pycom12g19480

Universal stress protein A-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0002806
Physical Location & Seq
Reverse (-)
21307412 .. 21308551
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 534 bp
ATGACTGACGTGGCAGAAAGCGAAAGGAGGATCCTCGTGGCCGTCGACGAAGGCGAGGAGAGCATGCATGCGCTGTCGTGGTGCCTGAAGAACATTGTCGCGCAAAATTCCAAAGATACCCTTATCCTACTCTACGCCAAGCCCCCGCGAGCAGTGTTCACCGCTCTGGACGGCACAGGTAGGAGGAGCGAGGATCCATCCGGGTATTTGTTTTCGTCTGAGACTTGGGCGGCAATGGAGAAGTACGCTGCTGATGTGGCGGACTGCGTGATGGAGAAGGCCAAGAAGACGTGCAGGGACCTCCACCAGGATGTTAAGGTGGAGACGAAAGTAGAGGACGGAGATCCGAGGGATGTCATTTGCCAGATGGCAGAGCAGCTTCGTGCTGACGTGTTGGTCGTGGGAAGCCACGGTTACGGCGGCATCAAAAGGGCTTTCCTTGGGAGTGTGAGCAATCACTGTGCACAGAATGTCAAGTGCCCCGTCTTGATTGTCAAGAAGCCAAAAACAAGTGCCGGGAGCAAAAGTGAATAA

Protein Analysis

178

Amino Acids

19.36

Weight (kDa)

