Bst4CI ACNGT 2 cut(s) 16, 595
Bst6I CTCTTC 3 cut(s) 39, 760, 814
BstAPI GCANNNNNTGC 1 cut(s) 620
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 3 cut(s) 124, 428, 838
BstFNI CGCG 1 cut(s) 163
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 1 cut(s) 1012
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 1 cut(s) 1009
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 7 cut(s) 457, 479, 488, 554, 620, 867, 1048
BstNI CCWGG 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 519
BstSFI CTRYAG 1 cut(s) 20
BstSLI GKGCMC 1 cut(s) 1053
BstUI CGCG 1 cut(s) 163
BstV1I GCAGC 6 cut(s) 6, 259, 466, 536, 814, 817
BstZI CGGCCG 1 cut(s) 60
BsuRI GGCC 3 cut(s) 62, 451, 955
BtgI CCRYGG 1 cut(s) 161
BtsCI GGATG 3 cut(s) 124, 428, 838
BtsIMutI CAGTG 3 cut(s) 483, 625, 952
BveI ACCTGC 1 cut(s) 861
CfoI GCGC 1 cut(s) 192
Cfr13I GGNCC 2 cut(s) 449, 953
Cfr42I CCGCGG 1 cut(s) 164
CseI GACGC 1 cut(s) 563
Csp6I GTAC 1 cut(s) 797
CviAII CATG 5 cut(s) 433, 442, 698, 1024, 1059
CviJI RGCY 7 cut(s) 62, 368, 451, 460, 702, 751, 955
CviKI_1 RGCY 7 cut(s) 62, 368, 451, 460, 702, 751, 955
CviQI GTAC 1 cut(s) 797
DpnI GATC 1 cut(s) 1011
DpnII GATC 1 cut(s) 1009
DraIII CACNNNGTG 1 cut(s) 620
EaeI YGGCCR 1 cut(s) 60
EagI CGGCCG 1 cut(s) 60
Eam1104I CTCTTC 3 cut(s) 39, 760, 814
EarI CTCTTC 3 cut(s) 39, 760, 814
EclXI CGGCCG 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 135
Eco52I CGGCCG 1 cut(s) 60
Eco57I CTGAAG 2 cut(s) 516, 534
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 519
EcoT22I ATGCAT 1 cut(s) 358
FaeI CATG 5 cut(s) 436, 445, 701, 1027, 1062
FaqI GGGAC 2 cut(s) 410, 659
FatI CATG 5 cut(s) 432, 441, 697, 1023, 1058
FblI GTMKAC 1 cut(s) 584
Fnu4HI GCNGC 7 cut(s) 20, 63, 273, 480, 525, 828, 831
FokI GGATG 3 cut(s) 131, 415, 825
Fsp4HI GCNGC 7 cut(s) 20, 63, 273, 480, 525, 828, 831
FspBI CTAG 2 cut(s) 206, 342
GlaI GCGC 1 cut(s) 191
GluI GCNGC 7 cut(s) 20, 63, 273, 480, 525, 828, 831
HaeIII GGCC 3 cut(s) 62, 451, 955
HgaI GACGC 1 cut(s) 563
HhaI GCGC 1 cut(s) 192
Hin1II CATG 5 cut(s) 436, 445, 701, 1027, 1062
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HinfI GANTC 8 cut(s) 27, 49, 109, 184, 214, 331, 346, 500
HphI GGTGA 1 cut(s) 621
Hpy166II GTNNAC 2 cut(s) 585, 1051
Hpy188I TCNGA 4 cut(s) 54, 351, 553, 709
Hpy188III TCNNGA 4 cut(s) 94, 311, 567, 1004
Hpy8I GTNNAC 2 cut(s) 585, 1051
HpyAV CCTTC 5 cut(s) 46, 85, 119, 440, 615
HpyCH4III ACNGT 2 cut(s) 16, 595
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 9 cut(s) 22, 356, 491, 602, 614, 638, 833, 856, 1051
HpyF10VI GCNNNNNNNGC 7 cut(s) 457, 479, 488, 554, 620, 867, 1048
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 5 cut(s) 436, 445, 701, 1027, 1062
HspAI GCGC 1 cut(s) 190
KspI CCGCGG 1 cut(s) 164
Kzo9I GATC 1 cut(s) 1009
