Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001742

Physical Location & Seq

Genomic Coordinates Reverse (-)

2778661 .. 2782738

Gene Structure 4078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

ATGATTCAAATTTACTTGGCAAAAATCTATTCTAAAATCTCGGTTACAAATAAAAAGAAATATCGTTTTACACTCGCTTCTTCTTCGTTTTGGCGGTGCCGGGAAAATTTGGCGCTTCCAAACGAGTGCAGTGCAAGGGAAATGGAAATTGAGGCAGAAGAAGAAGAGCAAGTCGCGACGGAGCCACCCAAAATTCACCGCCTAGAAGAGTCTGTGGTGAACCGAATCGCTGCCGGCGAGGTCATCCAACGCCCTGTCTCCGCCGTTAAAGAGCTCGTCGAGAACAGCCTCGACGCCCGCTCCTCCTCCATCAACGTCGTCGTCAAGGACGGCGGCCTCAAACTCATCCAAGTCTCCGATGACGGCCACGGCATCCGCTATGAGGACCTGCCGATACTGTGTGAGCGACACACGACGTCGAAACTCTCGGCGTTTGAGGACTTGCAGTCGATAAAGTCGATGGGGTTCAGAGGAGAAGCACTTGCCAGCATGACGTACGTAGCTCACGTCACCGTCACCACCATTACCAAAGGCCAGTTGCATGGTTATAGGGTATCTTATAAAGATGGTGTAATGGAGCACGAACCGAAGGCGTGCGCTGCTGTAAAAGGAACTCAAATAACGATTGAGAACTTATTCTATAACATGACCGCCCGGAGGAAGACACTACAAAATTCTGCTGATGATTATTCAAAGATTGTAGATTTGCTAAGCCGGTTTGCAATTCATCATATGAATGTTAGTTTCTCCTGCAGAAAGCATGGAGCTGCTAGAGCAGATGTTAATTCTGTTTCCACAGCATCAAGGATTGATGCAATTCGATCGGTGTATGGGGTGTCTGTTGCTCGCAGTCTGATGAAAATAGAAGCTTCAGATAAAGATCCTTCTAGCTCCGTTTTTCAGATGGATGGCTTTATCTCCGATTCAAACTATGTTGCCAAGAAGATAACCATGGTGCTTTATATAAATGATAGATTGGTTGATTGCACCGCTCTGAAGAGAGCTCTAGAAGTTGTTTATGCTGCCACATTGCCAAAAGCATCAAAACCCTTCATATACATGTCAATTATGTTACCACCTGAACATGTTGATGTGAATGTTCACCCAACAAAGAGAGAGGTAAGCCTTCTGAATCAGGAAATCATCATTGAGAAGATACAGTCAGTGGTTGAATGGAGGTTGAGAAGCTCCAATGAGACACAAACATTTCAGGAACAAGCAGTCGAACCTTCTTCATCCAGCCAAATGGTTTCAAGAAAGGATTCAAATCAGAACCCCTCACCATCTGCATCAAAATTACACAAGGTTCCAGTGAATAAAATGGTTAGAACGGATTCATCAAATCCTGCTGGTAGGTTGCATGTGTATTTGCAACCAGATCCTCGTGGCCATCTTGAAAGGAATGCTAGCTTGACAGCTGTTAGATCTTCTGTTAGACTAAGACGAAATCCAAAGGAAACCGCTGATCTGACCAGCCTTCAGGAGCTTATTGATGAAATTGATGGCAATTGTCATTCTGGTCTACTGGACATTGTGAGACACTGCACATACATTGGAATGGCAGATGATGTTTTTGCACTGCTTCAGCATGATACCCATCTTTATCTTGCAAATGTAGTGAACTTGAGTACCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000795 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0090304 GO:0090351 GO:0097159 GO:0099086 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko03460 ko05200 ko05210 ko05213 ko05226 map01524 map03430 map03460 map05200 map05210 map05213 map05226

