Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003318

Physical Location & Seq

Genomic Coordinates Forward (+)

6345802 .. 6347625

Gene Structure 1824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAGTTTTACTCGTGTATTTTGGCTGCAGGCACTCACCTTCTATAAGTGCAAGAATTTGATGGTGAGGAACCTGAAAATTCAAGATGCACAACAAATTCATGTGTCTTTCCAGAAATGCATGAACGTTGAAGTTTCCAATCTCTCAATAACTGCACCAGAAAAAAGCCCCAACACCGACGGAATTCATGTTACAGACACTCAAAACATATTGATCACAAGCTGTGTTACAGCCACAGGTGATGATTGTCTTTCTATTGTAAATGGATCCAAATTGGTGCAAGCTTCGAACATAACCTGCGGATCAGGCCATGGTATCAGGTTGAATTTTGGTTTTCACAATGACCTCAGTATTGGAAGCTTGGGATCTGGAAACTCAACAGCGTATGTTTCGGATATTACAGTGAATGGAGCAAAACTTTATGGAACTACAAATGGAGTTCGGATCAAAACTTGGCAGTACAAAGTACATACAAAAACCAGCAAGGTGATATATATGCAGGGAGGATCAGGAAGTGCAAGCAACATCAGATTTCAGAACATTGAAATGCACAATGTTACCAACCCCATACTTATAGACCAATATTACTGTGACAGAAAGAAACCGTGCAAAGAACAGAGATCAGCGGTTGAAGTAAAAAATGTGGTGTACAAAAACATCAAAGGAACAAGTGCTTCAGATATTGCTATAAAATTCGATTGCAGCAAGAGCTTCCCTTGTCTGGGGATTATATTGCAAGATATTAACCTCCAACACGAAGGAAGGAAAACAGCTAAAGCTCTGTGCAACAATGTTAACGTGACTAGCATAGGTGTCTCTCTCTGTATCCGCGGAAGCCAAAATCCAATCCAAACCTTCGGACAATCCGATTCCGGCGTCTCTCAAAAAATCCCGGAACTACATAATCCCGTCGATTCTACATTTCCACCACGTTTCGTTTATTGGCGGGGAGCTTCTAGTGTTGTACATACAAAATTTGAATGGGAACTCCGGAATTTCCAGATCTGGGTAGGCATTGCTACGTCGCCGAGTGCCAGCAGATCGATTTCTTGCCCTTCACCTGCGATAGCTGCCATCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009830 GO:0009838 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010047 GO:0010227 GO:0016043 GO:0016787 GO:0016798 GO:0022411 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0044277 GO:0044464 GO:0045229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

361

Amino Acids

39.47

Weight (kDa)

