Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002817

Physical Location & Seq

Genomic Coordinates Reverse (-)

3926435 .. 3927442

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCAACCCCATCTCCGCCTCCAACCGTTTGCACAGTCCTCAACGAATCCAAGCGCATAGTCAACGCCCACTCCTGCCACTTCCTAGCCCTCTCAGTCCTCTTCCTCCTCCCCCTCGCCTTCTCCTCCACCGTTTACCCCACAATCCAGAACCTCCTCGCCGATCGAGTCCCAGACAACTCCAAGATATTCCTCGAAATCTCAACTTTCGACCCCCATCAGCACCAACCCATCATCCCCGCCAAAACCCTTCTCATCGCCCTTGCTTTCTCCCTCTTCGCCGTCGTCTTCTCTCTCTGCGCCCTCGGGTCGATCACTTACAGTGTGTTTCACGGATTCTATGGCCGGCCGGTCAAGCTCGTCTCCGCCGTCAAATCCGTCGTCTCCTCCTTCTTCCCTCTATTGGGCACTGCTTTCATTTCCCAGGTCCTCGTTTTATTGGTTTTTGTTCTTTTCGGGCTGTACGTGTTCTTGGTGGTTCGAGGAGCTGAGCTCATGGGGTTTGAATTGGAGTACTCTTCGCCTCATTTCATTGGGTTTTTAGCGGTTGTTGTGACTGTTCTGTTTCTGGTTTTGCTGCATCTTCAAGTGAATTGGACACTGGCTGGTGTTGTTGTTGTGGTGGAATCAAAATGGGGATTCGGGTCCTTGACCCGAAGTGCGAATTTGATCAAGGGAATGAGATGGGTGGCATTGTGGTTGCTGATATTTTTCGGGTTTTTCGTGGGGGTTTTGGGGTTCTGCAGTTGGGTTTCGGCATTGGATTTGAAGGGAGATACTGATGGGTGGAAGAGCTGGGCGTTTCTGGTGCAAATTGTGGTGACTGCGACTTCTCTCGTGCTGCTGATGCTCTACAATGCCGCCGCAAATACGGTGTTGTATATGTATTGCAAGGCCGTGAATGGTGAGCTTGCCATGGAAATTGCTGAGGAGTTTGCTAGGGAGTATGTGAGCTTGCCCTTCGACAACGGAAAAGTCCCTCATCTTGTTTCGGTTGCATATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

336

Amino Acids

36.83

Weight (kDa)

7.08

Isoelectric Point (pI)

