pycom13g01250

D-galacturonate reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0003272
Physical Location & Seq
Reverse (-)
813480 .. 815377
1898 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 957 bp
ATGACGCCAACGATAGTTCCTGAGGTAACACTGATCTCCTGTGACATGACGATGCCAGTGATTGGCATGGGGACTTCACCGTACCCTAAAGTCGAGCCTGAAACAGCCATAGCTGCAATTCTTGAAGCAATCAGAGCGGGCTACCGCCACTTCGATACTGCCTTTGTTTACGGGTCAGAGCTAGATCTGGGGGGAGCCATAGCTGAAGCACTGCGTCTTGGACTTGTCAAGTCCAGGAGTGAGCTCTTCATCACCACCAAGCTTTATGCCAGCTTTGCTGAAAGGGACCTTGTAGTGCCTGCCATCAACATGAGTTTAAGGAATCTGCAATTGGAGTATGTGGATATGTACATAATACATTGGCCCTTCAAACTGGGGAAAGTGGTGAGCTCTATGCCAGTAGAAAAGGGAATGCTGCTACCCTTAGATATCAAGTCAGTTTGGGAAGGCATGGAAGAATGCAAGAGACTGGGCCTTGCGAGGGGCATTGGCGTCAGTAACTTCACTTCCGAGATGCTTGAGGACCTCCTTTCCATCGCCAAATTCCCTCCCGCCCTCAACCAATTGGAGATGAACCCACTTTGGCAGCTGAAGGAACTGAGGGAGTTCTGTAAGGCAAAGGGCATTCATGTGACGGCCTACTCTCCGTTAGGGTCAACCGCGTCTAGATTTGGAGACAACAAAGTCTTAGGCTCAAAAGTCCTCCAGGACATTGCCAAAGCCAAAGGAAAAACAACTGCTCAGATAGCGTTGAGATGGGTGTACCAGCAGGGGGTGAGCTTGGTAACAAAGAGTACCAACAAGGAAAGAATGAATCAGAACCTTGACATTTTCAGTTGGTCCTTGACTGAGGAGGAATTAGACAAGATTAGTCGTCTTCCTCAACACAAAACAATCACCTTCGCCTCAATTATGGGACCGCATGATGTTGTGCTCCGGATTGATGCTGGATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 map00053
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

319

Amino Acids

35.32

Weight (kDa)