9.22

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	11 - 268	1.5e-68	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41850
fragaria_vesca	FvH4_2g20930 FvH4_2g20930 FvH4_6g23580
malus_domestica	MD05G1192600.v1.1 MD10G1179100.v1.1 MD12G1077400.v1.1 MD12G1077600.v1.1
prunus_persica	Prupe.7G063900_v2.0.a1 Prupe.8G218900_v2.0.a1
pyrus_communis	pycom05g17960 pycom10g15530 pycom12g06230
rosa_chinensis	RchiOBHm_Chr3g0481691 RchiOBHm_Chr6g0287311
rosa_laevigata	RLG00000012502 RLG00000023383
rosa_multiflora	Rmu_sc0007029.1_g000032 Rmu_ssc0000267.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399870 Rroxscaffold_6G00400230 Rroxscaffold_7G00181550
rosa_rugosa	Rorug03G0193400 Rorug06G0186800 Rorug06G0186900
rosa_samantha	Rh3AG244500 Rh3BG279600 Rh3CG274700 Rh3DG271500 Rh6AG298300 Rh6BG303700 Rh6CG306100 Rh6CG312000 Rh6DG295600
rosa_wichuraiana	Rw3G021820 Rw6G025780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1069
Acc36I	ACCTGC	2 cut(s)	305, 1069
AccII	CGCG	1 cut(s)	831
AccIII	TCCGGA	1 cut(s)	990
AciI	CCGC	5 cut(s)	300, 626, 829, 831, 946
AclI	AACGTT	1 cut(s)	126
AclWI	GGATC	6 cut(s)	261, 274, 310, 373, 452, 514
AcsI	RAATTY	8 cut(s)	55, 78, 96, 183, 325, 692, 974, 994
AcuI	CTGAAG	1 cut(s)	660
AcyI	GRCGYC	1 cut(s)	876
AfaI	GTAC	4 cut(s)	461, 468, 650, 966
AfiI	CCNNNNNNNGG	3 cut(s)	721, 722, 1006
AgsI	TTSAA	6 cut(s)	83, 131, 325, 545, 632, 980
AluBI	AGCT	8 cut(s)	222, 284, 360, 711, 773, 779, 953, 1070
AluI	AGCT	8 cut(s)	222, 284, 360, 711, 773, 779, 953, 1070
Alw26I	GTCTC	2 cut(s)	820, 883
AlwI	GGATC	6 cut(s)	261, 274, 310, 373, 452, 514
Aor13HI	TCCGGA	1 cut(s)	990
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	3 cut(s)	25, 702, 1070
ApoI	RAATTY	8 cut(s)	55, 78, 96, 183, 325, 692, 974, 994
AsuC2I	CCSGG	1 cut(s)	893
AsuHPI	GGTGA	5 cut(s)	28, 76, 251, 499, 1050
AsuII	TTCGAA	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	266
BauI	CACGAG	1 cut(s)	12
BbvI	GCAGC	3 cut(s)	12, 714, 1057
BccI	CCATC	2 cut(s)	55, 1082
BciVI	GTATCC	1 cut(s)	836
BclI	TGATCA	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	893
BcoDI	GTCTC	2 cut(s)	820, 883
BfaI	CTAG	2 cut(s)	804, 957
BfmI	CTRYAG	1 cut(s)	26
BfuAI	ACCTGC	2 cut(s)	305, 1069
BfuI	GTATCC	1 cut(s)	836
BglII	AGATCT	1 cut(s)	1002
BisI	GCNGC	3 cut(s)	26, 703, 1071
BlsI	GCNGC	3 cut(s)	27, 704, 1072
Bme1390I	CCNGG	1 cut(s)	893
BmiI	GGNNCC	2 cut(s)	71, 268
BmrFI	CCNGG	1 cut(s)	893
BmsI	GCATC	1 cut(s)	76
BplI	GAGNNNNNCTC	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	893
Bsa29I	ATCGAT	1 cut(s)	1043
BsaHI	GRCGYC	1 cut(s)	876
BsaJI	CCNNGG	2 cut(s)	310, 829
BsaWI	WCCGGW	1 cut(s)	990
Bsc4I	CCNNNNNNNGG	3 cut(s)	721, 722, 1006
Bse3DI	GCAATG	1 cut(s)	1014
BseAI	TCCGGA	1 cut(s)	990
BseCI	ATCGAT	1 cut(s)	1043
BseDI	CCNNGG	2 cut(s)	310, 829
BseLI	CCNNNNNNNGG	3 cut(s)	721, 722, 1006
BseMI	GCAATG	1 cut(s)	1014
BseMII	CTCAG	1 cut(s)	361
BseXI	GCAGC	3 cut(s)	12, 714, 1057
BsgI	GTGCAG	1 cut(s)	138
Bsh1236I	CGCG	1 cut(s)	831
BshFI	GGCC	1 cut(s)	309
BshVI	ATCGAT	1 cut(s)	1043
BsiSI	CCGG	3 cut(s)	873, 893, 991
BslI	CCNNNNNNNGG	3 cut(s)	721, 722, 1006
BsmAI	GTCTC	2 cut(s)	820, 883
BsmBI	CGTCTC	1 cut(s)	883
BsnI	GGCC	1 cut(s)	309
Bsp119I	TTCGAA	1 cut(s)	287
Bsp13I	TCCGGA	1 cut(s)	990