6.11

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 9 - 166 1.7e-32 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 395
AccB1I GGYRCC 1 cut(s) 81
AccBSI CCGCTC 1 cut(s) 164
AccI GTMKAC 1 cut(s) 45
AccII CGCG 2 cut(s) 101, 148
AciI CCGC 5 cut(s) 146, 162, 230, 260, 420
AclWI GGATC 5 cut(s) 25, 38, 188, 201, 338
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 107
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 307
AflIII ACRYGT 1 cut(s) 390
AjiI CACGTC 3 cut(s) 10, 291, 391
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 1 cut(s) 379
AluI AGCT 1 cut(s) 379
Alw21I GWGCWC 1 cut(s) 466
Alw26I GTCTC 2 cut(s) 215, 317
Alw44I GTGCAC 1 cut(s) 462
AlwI GGATC 5 cut(s) 25, 38, 188, 201, 338
AoxI GGCC 2 cut(s) 39, 279
ApaLI GTGCAC 1 cut(s) 462
ApeKI GCWGC 2 cut(s) 248, 376
ApoI RAATTY 1 cut(s) 106
AspLEI GCGC 2 cut(s) 73, 103
AspS9I GGNCC 1 cut(s) 298
AsuC2I CCSGG 2 cut(s) 202, 517
AsuHPI GGTGA 1 cut(s) 151
AvaII GGWCC 1 cut(s) 298
BaeGI GKGCMC 2 cut(s) 466, 482
BamHI GGATCC 2 cut(s) 30, 193
BanI GGYRCC 1 cut(s) 81
BauI CACGAG 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 2 cut(s) 235, 388
BccI CCATC 3 cut(s) 205, 265, 361
BceAI ACGGC 3 cut(s) 26, 187, 433
BciT130I CCWGG 1 cut(s) 308
BcnI CCSGG 2 cut(s) 202, 517
BcoDI GTCTC 2 cut(s) 215, 317
BisI GCNGC 4 cut(s) 231, 249, 377, 421
BlsI GCNGC 4 cut(s) 232, 250, 378, 422
Bme1390I CCNGG 3 cut(s) 202, 308, 517
Bme18I GGWCC 1 cut(s) 298
BmgBI CACGTC 3 cut(s) 10, 291, 391
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 4 cut(s) 32, 83, 195, 299
BmrFI CCNGG 3 cut(s) 202, 308, 517
BmsI GCATC 1 cut(s) 432
BpiI GAAGAC 1 cut(s) 293
BpuMI CCSGG 2 cut(s) 202, 517
BsaJI CCNNGG 3 cut(s) 347, 409, 439
BsaXI ACNNNNNCTCC 1 cut(s) 511
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse3DI GCAATG 1 cut(s) 240
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 3 cut(s) 347, 409, 439
BseGI GGATG 3 cut(s) 197, 316, 358
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 210
BseRI GAGGAG 2 cut(s) 71, 199
BseSI GKGCMC 2 cut(s) 466, 482
BseXI GCAGC 2 cut(s) 235, 388
BsgI GTGCAG 1 cut(s) 313
Bsh1236I CGCG 2 cut(s) 101, 148
BshFI GGCC 2 cut(s) 41, 281
BshNI GGYRCC 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 466
BsiSI CCGG 2 cut(s) 201, 516
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 1 cut(s) 307
BsmAI GTCTC 2 cut(s) 215, 317
BsmBI CGTCTC 1 cut(s) 317
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 2 cut(s) 41, 281
Bsp1286I GDGCHC 2 cut(s) 466, 482
Bsp143I GATC 3 cut(s) 30, 193, 343
BspACI CCGC 5 cut(s) 146, 162, 230, 260, 420
BspANI GGCC 2 cut(s) 41, 281
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 2 cut(s) 101, 148
BspLI GGNNCC 4 cut(s) 32, 83, 195, 299
BspPI GGATC 5 cut(s) 25, 38, 188, 201, 338
BspT107I GGYRCC 1 cut(s) 81
BsrBI CCGCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 240
BssECI CCNNGG 3 cut(s) 347, 409, 439
BssMI GATC 3 cut(s) 30, 193, 343
BssSI CACGAG 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 439
Bst2BI CACGAG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 2 cut(s) 413, 461
BstC8I GCNNGC 3 cut(s) 65, 69, 150
BstDEI CTNAG 1 cut(s) 219
BstDSI CCRYGG 1 cut(s) 409
BstENI CCTNNNNNAGG 1 cut(s) 305
BstF5I GGATG 3 cut(s) 197, 316, 358
BstFNI CGCG 2 cut(s) 101, 148
BstHHI GCGC 2 cut(s) 73, 103
BstKTI GATC 3 cut(s) 33, 196, 346
BstMAI GTCTC 2 cut(s) 215, 317
BstMBI GATC 3 cut(s) 30, 193, 343
BstMWI GCNNNNNNNGC 2 cut(s) 60, 257
BstNI CCWGG 1 cut(s) 308
BstNSI RCATGY 2 cut(s) 67, 71
BstSCI CCNGG 3 cut(s) 200, 306, 515
BstSLI GKGCMC 2 cut(s) 466, 482
BstUI CGCG 2 cut(s) 101, 148
BstV1I GCAGC 2 cut(s) 235, 388
BstV2I GAAGAC 1 cut(s) 293
BstX2I RGATCY 3 cut(s) 30, 193, 343
BstYI RGATCY 3 cut(s) 30, 193, 343
BsuRI GGCC 2 cut(s) 41, 281
BtgI CCRYGG 1 cut(s) 409
BtrI CACGTC 3 cut(s) 10, 291, 391
BtsCI GGATG 3 cut(s) 197, 316, 358
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 2 cut(s) 159, 457
Cac8I GCNNGC 3 cut(s) 65, 69, 150
CfoI GCGC 2 cut(s) 73, 103
Cfr13I GGNCC 1 cut(s) 298
Csp6I GTAC 1 cut(s) 244
CviAII CATG 2 cut(s) 64, 68
CviJI RGCY 7 cut(s) 41, 142, 281, 379, 408, 434, 502