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 Mlh1_C

Protein Analysis

546

Amino Acids

60.94

Weight (kDa)

8.26

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	84 - 147	7.2e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3	PF13589	87 - 189	2.4e-14	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DNA_mis_repair	PF01119	273 - 393	4.7e-29	DNA mismatch repair protein, C-terminal domain
Mlh1_C	PF16413	490 - 543	9.5e-11	DNA mismatch repair protein Mlh1 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09140 AT4G09140
fragaria_vesca	FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560
malus_domestica	MD12G1033300.v1.1 MD14G1034200.v1.1
prunus_persica	Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1
pyrus_communis	pycom12g01730 pycom12g03050
rosa_chinensis	RchiOBHm_Chr3g0494621 RchiOBHm_Chr7g0226931 RchiOBHm_Chr7g0226941
rosa_laevigata	RLG00000001681
rosa_multiflora	Rmu_co8507019.1_g000001 Rmu_sc0000356.1_g000011 Rmu_sc0002762.1_g000004 Rmu_sc0008925.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018710 Rroxscaffold_3G00232410 Rroxscaffold_6G00391010
rosa_rugosa	Rorug03G0266200 Rorug07G0240400
rosa_samantha	Rh3AG316100 Rh3BG351600 Rh3CG348200 Rh3DG350800 Rh7AG388700 Rh7BG374500 Rh7BG374700 Rh7CG407900 Rh7DG386700
rosa_wichuraiana	Rw3G027600 Rw7G032590 Rw7G032610 Rw7G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	561
AatII	GACGTC	1 cut(s)	419
Acc36I	ACCTGC	1 cut(s)	396
AccB1I	GGYRCC	1 cut(s)	96
AccBSI	CCGCTC	2 cut(s)	300, 992
AccI	GTMKAC	1 cut(s)	1522
AccII	CGCG	1 cut(s)	176
AciI	CCGC	9 cut(s)	94, 199, 261, 298, 333, 376, 651, 990, 1461
AclWI	GGATC	2 cut(s)	875, 1373
AcoI	YGGCCR	2 cut(s)	364, 1387
AcsI	RAATTY	4 cut(s)	9, 106, 192, 673
AcuI	CTGAAG	4 cut(s)	855, 1016, 1463, 1568
AcyI	GRCGYC	2 cut(s)	294, 416
AfaI	GTAC	2 cut(s)	497, 1630
AfiI	CCNNNNNNNGG	2 cut(s)	382, 657
AflIII	ACRYGT	2 cut(s)	1059, 1084
AgsI	TTSAA	7 cut(s)	8, 693, 927, 1172, 1254, 1266, 1397
AhdI	GACNNNNNGTC	1 cut(s)	445
AjiI	CACGTC	1 cut(s)	508
Alw21I	GWGCWC	3 cut(s)	276, 582, 1006
Alw26I	GTCTC	4 cut(s)	262, 358, 1190, 1531
AlwI	GGATC	2 cut(s)	875, 1373
AoxI	GGCC	4 cut(s)	334, 364, 532, 1387
ApeKI	GCWGC	4 cut(s)	230, 599, 767, 1022
ApoI	RAATTY	4 cut(s)	9, 106, 192, 673
Asp700I	GAANNNNTTC	3 cut(s)	635, 1261, 1333