LmnI GCTCC 4 cut(s) 373, 457, 707, 946
Lsp1109I GCAGC 6 cut(s) 6, 259, 466, 536, 814, 817
LweI GCATC 1 cut(s) 478
MaeI CTAG 2 cut(s) 206, 342
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 70, 947
MalI GATC 1 cut(s) 1011
MboI GATC 1 cut(s) 1009
MboII GAAGA 8 cut(s) 56, 381, 422, 495, 509, 747, 754, 801
MhlI GDGCHC 1 cut(s) 1053
MluCI AATT 4 cut(s) 83, 562, 925, 1013
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 435
Mph1103I ATGCAT 1 cut(s) 358
MroXI GAANNNNTTC 1 cut(s) 48
MseI TTAA 3 cut(s) 144, 285, 917
MslI CAYNNNNRTG 3 cut(s) 179, 875, 1022
MspA1I CMGCKG 1 cut(s) 163
MspR9I CCNGG 1 cut(s) 521
Mva1269I GAATGC 2 cut(s) 358, 475
MvaI CCWGG 1 cut(s) 521
MvnI CGCG 1 cut(s) 163
MwoI GCNNNNNNNGC 7 cut(s) 457, 479, 488, 554, 620, 867, 1048
NdeII GATC 1 cut(s) 1009
NlaIII CATG 5 cut(s) 436, 445, 701, 1027, 1062
NlaIV GGNNCC 5 cut(s) 167, 369, 459, 703, 871
NmuCI GTSAC 1 cut(s) 947
NsiI ATGCAT 1 cut(s) 358
PctI GAATGC 2 cut(s) 358, 475
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 7 cut(s) 27, 49, 184, 214, 331, 346, 500
PkrI GCNGC 7 cut(s) 21, 64, 274, 481, 526, 829, 832
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PsiI TTATAA 3 cut(s) 303, 512, 746
Psp6I CCWGG 1 cut(s) 519
PspGI CCWGG 1 cut(s) 519
PspN4I GGNNCC 5 cut(s) 167, 369, 459, 703, 871
PspPI GGNCC 2 cut(s) 449, 953
PsrI GAACNNNNNNTAC 2 cut(s) 984, 1016
PstI CTGCAG 1 cut(s) 24
RsaI GTAC 1 cut(s) 798
RsaNI GTAC 1 cut(s) 797
RseI CAYNNNNRTG 3 cut(s) 179, 875, 1022
SacII CCGCGG 1 cut(s) 164
SaqAI TTAA 3 cut(s) 144, 285, 917
SatI GCNGC 7 cut(s) 20, 63, 273, 480, 525, 828, 831
Sau3AI GATC 1 cut(s) 1009
Sau96I GGNCC 2 cut(s) 449, 953
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 521
SduI GDGCHC 1 cut(s) 1053
SfaNI GCATC 1 cut(s) 478
SfcI CTRYAG 1 cut(s) 20
Sfr303I CCGCGG 1 cut(s) 164
SgrBI CCGCGG 1 cut(s) 164
SmiMI CAYNNNNRTG 3 cut(s) 179, 875, 1022
Sse9I AATT 4 cut(s) 83, 562, 925, 1013
SsiI CCGC 3 cut(s) 63, 161, 163
SspI AATATT 1 cut(s) 535
SspMI CTAG 2 cut(s) 206, 342
StyD4I CCNGG 1 cut(s) 519
TaaI ACNGT 2 cut(s) 16, 595
TaiI ACGT 1 cut(s) 72
TaqI TCGA 4 cut(s) 30, 42, 93, 1020
TasI AATT 4 cut(s) 83, 562, 925, 1013
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 7 cut(s) 27, 49, 184, 214, 331, 346, 500
Tru1I TTAA 3 cut(s) 144, 285, 917
Tru9I TTAA 3 cut(s) 144, 285, 917
TscAI CASTG 3 cut(s) 490, 625, 952
TseFI GTSAC 1 cut(s) 947
TseI GCWGC 6 cut(s) 19, 272, 479, 524, 827, 830
Tsp45I GTSAC 1 cut(s) 947
TspDTI ATGAA 9 cut(s) 28, 96, 163, 197, 252, 545, 801, 827, 1006
TspRI CASTG 3 cut(s) 490, 625, 952
VneI GTGCAC 1 cut(s) 1049
XapI RAATTY 2 cut(s) 83, 562
XcmI CCANNNNNNNNNTGG 2 cut(s) 284, 439
XmiI GTMKAC 1 cut(s) 584
XmnI GAANNNNTTC 1 cut(s) 48
XspI CTAG 2 cut(s) 206, 342
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.