Bsp1407I	TGTACA	2 cut(s)	648, 964
Bsp143I	GATC	9 cut(s)	213, 266, 302, 365, 444, 506, 620, 1002, 1040
Bsp19I	CCATGG	1 cut(s)	310
BspACI	CCGC	5 cut(s)	300, 626, 829, 831, 946
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	1 cut(s)	360
BspDI	ATCGAT	1 cut(s)	1043
BspEI	TCCGGA	1 cut(s)	990
BspFNI	CGCG	1 cut(s)	831
BspLI	GGNNCC	2 cut(s)	71, 268
BspMAI	CTGCAG	1 cut(s)	30
BspMI	ACCTGC	2 cut(s)	305, 1069
BspPI	GGATC	6 cut(s)	261, 274, 310, 373, 452, 514
BspT104I	TTCGAA	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	1014
BsrGI	TGTACA	2 cut(s)	648, 964
BssECI	CCNNGG	2 cut(s)	310, 829
BssMI	GATC	9 cut(s)	213, 266, 302, 365, 444, 506, 620, 1002, 1040
BssNI	GRCGYC	1 cut(s)	876
BssSI	CACGAG	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	310
Bst2BI	CACGAG	1 cut(s)	12
Bst4CI	ACNGT	3 cut(s)	403, 590, 606
BstACI	GRCGYC	1 cut(s)	876
BstAUI	TGTACA	2 cut(s)	648, 964
BstBI	TTCGAA	1 cut(s)	287
BstC8I	GCNNGC	4 cut(s)	30, 282, 520, 1036
BstDEI	CTNAG	1 cut(s)	347
BstDSI	CCRYGG	2 cut(s)	310, 829
BstFNI	CGCG	1 cut(s)	831
BstKTI	GATC	9 cut(s)	216, 269, 305, 368, 447, 509, 623, 1005, 1043
BstMAI	GTCTC	2 cut(s)	820, 883
BstMBI	GATC	9 cut(s)	213, 266, 302, 365, 444, 506, 620, 1002, 1040
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 708, 1070
BstSCI	CCNGG	1 cut(s)	891
BstSFI	CTRYAG	1 cut(s)	26
BstUI	CGCG	1 cut(s)	831
BstV1I	GCAGC	3 cut(s)	12, 714, 1057
BstX2I	RGATCY	3 cut(s)	266, 365, 1002
BstYI	RGATCY	3 cut(s)	266, 365, 1002
Bsu15I	ATCGAT	1 cut(s)	1043
BsuI	GTATCC	1 cut(s)	836
BsuRI	GGCC	1 cut(s)	309
BsuTUI	ATCGAT	1 cut(s)	1043
BtgI	CCRYGG	2 cut(s)	310, 829
BtsIMutI	CAGTG	1 cut(s)	408
BveI	ACCTGC	2 cut(s)	305, 1069
Cac8I	GCNNGC	4 cut(s)	30, 282, 520, 1036
Cfr42I	CCGCGG	1 cut(s)	832
ClaI	ATCGAT	1 cut(s)	1043
CseI	GACGC	1 cut(s)	865
Csp6I	GTAC	4 cut(s)	460, 467, 649, 965
CviAII	CATG	4 cut(s)	101, 121, 188, 311
CviQI	GTAC	4 cut(s)	460, 467, 649, 965
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	9 cut(s)	215, 268, 304, 367, 446, 508, 622, 1004, 1042
DpnII	GATC	9 cut(s)	213, 266, 302, 365, 444, 506, 620, 1002, 1040
Eco130I	CCWWGG	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	660
EcoRI	GAATTC	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	310
EcoT22I	ATGCAT	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	310
Esp3I	CGTCTC	1 cut(s)	883
FaeI	CATG	4 cut(s)	104, 124, 191, 314
FatI	CATG	4 cut(s)	100, 120, 187, 310
FauI	CCCGC	1 cut(s)	939
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	3 cut(s)	26, 703, 1071
Fsp4HI	GCNGC	3 cut(s)	26, 703, 1071
FspBI	CTAG	2 cut(s)	804, 957
GluI	GCNGC	3 cut(s)	26, 703, 1071
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	3 cut(s)	873, 893, 991
HgaI	GACGC	1 cut(s)	865
Hin1I	GRCGYC	1 cut(s)	876
Hin1II	CATG	4 cut(s)	104, 124, 191, 314
HincII	GTYRAC	1 cut(s)	796
HindII	GTYRAC	1 cut(s)	796
HindIII	AAGCTT	2 cut(s)	282, 358
HinfI	GANTC	2 cut(s)	869, 914
HpaI	GTTAAC	1 cut(s)	796
HpaII	CCGG	3 cut(s)	873, 893, 991
HphI	GGTGA	5 cut(s)	28, 76, 251, 499, 1050
Hpy166II	GTNNAC	2 cut(s)	649, 796
Hpy188I	TCNGA	7 cut(s)	394, 444, 530, 537, 679, 860, 868
Hpy188III	TCNNGA	6 cut(s)	83, 112, 369, 510, 991, 1000
Hpy8I	GTNNAC	2 cut(s)	649, 796
Hpy99I	CGWCG	3 cut(s)	182, 914, 1027
HpyAV	CCTTC	5 cut(s)	49, 752, 756, 865, 1065