AspLEI	GCGC	2 cut(s)	115, 599
AspS9I	GGNCC	1 cut(s)	385
AsuC2I	CCSGG	2 cut(s)	101, 655
AsuHPI	GGTGA	6 cut(s)	188, 229, 502, 508, 1094, 1272
AsuNHI	GCTAGC	1 cut(s)	1406
AvaII	GGWCC	1 cut(s)	385
BaeI	ACNNNNGTAYC	1 cut(s)	1612
BalI	TGGCCA	1 cut(s)	1389
BanI	GGYRCC	1 cut(s)	96
BanII	GRGCYC	2 cut(s)	276, 1006
BauI	CACGAG	1 cut(s)	1383
BbsI	GAAGAC	1 cut(s)	668
Bbv12I	GWGCWC	3 cut(s)	276, 582, 1006
BbvI	GCAGC	4 cut(s)	217, 586, 754, 1009
BccI	CCATC	9 cut(s)	317, 454, 560, 898, 902, 1291, 1398, 1496, 1605
BceAI	ACGGC	4 cut(s)	248, 346, 379, 385
BcgI	CGANNNNNNTGC	4 cut(s)	113, 147, 804, 838
BcnI	CCSGG	2 cut(s)	101, 655
BcoDI	GTCTC	4 cut(s)	262, 358, 1190, 1531
BfaI	CTAG	5 cut(s)	203, 771, 888, 1007, 1407
BfmI	CTRYAG	1 cut(s)	751
BfoI	RGCGCY	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	396
BglII	AGATCT	1 cut(s)	1424
BisI	GCNGC	5 cut(s)	231, 334, 600, 768, 1023
BlpI	GCTNAGC	1 cut(s)	710
BlsI	GCNGC	5 cut(s)	232, 335, 601, 769, 1024
Bme1390I	CCNGG	2 cut(s)	101, 655
Bme18I	GGWCC	1 cut(s)	385
BmeRI	GACNNNNNGTC	1 cut(s)	445
BmgBI	CACGTC	1 cut(s)	508
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	3 cut(s)	98, 183, 1308
BmrFI	CCNGG	2 cut(s)	101, 655
BmsI	GCATC	5 cut(s)	381, 802, 809, 1049, 1298
BmtI	GCTAGC	1 cut(s)	1410
BpiI	GAAGAC	1 cut(s)	668
Bpu1102I	GCTNAGC	1 cut(s)	710
BpuMI	CCSGG	2 cut(s)	101, 655
BsaAI	YACGTR	1 cut(s)	499
BsaBI	GATNNNNATC	3 cut(s)	879, 1266, 1596
BsaHI	GRCGYC	2 cut(s)	294, 416
BsaJI	CCNNGG	2 cut(s)	367, 951
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 657
Bse118I	RCCGGY	2 cut(s)	233, 714
Bse1I	ACTGG	3 cut(s)	535, 1310, 1530
Bse3DI	GCAATG	1 cut(s)	1028
Bse8I	GATNNNNATC	3 cut(s)	879, 1266, 1596
BseDI	CCNNGG	2 cut(s)	367, 951
BseGI	GGATG	5 cut(s)	243, 345, 372, 913, 1235
BseJI	GATNNNNATC	3 cut(s)	879, 1266, 1596
BseLI	CCNNNNNNNGG	2 cut(s)	382, 657
BseMI	GCAATG	1 cut(s)	1028
BseNI	ACTGG	3 cut(s)	535, 1310, 1530
BseRI	GAGGAG	3 cut(s)	292, 295, 486
BseXI	GCAGC	4 cut(s)	217, 586, 754, 1009
BsgI	GTGCAG	2 cut(s)	148, 1528
Bsh1236I	CGCG	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	824
BshFI	GGCC	4 cut(s)	336, 366, 534, 1389
BshNI	GGYRCC	1 cut(s)	96
BsiEI	CGRYCG	1 cut(s)	824
BsiHKAI	GWGCWC	3 cut(s)	276, 582, 1006
BsiSI	CCGG	4 cut(s)	100, 234, 655, 715
BsiWI	CGTACG	1 cut(s)	495
BslI	CCNNNNNNNGG	2 cut(s)	382, 657