6.97

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 21 - 292 2.1e-52 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 683
AccB7I CCANNNNNTGG 1 cut(s) 62
AccBSI CCGCTC 1 cut(s) 137
AccII CGCG 1 cut(s) 662
AccIII TCCGGA 1 cut(s) 936
AciI CCGC 5 cut(s) 137, 145, 552, 660, 920
AcsI RAATTY 1 cut(s) 542
AcuI CTGAAG 2 cut(s) 225, 611
AcyI GRCGYC 2 cut(s) 5, 492
AfaI GTAC 4 cut(s) 83, 350, 764, 796
AfiI CCNNNNNNNGG 3 cut(s) 62, 481, 772
AgsI TTSAA 2 cut(s) 125, 370
AjnI CCWGG 2 cut(s) 233, 705
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 9 cut(s) 113, 181, 203, 244, 262, 273, 390, 589, 780
AluI AGCT 9 cut(s) 113, 181, 203, 244, 262, 273, 390, 589, 780
Alw21I GWGCWC 3 cut(s) 246, 392, 936
Alw26I GTCTC 2 cut(s) 460, 669
Aor13HI TCCGGA 1 cut(s) 936
AoxI GGCC 3 cut(s) 362, 472, 636
ApeKI GCWGC 3 cut(s) 113, 415, 586
ApoI RAATTY 1 cut(s) 542
AspS9I GGNCC 6 cut(s) 286, 363, 472, 523, 840, 917
AsuHPI GGTGA 5 cut(s) 69, 244, 397, 787, 889
AvaII GGWCC 4 cut(s) 286, 523, 840, 917
AxyI CCTNAGG 1 cut(s) 21
BanII GRGCYC 2 cut(s) 246, 392
BarI GAAGNNNNNNTAC 2 cut(s) 490, 522
BbsI GAAGAC 1 cut(s) 869
Bbv12I GWGCWC 3 cut(s) 246, 392, 936
BbvI GCAGC 3 cut(s) 100, 402, 598
BccI CCATC 3 cut(s) 311, 542, 750
BceAI ACGGC 1 cut(s) 651
BciT130I CCWGG 2 cut(s) 235, 707
BcoDI GTCTC 2 cut(s) 460, 669
BfaI CTAG 2 cut(s) 182, 666
BglII AGATCT 1 cut(s) 184
BisI GCNGC 3 cut(s) 114, 416, 587
BlsI GCNGC 3 cut(s) 115, 417, 588
Bme1390I CCNGG 2 cut(s) 235, 707
Bme18I GGWCC 4 cut(s) 286, 523, 840, 917
BmgT120I GGNCC 6 cut(s) 286, 363, 472, 523, 840, 917
BmiI GGNNCC 3 cut(s) 196, 287, 918
BmrFI CCNGG 2 cut(s) 235, 707
BmrI ACTGGG 2 cut(s) 383, 479
BmsI GCATC 3 cut(s) 42, 504, 934
BmuI ACTGGG 2 cut(s) 383, 479
BpiI GAAGAC 1 cut(s) 869
BpmI CTGGAG 1 cut(s) 689
BpuEI CTTGAG 1 cut(s) 539
BsaHI GRCGYC 2 cut(s) 5, 492
BsaWI WCCGGW 1 cut(s) 936
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 481, 772
Bse1I ACTGG 4 cut(s) 56, 378, 398, 474
Bse21I CCTNAGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 711
BseAI TCCGGA 1 cut(s) 936
BseBI CCWGG 2 cut(s) 235, 707
BseLI CCNNNNNNNGG 3 cut(s) 62, 481, 772
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 4 cut(s) 12, 590, 755, 840
BseNI ACTGG 4 cut(s) 56, 378, 398, 474
BseRI GAGGAG 1 cut(s) 866
BseXI GCAGC 3 cut(s) 100, 402, 598
Bsh1236I CGCG 1 cut(s) 662
BshFI GGCC 3 cut(s) 364, 474, 638
BsiHKAI GWGCWC 3 cut(s) 246, 392, 936
BsiSI CCGG 1 cut(s) 937
BslFI GGGAC 3 cut(s) 85, 299, 930
BslI CCNNNNNNNGG 3 cut(s) 62, 481, 772
BsmAI GTCTC 2 cut(s) 460, 669
BsmFI GGGAC 3 cut(s) 85, 299, 930
BsmI GAATGC 3 cut(s) 417, 464, 624
BsnI GGCC 3 cut(s) 364, 474, 638
Bsp1286I GDGCHC 3 cut(s) 246, 392, 936
Bsp13I TCCGGA 1 cut(s) 936
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 2 cut(s) 33, 184
BspACI CCGC 5 cut(s) 137, 145, 552, 660, 920
BspANI GGCC 3 cut(s) 364, 474, 638
BspCNI CTCAG 4 cut(s) 13, 591, 754, 841
BspEI TCCGGA 1 cut(s) 936
BspFNI CGCG 1 cut(s) 662
BspLI GGNNCC 3 cut(s) 196, 287, 918