HpyCH4III	ACNGT	3 cut(s)	403, 590, 606
HpyCH4IV	ACGT	4 cut(s)	126, 798, 931, 1022
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 708, 1070
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	4 cut(s)	126, 798, 931, 1022
Hsp92I	GRCGYC	1 cut(s)	876
Hsp92II	CATG	4 cut(s)	104, 124, 191, 314
Kpn2I	TCCGGA	1 cut(s)	990
Ksp22I	TGATCA	1 cut(s)	213
KspAI	GTTAAC	1 cut(s)	796
KspI	CCGCGG	1 cut(s)	832
Kzo9I	GATC	9 cut(s)	213, 266, 302, 365, 444, 506, 620, 1002, 1040
LmnI	GCTCC	2 cut(s)	410, 950
Lsp1109I	GCAGC	3 cut(s)	12, 714, 1057
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	2 cut(s)	804, 957
MaeII	ACGT	4 cut(s)	126, 798, 931, 1022
MaeIII	GTNAC	5 cut(s)	190, 226, 556, 590, 799
MalI	GATC	9 cut(s)	215, 268, 304, 367, 446, 508, 622, 1004, 1042
MboI	GATC	9 cut(s)	213, 266, 302, 365, 444, 506, 620, 1002, 1040
MflI	RGATCY	3 cut(s)	266, 365, 1002
MluCI	AATT	9 cut(s)	55, 78, 96, 183, 272, 325, 692, 974, 994
MmeI	TCCRAC	1 cut(s)	775
MnlI	CCTC	4 cut(s)	60, 356, 497, 758
Mph1103I	ATGCAT	1 cut(s)	122
MroI	TCCGGA	1 cut(s)	990
MseI	TTAA	2 cut(s)	744, 795
MslI	CAYNNNNRTG	1 cut(s)	545
MspA1I	CMGCKG	2 cut(s)	626, 831
MspI	CCGG	3 cut(s)	873, 893, 991
MspR9I	CCNGG	1 cut(s)	893
MvnI	CGCG	1 cut(s)	831
MwoI	GCNNNNNNNGC	3 cut(s)	306, 708, 1070
NciI	CCSGG	1 cut(s)	893
NcoI	CCATGG	1 cut(s)	310
NdeII	GATC	9 cut(s)	213, 266, 302, 365, 444, 506, 620, 1002, 1040
NlaIII	CATG	4 cut(s)	104, 124, 191, 314
NlaIV	GGNNCC	2 cut(s)	71, 268
NmeAIII	GCCGAG	1 cut(s)	1053
NmuCI	GTSAC	2 cut(s)	590, 799
NsiI	ATGCAT	1 cut(s)	122
NspV	TTCGAA	1 cut(s)	287
PaqCI	CACCTGC	1 cut(s)	1069
PcsI	WCGNNNNNNNCGW	1 cut(s)	864
PfeI	GAWTC	2 cut(s)	869, 914
PfoI	TCCNGGA	1 cut(s)	891
PkrI	GCNGC	3 cut(s)	27, 704, 1072
Psp1406I	AACGTT	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	71, 268
PstI	CTGCAG	1 cut(s)	30
PsuI	RGATCY	3 cut(s)	266, 365, 1002
RsaI	GTAC	4 cut(s)	461, 468, 650, 966
RsaNI	GTAC	4 cut(s)	460, 467, 649, 965
RseI	CAYNNNNRTG	1 cut(s)	545
SacII	CCGCGG	1 cut(s)	832
SaqAI	TTAA	2 cut(s)	744, 795
SatI	GCNGC	3 cut(s)	26, 703, 1071
Sau3AI	GATC	9 cut(s)	213, 266, 302, 365, 444, 506, 620, 1002, 1040
ScrFI	CCNGG	1 cut(s)	893
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	1 cut(s)	26
Sfr303I	CCGCGG	1 cut(s)	832
SfuI	TTCGAA	1 cut(s)	287
SgrBI	CCGCGG	1 cut(s)	832
SmiMI	CAYNNNNRTG	1 cut(s)	545
Sse9I	AATT	9 cut(s)	55, 78, 96, 183, 272, 325, 692, 974, 994
SsiI	CCGC	5 cut(s)	300, 626, 829, 831, 946
SspI	AATATT	1 cut(s)	584
SspMI	CTAG	2 cut(s)	804, 957
StyD4I	CCNGG	1 cut(s)	891
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	3 cut(s)	403, 590, 606
TaiI	ACGT	4 cut(s)	129, 801, 934, 1025
TaqI	TCGA	4 cut(s)	287, 696, 912, 1043
TasI	AATT	9 cut(s)	55, 78, 96, 183, 272, 325, 692, 974, 994
TatI	WGTACW	4 cut(s)	459, 466, 648, 964
TfiI	GAWTC	2 cut(s)	869, 914
Tru1I	TTAA	2 cut(s)	744, 795
Tru9I	TTAA	2 cut(s)	744, 795
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	2 cut(s)	590, 799
TseI	GCWGC	3 cut(s)	25, 702, 1070
Tsp45I	GTSAC	2 cut(s)	590, 799
TspDTI	ATGAA	3 cut(s)	89, 137, 176
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	408
XapI	RAATTY	8 cut(s)	55, 78, 96, 183, 325, 692, 974, 994
XspI	CTAG	2 cut(s)	804, 957
Zsp2I	ATGCAT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.