BsmAI	GTCTC	4 cut(s)	262, 358, 1190, 1531
BsmI	GAATGC	1 cut(s)	1408
BsnI	GGCC	4 cut(s)	336, 366, 534, 1389
Bsp1286I	GDGCHC	3 cut(s)	276, 582, 1006
Bsp143I	GATC	5 cut(s)	821, 880, 1378, 1424, 1465
Bsp1720I	GCTNAGC	1 cut(s)	710
Bsp19I	CCATGG	1 cut(s)	951
Bsp68I	TCGCGA	1 cut(s)	176
BspACI	CCGC	9 cut(s)	94, 199, 261, 298, 333, 376, 651, 990, 1461
BspANI	GGCC	4 cut(s)	336, 366, 534, 1389
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	3 cut(s)	98, 183, 1308
BspMAI	CTGCAG	1 cut(s)	755
BspMI	ACCTGC	1 cut(s)	396
BspOI	GCTAGC	1 cut(s)	1410
BspPI	GGATC	2 cut(s)	875, 1373
BspQI	GCTCTTC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	96
BsrBI	CCGCTC	2 cut(s)	300, 992
BsrDI	GCAATG	1 cut(s)	1028
BsrFI	RCCGGY	2 cut(s)	233, 714
BsrI	ACTGG	3 cut(s)	535, 1310, 1530
BssAI	RCCGGY	2 cut(s)	233, 714
BssECI	CCNNGG	2 cut(s)	367, 951
BssMI	GATC	5 cut(s)	821, 880, 1378, 1424, 1465
BssNI	GRCGYC	2 cut(s)	294, 416
BssSI	CACGAG	1 cut(s)	1383
BssT1I	CCWWGG	1 cut(s)	951
Bst2BI	CACGAG	1 cut(s)	1383
Bst4CI	ACNGT	3 cut(s)	399, 514, 1161
Bst6I	CTCTTC	3 cut(s)	159, 201, 992
BstACI	GRCGYC	2 cut(s)	294, 416
BstBAI	YACGTR	1 cut(s)	499
BstC8I	GCNNGC	6 cut(s)	235, 298, 487, 595, 847, 1408
BstDEI	CTNAG	2 cut(s)	710, 1439
BstDSI	CCRYGG	2 cut(s)	367, 951
BstF5I	GGATG	5 cut(s)	243, 345, 372, 913, 1235
BstFNI	CGCG	1 cut(s)	176
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	2 cut(s)	115, 599
BstKTI	GATC	5 cut(s)	824, 883, 1381, 1427, 1468
BstMAI	GTCTC	4 cut(s)	262, 358, 1190, 1531
BstMBI	GATC	5 cut(s)	821, 880, 1378, 1424, 1465
BstMCI	CGRYCG	1 cut(s)	824
BstMWI	GCNNNNNNNGC	2 cut(s)	599, 773
BstNSI	RCATGY	3 cut(s)	1063, 1088, 1364
BstSCI	CCNGG	2 cut(s)	99, 653
BstSFI	CTRYAG	1 cut(s)	751
BstSNI	TACGTA	1 cut(s)	499
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	4 cut(s)	217, 586, 754, 1009
BstV2I	GAAGAC	1 cut(s)	668
BstX2I	RGATCY	3 cut(s)	880, 1378, 1424
BstXI	CCANNNNNNTGG	2 cut(s)	542, 1246
BstYI	RGATCY	3 cut(s)	880, 1378, 1424
BsuRI	GGCC	4 cut(s)	336, 366, 534, 1389
BtgI	CCRYGG	2 cut(s)	367, 951
BtrI	CACGTC	1 cut(s)	508
BtsCI	GGATG	5 cut(s)	243, 345, 372, 913, 1235
BtsI	GCAGTG	3 cut(s)	136, 1540, 1577
BtsIMutI	CAGTG	5 cut(s)	136, 1170, 1317, 1540, 1577
BtuMI	TCGCGA	1 cut(s)	176
BveI	ACCTGC	1 cut(s)	396
Cac8I	GCNNGC	6 cut(s)	235, 298, 487, 595, 847, 1408