29.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03330 AT3G11810
fragaria_vesca	FvH4_4g30670
malus_domestica	MD12G1099700.v1.1 MD16G1066700.v1.1
prunus_persica	Prupe.1G280200_v2.0.a1
pyrus_communis	pycom07g14060 pycom11g23620 pycom12g09400 pycom13g05970
rosa_chinensis	RchiOBHm_Chr4g0439081 RchiOBHm_Chr4g0439091 RchiOBHm_Chr5g0060931
rosa_laevigata	RLG00000006301 RLG00000006302 RLG00000035415
rosa_multiflora	Rmu_co8048828.1_g000001 Rmu_co8116372.1_g000001 Rmu_sc0000152.1_g000002 Rmu_sc0012017.1_g000006 Rmu_sc0012017.1_g000007 Rmu_sc0015139.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380070 Rroxscaffold_5G00380080
rosa_rugosa	Rorug04G0315400 Rorug04G0315500
rosa_samantha	Rh3CG347900 Rh4AG366200 Rh4AG366300 Rh4BG377600 Rh4BG377700 Rh4CG391700 Rh4CG391800 Rh4DG372300 Rh4DG372400
rosa_wichuraiana	Rw0G007450 Rw0G007460 Rw0G017000 Rw0G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	17, 240, 366, 545, 861, 864
AcoI	YGGCCR	2 cut(s)	343, 347
AcsI	RAATTY	1 cut(s)	664
AfaI	GTAC	2 cut(s)	464, 515
AfiI	CCNNNNNNNGG	2 cut(s)	403, 404
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	3 cut(s)	506, 587, 769
AjnI	CCWGG	1 cut(s)	423
AluBI	AGCT	6 cut(s)	358, 488, 493, 795, 910, 954
AluI	AGCT	6 cut(s)	358, 488, 493, 795, 910, 954
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	2 cut(s)	367, 388
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	3 cut(s)	343, 347, 894
ApeKI	GCWGC	2 cut(s)	577, 841
ApoI	RAATTY	1 cut(s)	664
ArsI	GACNNNNNNTTYG	2 cut(s)	366, 398
AspLEI	GCGC	2 cut(s)	57, 302
AspS9I	GGNCC	2 cut(s)	427, 645
AsuHPI	GGTGA	2 cut(s)	832, 917
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	2 cut(s)	427, 645
BaeGI	GKGCMC	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	495
BauI	CACGAG	1 cut(s)	836
BbsI	GAAGAC	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	495
BbvCI	CCTCAGC	1 cut(s)	927
BbvI	GCAGC	2 cut(s)	564, 828
BccI	CCATC	5 cut(s)	19, 225, 239, 678, 776
BceAI	ACGGC	3 cut(s)	266, 353, 881
BciT130I	CCWGG	1 cut(s)	425
BclI	TGATCA	1 cut(s)	669
BcoDI	GTCTC	2 cut(s)	367, 388
BfaI	CTAG	2 cut(s)	86, 939
BfmI	CTRYAG	1 cut(s)	742
BisI	GCNGC	4 cut(s)	578, 842, 861, 864
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	4 cut(s)	579, 843, 862, 865
BmcAI	AGTACT	1 cut(s)	515
Bme1390I	CCNGG	1 cut(s)	425
Bme18I	GGWCC	2 cut(s)	427, 645
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	427, 645
BmiI	GGNNCC	1 cut(s)	646
BmrFI	CCNGG	1 cut(s)	425
BmsI	GCATC	2 cut(s)	589, 837
BpiI	GAAGAC	1 cut(s)	280
BplI	GAGNNNNNCTC	2 cut(s)	477, 509
Bpu10I	CCTNAGC	1 cut(s)	927
Bpu1102I	GCTNAGC	1 cut(s)	489