CviKI_1 RGCY 7 cut(s) 41, 142, 281, 379, 408, 434, 502
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 219
DpnI GATC 3 cut(s) 32, 195, 345
DpnII GATC 3 cut(s) 30, 193, 343
DrdI GACNNNNNNGTC 1 cut(s) 395
DseDI GACNNNNNNGTC 1 cut(s) 395
EaeI YGGCCR 1 cut(s) 39
EciI GGCGGA 1 cut(s) 275
Eco130I CCWWGG 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 107
EcoNI CCTNNNNNAGG 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 439
EcoT22I ATGCAT 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 439
Esp3I CGTCTC 1 cut(s) 317
FaeI CATG 2 cut(s) 67, 71
FaiI YATR 2 cut(s) 65, 69
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FaqI GGGAC 1 cut(s) 311
FatI CATG 2 cut(s) 63, 67
FauI CCCGC 1 cut(s) 153
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 4 cut(s) 231, 249, 377, 421
FokI GGATG 3 cut(s) 184, 323, 365
Fsp4HI GCNGC 4 cut(s) 231, 249, 377, 421
GlaI GCGC 2 cut(s) 72, 102
GluI GCNGC 4 cut(s) 231, 249, 377, 421
HaeIII GGCC 2 cut(s) 41, 281
HapII CCGG 2 cut(s) 201, 516
HhaI GCGC 2 cut(s) 73, 103
Hin1II CATG 2 cut(s) 67, 71
Hin6I GCGC 2 cut(s) 71, 101
HinP1I GCGC 2 cut(s) 71, 101
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HpaII CCGG 2 cut(s) 201, 516
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 3 cut(s) 46, 159, 464
Hpy188I TCNGA 2 cut(s) 220, 348
Hpy188III TCNNGA 3 cut(s) 167, 487, 496
Hpy8I GTNNAC 3 cut(s) 46, 159, 464
Hpy99I CGWCG 2 cut(s) 47, 50
HpyAV CCTTC 2 cut(s) 44, 271
HpyCH4III ACNGT 2 cut(s) 413, 461
HpyCH4IV ACGT 3 cut(s) 9, 290, 390
HpyCH4V TGCA 3 cut(s) 67, 294, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 257
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 3 cut(s) 9, 290, 390
Hsp92II CATG 2 cut(s) 67, 71
HspAI GCGC 2 cut(s) 71, 101
Kzo9I GATC 3 cut(s) 30, 193, 343
LmnI GCTCC 2 cut(s) 186, 519
LpnPI CCDG 9 cut(s) 98, 152, 162, 214, 280, 293, 320, 377, 529
Lsp1109I GCAGC 2 cut(s) 235, 388
LweI GCATC 1 cut(s) 432
MaeII ACGT 3 cut(s) 9, 290, 390
MaeIII GTNAC 1 cut(s) 413
MalI GATC 3 cut(s) 32, 195, 345
MbiI CCGCTC 1 cut(s) 164
MboI GATC 3 cut(s) 30, 193, 343
MboII GAAGA 2 cut(s) 100, 298
MflI RGATCY 3 cut(s) 30, 193, 343
MhlI GDGCHC 2 cut(s) 466, 482
MluCI AATT 1 cut(s) 106
MnlI CCTC 8 cut(s) 21, 44, 49, 177, 184, 311, 328, 342
Mph1103I ATGCAT 1 cut(s) 69
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 309
MspI CCGG 2 cut(s) 201, 516
MspR9I CCNGG 3 cut(s) 202, 308, 517
MvaI CCWGG 1 cut(s) 308
MvnI CGCG 2 cut(s) 101, 148
MwoI GCNNNNNNNGC 2 cut(s) 60, 257
NciI CCSGG 2 cut(s) 202, 517
NdeII GATC 3 cut(s) 30, 193, 343
NlaIII CATG 2 cut(s) 67, 71
NlaIV GGNNCC 4 cut(s) 32, 83, 195, 299
NsiI ATGCAT 1 cut(s) 69
NspI RCATGY 2 cut(s) 67, 71
PaeI GCATGC 2 cut(s) 67, 71
PcsI WCGNNNNNNNCGW 3 cut(s) 42, 51, 396
PkrI GCNGC 4 cut(s) 232, 250, 378, 422
PpuMI RGGWCCY 1 cut(s) 298
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 4 cut(s) 32, 83, 195, 299
PspPI GGNCC 1 cut(s) 298
PspPPI RGGWCCY 1 cut(s) 298
PsuI RGATCY 3 cut(s) 30, 193, 343
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 309
SalI GTCGAC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 4 cut(s) 231, 249, 377, 421
Sau3AI GATC 3 cut(s) 30, 193, 343
Sau96I GGNCC 1 cut(s) 298
ScrFI CCNGG 3 cut(s) 202, 308, 517
SduI GDGCHC 2 cut(s) 466, 482
SetI ASST 7 cut(s) 12, 181, 293, 303, 321, 381, 393
SfaNI GCATC 1 cut(s) 432
SgrDI CGTCGACG 1 cut(s) 44
SinI GGWCC 1 cut(s) 298
SmiMI CAYNNNNRTG 1 cut(s) 309
SphI GCATGC 2 cut(s) 67, 71
Sse9I AATT 1 cut(s) 106
SsiI CCGC 5 cut(s) 146, 162, 230, 260, 420
StyD4I CCNGG 3 cut(s) 200, 306, 515
StyI CCWWGG 1 cut(s) 439
TaaI ACNGT 2 cut(s) 413, 461
TaiI ACGT 3 cut(s) 12, 293, 393
TaqI TCGA 1 cut(s) 45
TasI AATT 1 cut(s) 106
TauI GCSGC 2 cut(s) 233, 423
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 2 cut(s) 159, 464
TseI GCWGC 2 cut(s) 248, 376
TspGWI ACGGA 1 cut(s) 354
TspRI CASTG 2 cut(s) 159, 464
VneI GTGCAC 1 cut(s) 462
VpaK11BI GGWCC 1 cut(s) 298
XagI CCTNNNNNAGG 1 cut(s) 305
XapI RAATTY 1 cut(s) 106
XceI RCATGY 2 cut(s) 67, 71
XmiI GTMKAC 1 cut(s) 45
Zsp2I ATGCAT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.