CfoI	GCGC	2 cut(s)	115, 599
Cfr10I	RCCGGY	2 cut(s)	233, 714
Cfr13I	GGNCC	1 cut(s)	385
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	496, 1629
CviAII	CATG	9 cut(s)	490, 542, 646, 761, 952, 1060, 1085, 1361, 1589
CviQI	GTAC	2 cut(s)	496, 1629
DdeI	CTNAG	2 cut(s)	710, 1439
DpnI	GATC	5 cut(s)	823, 882, 1380, 1426, 1467
DpnII	GATC	5 cut(s)	821, 880, 1378, 1424, 1465
DriI	GACNNNNNGTC	1 cut(s)	445
EaeI	YGGCCR	2 cut(s)	364, 1387
Eam1104I	CTCTTC	3 cut(s)	159, 201, 992
Eam1105I	GACNNNNNGTC	1 cut(s)	445
EarI	CTCTTC	3 cut(s)	159, 201, 992
EciI	GGCGGA	1 cut(s)	250
Ecl136II	GAGCTC	2 cut(s)	274, 1004
Eco105I	TACGTA	1 cut(s)	499
Eco130I	CCWWGG	1 cut(s)	951
Eco24I	GRGCYC	2 cut(s)	276, 1006
Eco47I	GGWCC	1 cut(s)	385
Eco53kI	GAGCTC	2 cut(s)	274, 1004
Eco57I	CTGAAG	4 cut(s)	855, 1016, 1463, 1568
EcoICRI	GAGCTC	2 cut(s)	274, 1004
EcoO109I	RGGNCCY	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	951
EcoT38I	GRGCYC	2 cut(s)	276, 1006
ErhI	CCWWGG	1 cut(s)	951
FaeI	CATG	9 cut(s)	493, 545, 649, 764, 955, 1063, 1088, 1364, 1592
FatI	CATG	9 cut(s)	489, 541, 645, 760, 951, 1059, 1084, 1360, 1588
FauI	CCCGC	1 cut(s)	305
FauNDI	CATATG	1 cut(s)	732
FblI	GTMKAC	1 cut(s)	1522
Fnu4HI	GCNGC	5 cut(s)	231, 334, 600, 768, 1023
FokI	GGATG	5 cut(s)	230, 332, 359, 920, 1222
FriOI	GRGCYC	2 cut(s)	276, 1006
Fsp4HI	GCNGC	5 cut(s)	231, 334, 600, 768, 1023
FspBI	CTAG	5 cut(s)	203, 771, 888, 1007, 1407
GlaI	GCGC	2 cut(s)	114, 598
GluI	GCNGC	5 cut(s)	231, 334, 600, 768, 1023
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	4 cut(s)	336, 366, 534, 1389
HapII	CCGG	4 cut(s)	100, 234, 655, 715
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	2 cut(s)	115, 599
Hin1I	GRCGYC	2 cut(s)	294, 416
Hin1II	CATG	9 cut(s)	493, 545, 649, 764, 955, 1063, 1088, 1364, 1592
Hin6I	GCGC	2 cut(s)	113, 597
HinP1I	GCGC	2 cut(s)	113, 597
HindIII	AAGCTT	1 cut(s)	867
HinfI	GANTC	7 cut(s)	4, 209, 225, 923, 1132, 1262, 1334
HpaII	CCGG	4 cut(s)	100, 234, 655, 715
HphI	GGTGA	6 cut(s)	188, 229, 502, 508, 1094, 1272
Hpy166II	GTNNAC	4 cut(s)	220, 1102, 1523, 1621
Hpy188III	TCNNGA	8 cut(s)	175, 280, 1007, 1136, 1211, 1254, 1394, 1481
Hpy8I	GTNNAC	4 cut(s)	220, 1102, 1523, 1621
Hpy99I	CGWCG	7 cut(s)	181, 281, 296, 320, 323, 418, 421
HpyAV	CCTTC	6 cut(s)	583, 894, 1060, 1136, 1239, 1487