BspQI GCTCTTC 1 cut(s) 251
BsrBI CCGCTC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 711
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 4 cut(s) 56, 378, 398, 474
BssMI GATC 2 cut(s) 33, 184
BssNI GRCGYC 2 cut(s) 5, 492
Bst2UI CCWGG 2 cut(s) 235, 707
Bst4CI ACNGT 1 cut(s) 81
Bst6I CTCTTC 1 cut(s) 251
BstACI GRCGYC 2 cut(s) 5, 492
BstAUI TGTACA 1 cut(s) 348
BstC8I GCNNGC 3 cut(s) 139, 271, 300
BstDEI CTNAG 6 cut(s) 21, 424, 599, 688, 741, 849
BstFNI CGCG 1 cut(s) 662
BstKTI GATC 2 cut(s) 36, 187
BstMAI GTCTC 2 cut(s) 460, 669
BstMBI GATC 2 cut(s) 33, 184
BstMWI GCNNNNNNNGC 4 cut(s) 113, 134, 275, 746
BstNI CCWGG 2 cut(s) 235, 707
BstSCI CCNGG 2 cut(s) 233, 705
BstUI CGCG 1 cut(s) 662
BstV1I GCAGC 3 cut(s) 100, 402, 598
BstV2I GAAGAC 1 cut(s) 869
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
Bsu36I CCTNAGG 1 cut(s) 21
BsuRI GGCC 3 cut(s) 364, 474, 638
BtgZI GCGATG 1 cut(s) 520
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 3 cut(s) 29, 63, 209
Cac8I GCNNGC 3 cut(s) 139, 271, 300
Cfr13I GGNCC 6 cut(s) 286, 363, 472, 523, 840, 917
CseI GACGC 4 cut(s) 13, 203, 481, 651
Csp6I GTAC 4 cut(s) 82, 349, 763, 795
CviAII CATG 6 cut(s) 46, 67, 310, 451, 629, 923
CviQI GTAC 4 cut(s) 82, 349, 763, 795
DdeI CTNAG 6 cut(s) 21, 424, 599, 688, 741, 849
DpnI GATC 2 cut(s) 35, 186
DpnII GATC 2 cut(s) 33, 184
DrdI GACNNNNNNGTC 1 cut(s) 683
DseDI GACNNNNNNGTC 1 cut(s) 683
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Ecl136II GAGCTC 2 cut(s) 244, 390
Eco24I GRGCYC 2 cut(s) 246, 392
Eco32I GATATC 1 cut(s) 430
Eco47I GGWCC 4 cut(s) 286, 523, 840, 917
Eco53kI GAGCTC 2 cut(s) 244, 390
Eco57I CTGAAG 2 cut(s) 225, 611
Eco81I CCTNAGG 1 cut(s) 21
EcoICRI GAGCTC 2 cut(s) 244, 390
EcoO109I RGGNCCY 2 cut(s) 286, 523
EcoRII CCWGG 2 cut(s) 233, 705
EcoRV GATATC 1 cut(s) 430
EcoT38I GRGCYC 2 cut(s) 246, 392
FaeI CATG 6 cut(s) 49, 70, 313, 454, 632, 926
FaqI GGGAC 3 cut(s) 85, 299, 930
FatI CATG 6 cut(s) 45, 66, 309, 450, 628, 922
FauI CCCGC 2 cut(s) 130, 559
Fnu4HI GCNGC 3 cut(s) 114, 416, 587
FriOI GRGCYC 2 cut(s) 246, 392
Fsp4HI GCNGC 3 cut(s) 114, 416, 587
FspBI CTAG 2 cut(s) 182, 666
GluI GCNGC 3 cut(s) 114, 416, 587
GsuI CTGGAG 1 cut(s) 689
HaeIII GGCC 3 cut(s) 364, 474, 638
HapII CCGG 1 cut(s) 937
HgaI GACGC 4 cut(s) 13, 203, 481, 651
Hin1I GRCGYC 2 cut(s) 5, 492
Hin1II CATG 6 cut(s) 49, 70, 313, 454, 632, 926
HincII GTYRAC 1 cut(s) 657
HindII GTYRAC 1 cut(s) 657
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 2 cut(s) 322, 814
HpaII CCGG 1 cut(s) 937
HphI GGTGA 5 cut(s) 69, 244, 397, 787, 889
Hpy166II GTNNAC 3 cut(s) 169, 657, 763
Hpy188I TCNGA 5 cut(s) 134, 178, 511, 744, 819
Hpy188III TCNNGA 4 cut(s) 20, 122, 666, 937
Hpy8I GTNNAC 3 cut(s) 169, 657, 763
HpyAV CCTTC 4 cut(s) 376, 440, 586, 910
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4V TGCA 3 cut(s) 116, 328, 462
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 134, 275, 746
HpyF3I CTNAG 6 cut(s) 21, 424, 599, 688, 741, 849