BsaAI	YACGTR	1 cut(s)	466
BsaJI	CCNNGG	3 cut(s)	304, 423, 915
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 56, 86
Bsc4I	CCNNNNNNNGG	2 cut(s)	403, 404
Bse118I	RCCGGY	2 cut(s)	345, 349
Bse1I	ACTGG	1 cut(s)	606
BseBI	CCWGG	1 cut(s)	425
BseDI	CCNNGG	3 cut(s)	304, 423, 915
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	2 cut(s)	403, 404
BseMII	CTCAG	3 cut(s)	108, 480, 918
BseNI	ACTGG	1 cut(s)	606
BseRI	GAGGAG	6 cut(s)	98, 115, 146, 376, 498, 944
BseSI	GKGCMC	1 cut(s)	410
BseX3I	CGGCCG	1 cut(s)	347
BseXI	GCAGC	2 cut(s)	564, 828
BseYI	CCCAGC	1 cut(s)	795
Bsh1285I	CGRYCG	2 cut(s)	166, 350
BshFI	GGCC	3 cut(s)	345, 349, 896
BsiEI	CGRYCG	2 cut(s)	166, 350
BsiHKAI	GWGCWC	1 cut(s)	495
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	2 cut(s)	346, 350
BslFI	GGGAC	2 cut(s)	155, 962
BslI	CCNNNNNNNGG	2 cut(s)	403, 404
BsmAI	GTCTC	2 cut(s)	367, 388
BsmBI	CGTCTC	2 cut(s)	367, 388
BsmFI	GGGAC	2 cut(s)	155, 962
BsnI	GGCC	3 cut(s)	345, 349, 896
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	2 cut(s)	410, 495
Bsp143I	GATC	3 cut(s)	163, 312, 669
Bsp1720I	GCTNAGC	1 cut(s)	489
Bsp19I	CCATGG	1 cut(s)	915
BspACI	CCGC	6 cut(s)	17, 240, 366, 545, 861, 864
BspANI	GGCC	3 cut(s)	345, 349, 896
BspCNI	CTCAG	3 cut(s)	107, 481, 919
BspLI	GGNNCC	1 cut(s)	646
BspMAI	CTGCAG	1 cut(s)	746
BspQI	GCTCTTC	1 cut(s)	785
BsrFI	RCCGGY	2 cut(s)	345, 349
BsrI	ACTGG	1 cut(s)	606
BssAI	RCCGGY	2 cut(s)	345, 349
BssECI	CCNNGG	3 cut(s)	304, 423, 915
BssMI	GATC	3 cut(s)	163, 312, 669
BssSI	CACGAG	1 cut(s)	836
BssT1I	CCWWGG	1 cut(s)	915
Bst2BI	CACGAG	1 cut(s)	836
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	6 cut(s)	28, 37, 133, 323, 559, 874
Bst6I	CTCTTC	4 cut(s)	107, 281, 523, 785
BstBAI	YACGTR	1 cut(s)	466
BstC8I	GCNNGC	3 cut(s)	347, 912, 956
BstDEI	CTNAG	3 cut(s)	94, 489, 927
BstDSI	CCRYGG	1 cut(s)	915
BstF5I	GGATG	1 cut(s)	234
BstHHI	GCGC	2 cut(s)	57, 302
BstKTI	GATC	3 cut(s)	166, 315, 672
BstMAI	GTCTC	2 cut(s)	367, 388
BstMBI	GATC	3 cut(s)	163, 312, 669
BstMCI	CGRYCG	2 cut(s)	166, 350
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 847
BstNI	CCWGG	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	423
BstSFI	CTRYAG	1 cut(s)	742
BstSLI	GKGCMC	1 cut(s)	410
BstV1I	GCAGC	2 cut(s)	564, 828
BstV2I	GAAGAC	1 cut(s)	280
BstZI	CGGCCG	1 cut(s)	347
BsuRI	GGCC	3 cut(s)	345, 349, 896
BtgI	CCRYGG	1 cut(s)	915
BtgZI	GCGATG	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	234
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	3 cut(s)	328, 408, 599
Cac8I	GCNNGC	3 cut(s)	347, 912, 956
CfoI	GCGC	2 cut(s)	57, 302