HpyCH4III	ACNGT	3 cut(s)	399, 514, 1161
HpyCH4IV	ACGT	5 cut(s)	315, 416, 494, 498, 507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	599, 773
HpyF3I	CTNAG	2 cut(s)	710, 1439
HpySE526I	ACGT	5 cut(s)	315, 416, 494, 498, 507
Hsp92I	GRCGYC	2 cut(s)	294, 416
Hsp92II	CATG	9 cut(s)	493, 545, 649, 764, 955, 1063, 1088, 1364, 1592
HspAI	GCGC	2 cut(s)	113, 597
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
Kzo9I	GATC	5 cut(s)	821, 880, 1378, 1424, 1465
LguI	GCTCTTC	1 cut(s)	159
LmnI	GCTCC	7 cut(s)	181, 305, 577, 764, 896, 1193, 1483
Lsp1109I	GCAGC	4 cut(s)	217, 586, 754, 1009
LweI	GCATC	5 cut(s)	381, 802, 809, 1049, 1298
MaeI	CTAG	5 cut(s)	203, 771, 888, 1007, 1407
MaeII	ACGT	5 cut(s)	315, 416, 494, 498, 507
MaeIII	GTNAC	4 cut(s)	43, 508, 514, 1071
MalI	GATC	5 cut(s)	823, 882, 1380, 1426, 1467
MbiI	CCGCTC	2 cut(s)	300, 992
MboI	GATC	5 cut(s)	821, 880, 1378, 1424, 1465
MfeI	CAATTG	1 cut(s)	1507
MflI	RGATCY	3 cut(s)	880, 1378, 1424
MhlI	GDGCHC	3 cut(s)	276, 582, 1006
MlsI	TGGCCA	1 cut(s)	1389
MluNI	TGGCCA	1 cut(s)	1389
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	271
Mox20I	TGGCCA	1 cut(s)	1389
MroNI	GCCGGC	1 cut(s)	233
MroXI	GAANNNNTTC	3 cut(s)	635, 1261, 1333
MscI	TGGCCA	1 cut(s)	1389
MseI	TTAA	2 cut(s)	267, 783
MslI	CAYNNNNRTG	4 cut(s)	735, 1058, 1089, 1556
Msp20I	TGGCCA	1 cut(s)	1389
MspA1I	CMGCKG	2 cut(s)	1418, 1463
MspI	CCGG	4 cut(s)	100, 234, 655, 715
MspR9I	CCNGG	2 cut(s)	101, 655
MunI	CAATTG	1 cut(s)	1507
Mva1269I	GAATGC	1 cut(s)	1408
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	599, 773
NaeI	GCCGGC	1 cut(s)	235
NciI	CCSGG	2 cut(s)	101, 655
NcoI	CCATGG	1 cut(s)	951
NdeI	CATATG	1 cut(s)	732
NdeII	GATC	5 cut(s)	821, 880, 1378, 1424, 1465
NgoMIV	GCCGGC	1 cut(s)	233
NheI	GCTAGC	1 cut(s)	1406
NlaIII	CATG	9 cut(s)	493, 545, 649, 764, 955, 1063, 1088, 1364, 1592
NlaIV	GGNNCC	3 cut(s)	98, 183, 1308
NmeAIII	GCCGAG	1 cut(s)	407
NmuCI	GTSAC	2 cut(s)	508, 514
NruI	TCGCGA	1 cut(s)	176
NspI	RCATGY	3 cut(s)	1063, 1088, 1364
PciI	ACATGT	2 cut(s)	1059, 1084
PciSI	GCTCTTC	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	3 cut(s)	234, 455, 504
PctI	GAATGC	1 cut(s)	1408
PdiI	GCCGGC	1 cut(s)	235
PdmI	GAANNNNTTC	3 cut(s)	635, 1261, 1333
PfeI	GAWTC	6 cut(s)	4, 225, 923, 1132, 1262, 1334
Pfl23II	CGTACG	1 cut(s)	495