Hsp92I GRCGYC 2 cut(s) 5, 492
Hsp92II CATG 6 cut(s) 49, 70, 313, 454, 632, 926
Kpn2I TCCGGA 1 cut(s) 936
Kzo9I GATC 2 cut(s) 33, 184
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 2 cut(s) 194, 939
Lsp1109I GCAGC 3 cut(s) 100, 402, 598
LweI GCATC 3 cut(s) 42, 504, 934
MaeI CTAG 2 cut(s) 182, 666
MaeIII GTNAC 5 cut(s) 25, 41, 497, 631, 784
MalI GATC 2 cut(s) 35, 186
MbiI CCGCTC 1 cut(s) 137
MboI GATC 2 cut(s) 33, 184
MboII GAAGA 3 cut(s) 238, 467, 869
MfeI CAATTG 2 cut(s) 329, 563
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 3 cut(s) 246, 392, 936
MluCI AATT 6 cut(s) 117, 329, 542, 563, 857, 909
MroI TCCGGA 1 cut(s) 936
MseI TTAA 1 cut(s) 317
MslI CAYNNNNRTG 3 cut(s) 50, 308, 629
MspA1I CMGCKG 1 cut(s) 589
MspI CCGG 1 cut(s) 937
MspR9I CCNGG 2 cut(s) 235, 707
MunI CAATTG 2 cut(s) 329, 563
Mva1269I GAATGC 3 cut(s) 417, 464, 624
MvaI CCWGG 2 cut(s) 235, 707
MvnI CGCG 1 cut(s) 662
MwoI GCNNNNNNNGC 4 cut(s) 113, 134, 275, 746
NdeII GATC 2 cut(s) 33, 184
NlaIII CATG 6 cut(s) 49, 70, 313, 454, 632, 926
NlaIV GGNNCC 3 cut(s) 196, 287, 918
NmuCI GTSAC 2 cut(s) 41, 631
PciSI GCTCTTC 1 cut(s) 251
PctI GAATGC 3 cut(s) 417, 464, 624
PfeI GAWTC 2 cut(s) 322, 814
PflMI CCANNNNNTGG 1 cut(s) 62
PfoI TCCNGGA 2 cut(s) 233, 705
PkrI GCNGC 3 cut(s) 115, 417, 588
PpuMI RGGWCCY 2 cut(s) 286, 523
Psp124BI GAGCTC 2 cut(s) 246, 392
Psp5II RGGWCCY 2 cut(s) 286, 523
Psp6I CCWGG 2 cut(s) 233, 705
PspGI CCWGG 2 cut(s) 233, 705
PspN4I GGNNCC 3 cut(s) 196, 287, 918
PspPI GGNCC 6 cut(s) 286, 363, 472, 523, 840, 917
PspPPI RGGWCCY 2 cut(s) 286, 523
PsuI RGATCY 1 cut(s) 184
PvuII CAGCTG 1 cut(s) 589
RsaI GTAC 4 cut(s) 83, 350, 764, 796
RsaNI GTAC 4 cut(s) 82, 349, 763, 795
RseI CAYNNNNRTG 3 cut(s) 50, 308, 629
SacI GAGCTC 2 cut(s) 246, 392
SapI GCTCTTC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 3 cut(s) 114, 416, 587
Sau3AI GATC 2 cut(s) 33, 184
Sau96I GGNCC 6 cut(s) 286, 363, 472, 523, 840, 917
ScrFI CCNGG 2 cut(s) 235, 707
SduI GDGCHC 3 cut(s) 246, 392, 936
SfaNI GCATC 3 cut(s) 42, 504, 934
SinI GGWCC 4 cut(s) 286, 523, 840, 917
SmiMI CAYNNNNRTG 3 cut(s) 50, 308, 629
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 6 cut(s) 117, 329, 542, 563, 857, 909
SsiI CCGC 5 cut(s) 137, 145, 552, 660, 920
SspMI CTAG 2 cut(s) 182, 666
SstI GAGCTC 2 cut(s) 246, 392
StyD4I CCNGG 2 cut(s) 233, 705
TaaI ACNGT 1 cut(s) 81
TaqI TCGA 2 cut(s) 93, 153
TasI AATT 6 cut(s) 117, 329, 542, 563, 857, 909
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 2 cut(s) 322, 814
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 3 cut(s) 36, 63, 216
TseFI GTSAC 2 cut(s) 41, 631
TseI GCWGC 3 cut(s) 113, 415, 586
Tsp45I GTSAC 2 cut(s) 41, 631
TspDTI ATGAA 4 cut(s) 238, 587, 617, 827
TspGWI ACGGA 1 cut(s) 636
TspRI CASTG 3 cut(s) 36, 63, 216
Van91I CCANNNNNTGG 1 cut(s) 62
VpaK11BI GGWCC 4 cut(s) 286, 523, 840, 917
XapI RAATTY 1 cut(s) 542
XbaI TCTAGA 1 cut(s) 665
XspI CTAG 2 cut(s) 182, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.