Cfr10I	RCCGGY	2 cut(s)	345, 349
Cfr13I	GGNCC	2 cut(s)	427, 645
Csp6I	GTAC	2 cut(s)	463, 514
CviAII	CATG	2 cut(s)	496, 916
CviQI	GTAC	2 cut(s)	463, 514
DdeI	CTNAG	3 cut(s)	94, 489, 927
DpnI	GATC	3 cut(s)	165, 314, 671
DpnII	GATC	3 cut(s)	163, 312, 669
EaeI	YGGCCR	2 cut(s)	343, 347
EagI	CGGCCG	1 cut(s)	347
Eam1104I	CTCTTC	4 cut(s)	107, 281, 523, 785
EarI	CTCTTC	4 cut(s)	107, 281, 523, 785
EciI	GGCGGA	2 cut(s)	6, 355
Ecl136II	GAGCTC	1 cut(s)	493
EclXI	CGGCCG	1 cut(s)	347
Eco130I	CCWWGG	1 cut(s)	915
Eco24I	GRGCYC	1 cut(s)	495
Eco47I	GGWCC	2 cut(s)	427, 645
Eco52I	CGGCCG	1 cut(s)	347
Eco53kI	GAGCTC	1 cut(s)	493
Eco88I	CYCGRG	1 cut(s)	305
EcoICRI	GAGCTC	1 cut(s)	493
EcoO109I	RGGNCCY	2 cut(s)	427, 645
EcoRII	CCWGG	1 cut(s)	423
EcoT14I	CCWWGG	1 cut(s)	915
EcoT38I	GRGCYC	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	915
Esp3I	CGTCTC	2 cut(s)	367, 388
FaeI	CATG	2 cut(s)	499, 919
FaiI	YATR	9 cut(s)	59, 342, 497, 882, 884, 917, 948, 1000, 1002
FaqI	GGGAC	2 cut(s)	155, 962
FatI	CATG	2 cut(s)	495, 915
FauI	CCCGC	1 cut(s)	247
FauNDI	CATATG	1 cut(s)	1000
FbaI	TGATCA	1 cut(s)	669
Fnu4HI	GCNGC	4 cut(s)	578, 842, 861, 864
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	495
FseI	GGCCGGCC	1 cut(s)	349
Fsp4HI	GCNGC	4 cut(s)	578, 842, 861, 864
FspBI	CTAG	2 cut(s)	86, 939
GlaI	GCGC	2 cut(s)	56, 301
GluI	GCNGC	4 cut(s)	578, 842, 861, 864
GsaI	CCCAGC	1 cut(s)	799
HaeIII	GGCC	3 cut(s)	345, 349, 896
HapII	CCGG	2 cut(s)	346, 350
HhaI	GCGC	2 cut(s)	57, 302
Hin1II	CATG	2 cut(s)	499, 919
Hin6I	GCGC	2 cut(s)	55, 300
HinP1I	GCGC	2 cut(s)	55, 300
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	5 cut(s)	47, 168, 336, 626, 639
HpaII	CCGG	2 cut(s)	346, 350
HphI	GGTGA	2 cut(s)	832, 917
Hpy166II	GTNNAC	2 cut(s)	64, 136
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	2 cut(s)	64, 136
Hpy99I	CGWCG	2 cut(s)	287, 383
HpyAV	CCTTC	5 cut(s)	130, 260, 400, 763, 970
HpyCH4III	ACNGT	6 cut(s)	28, 37, 133, 323, 559, 874
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	6 cut(s)	33, 580, 744, 811, 891, 998
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 847
HpyF3I	CTNAG	3 cut(s)	94, 489, 927
HpySE526I	ACGT	1 cut(s)	465
Hsp92II	CATG	2 cut(s)	499, 919
HspAI	GCGC	2 cut(s)	55, 300
KroI	GCCGGC	1 cut(s)	345
KroNI	GCCGGC	1 cut(s)	347
Ksp22I	TGATCA	1 cut(s)	669
Kzo9I	GATC	3 cut(s)	163, 312, 669
LguI	GCTCTTC	1 cut(s)	785
LmnI	GCTCC	1 cut(s)	485
Lsp1109I	GCAGC	2 cut(s)	564, 828
LweI	GCATC	2 cut(s)	589, 837
MaeI	CTAG	2 cut(s)	86, 939
MaeII	ACGT	1 cut(s)	465
MaeIII	GTNAC	2 cut(s)	553, 820
MalI	GATC	3 cut(s)	165, 314, 671