PkrI	GCNGC	5 cut(s)	232, 335, 601, 769, 1024
Ple19I	CGATCG	1 cut(s)	824
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
Ppu21I	YACGTR	1 cut(s)	499
PpuMI	RGGWCCY	1 cut(s)	385
PscI	ACATGT	2 cut(s)	1059, 1084
PsiI	TTATAA	1 cut(s)	561
Psp124BI	GAGCTC	2 cut(s)	276, 1006
Psp5II	RGGWCCY	1 cut(s)	385
PspLI	CGTACG	1 cut(s)	495
PspN4I	GGNNCC	3 cut(s)	98, 183, 1308
PspPI	GGNCC	1 cut(s)	385
PspPPI	RGGWCCY	1 cut(s)	385
PstI	CTGCAG	1 cut(s)	755
PsuI	RGATCY	3 cut(s)	880, 1378, 1424
PvuI	CGATCG	1 cut(s)	824
PvuII	CAGCTG	1 cut(s)	1418
RruI	TCGCGA	1 cut(s)	176
RsaI	GTAC	2 cut(s)	497, 1630
RsaNI	GTAC	2 cut(s)	496, 1629
RseI	CAYNNNNRTG	4 cut(s)	735, 1058, 1089, 1556
SacI	GAGCTC	2 cut(s)	276, 1006
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	267, 783
SatI	GCNGC	5 cut(s)	231, 334, 600, 768, 1023
Sau3AI	GATC	5 cut(s)	821, 880, 1378, 1424, 1465
Sau96I	GGNCC	1 cut(s)	385
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	101, 655
SduI	GDGCHC	3 cut(s)	276, 582, 1006
SfaNI	GCATC	5 cut(s)	381, 802, 809, 1049, 1298
SfcI	CTRYAG	1 cut(s)	751
SinI	GGWCC	1 cut(s)	385
SmiMI	CAYNNNNRTG	4 cut(s)	735, 1058, 1089, 1556
SmlI	CTYRAG	1 cut(s)	1624
SmoI	CTYRAG	1 cut(s)	1624
SnaBI	TACGTA	1 cut(s)	499
SsiI	CCGC	9 cut(s)	94, 199, 261, 298, 333, 376, 651, 990, 1461
SspMI	CTAG	5 cut(s)	203, 771, 888, 1007, 1407
SstI	GAGCTC	2 cut(s)	276, 1006
StyD4I	CCNGG	2 cut(s)	99, 653
StyI	CCWWGG	1 cut(s)	951
TaaI	ACNGT	3 cut(s)	399, 514, 1161
TaiI	ACGT	5 cut(s)	318, 419, 497, 501, 510
TaqI	TCGA	7 cut(s)	279, 291, 419, 449, 458, 820, 1224
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	6 cut(s)	4, 225, 923, 1132, 1262, 1334
Tru1I	TTAA	2 cut(s)	267, 783
Tru9I	TTAA	2 cut(s)	267, 783
TscAI	CASTG	5 cut(s)	136, 1170, 1317, 1547, 1584
TseFI	GTSAC	2 cut(s)	508, 514
TseI	GCWGC	4 cut(s)	230, 599, 767, 1022
Tsp45I	GTSAC	2 cut(s)	508, 514
TspDTI	ATGAA	7 cut(s)	716, 749, 872, 1042, 1224, 1326, 1509
TspGWI	ACGGA	3 cut(s)	194, 883, 1346
TspRI	CASTG	5 cut(s)	136, 1170, 1317, 1547, 1584
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	4 cut(s)	9, 106, 192, 673
XbaI	TCTAGA	1 cut(s)	1006
XceI	RCATGY	3 cut(s)	1063, 1088, 1364
XmiI	GTMKAC	1 cut(s)	1522
XmnI	GAANNNNTTC	3 cut(s)	635, 1261, 1333
XspI	CTAG	5 cut(s)	203, 771, 888, 1007, 1407
ZraI	GACGTC	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.