MboI	GATC	3 cut(s)	163, 312, 669
MboII	GAAGA	7 cut(s)	94, 268, 280, 385, 510, 575, 802
MhlI	GDGCHC	2 cut(s)	410, 495
MluCI	AATT	5 cut(s)	506, 592, 664, 813, 921
MlyI	GAGTC	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	47
MroNI	GCCGGC	1 cut(s)	345
MspI	CCGG	2 cut(s)	346, 350
MspR9I	CCNGG	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	425
MwoI	GCNNNNNNNGC	2 cut(s)	355, 847
NaeI	GCCGGC	1 cut(s)	347
NcoI	CCATGG	1 cut(s)	915
NdeI	CATATG	1 cut(s)	1000
NdeII	GATC	3 cut(s)	163, 312, 669
NgoMIV	GCCGGC	1 cut(s)	345
NlaIII	CATG	2 cut(s)	499, 919
NlaIV	GGNNCC	1 cut(s)	646
NmuCI	GTSAC	2 cut(s)	553, 820
PciSI	GCTCTTC	1 cut(s)	785
PcsI	WCGNNNNNNNCGW	3 cut(s)	366, 462, 720
PdiI	GCCGGC	1 cut(s)	347
PfeI	GAWTC	4 cut(s)	47, 336, 626, 639
PkrI	GCNGC	4 cut(s)	579, 843, 862, 865
Ple19I	CGATCG	1 cut(s)	166
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Ppu21I	YACGTR	1 cut(s)	466
PpuMI	RGGWCCY	2 cut(s)	427, 645
Psp124BI	GAGCTC	1 cut(s)	495
Psp5II	RGGWCCY	2 cut(s)	427, 645
Psp6I	CCWGG	1 cut(s)	423
PspFI	CCCAGC	1 cut(s)	795
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	1 cut(s)	646
PspPI	GGNCC	2 cut(s)	427, 645
PspPPI	RGGWCCY	2 cut(s)	427, 645
PstI	CTGCAG	1 cut(s)	746
PvuI	CGATCG	1 cut(s)	166
RigI	GGCCGGCC	1 cut(s)	349
RsaI	GTAC	2 cut(s)	464, 515
RsaNI	GTAC	2 cut(s)	463, 514
SacI	GAGCTC	1 cut(s)	495
SapI	GCTCTTC	1 cut(s)	785
SatI	GCNGC	4 cut(s)	578, 842, 861, 864
Sau3AI	GATC	3 cut(s)	163, 312, 669
Sau96I	GGNCC	2 cut(s)	427, 645
ScaI	AGTACT	1 cut(s)	515
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	425
SduI	GDGCHC	2 cut(s)	410, 495
SetI	ASST	9 cut(s)	156, 360, 429, 468, 490, 495, 797, 912, 956
SfaNI	GCATC	2 cut(s)	589, 837
SfcI	CTRYAG	1 cut(s)	742
SinI	GGWCC	2 cut(s)	427, 645
Sse9I	AATT	5 cut(s)	506, 592, 664, 813, 921
SsiI	CCGC	6 cut(s)	17, 240, 366, 545, 861, 864
SspMI	CTAG	2 cut(s)	86, 939
SstI	GAGCTC	1 cut(s)	495
StyD4I	CCNGG	1 cut(s)	423
StyI	CCWWGG	1 cut(s)	915
TaaI	ACNGT	6 cut(s)	28, 37, 133, 323, 559, 874
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	6 cut(s)	166, 195, 210, 311, 481, 963
TasI	AATT	5 cut(s)	506, 592, 664, 813, 921
TatI	WGTACW	1 cut(s)	513
TauI	GCSGC	2 cut(s)	863, 866
TfiI	GAWTC	4 cut(s)	47, 336, 626, 639
TscAI	CASTG	3 cut(s)	328, 415, 606
TseFI	GTSAC	2 cut(s)	553, 820
TseI	GCWGC	2 cut(s)	577, 841
Tsp45I	GTSAC	2 cut(s)	553, 820
TspDTI	ATGAA	2 cut(s)	406, 520
TspGWI	ACGGA	3 cut(s)	348, 367, 984
TspRI	CASTG	3 cut(s)	328, 415, 606
VpaK11BI	GGWCC	2 cut(s)	427, 645
XapI	RAATTY	1 cut(s)	664
XspI	CTAG	2 cut(s)	86, 939
ZrmI	AGTACT	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.