Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005895

Physical Location & Seq

Genomic Coordinates Reverse (-)

11968283 .. 11968629

Gene Structure 347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCGACGGTTCCAGGGCAACTGATATGGGAGATAGTGAAGAAGAACAACTCTTTTCTGGAGCCCAACAACCTCCTCAATCTCCACTCCTACAAGCACTCTGGGTTGGCAAACAAGAAAACCGTGACCATTCAGGGTGTGGGCAAAGATCAATCACAAGATGTACTGCTGGCGACAAGTAAGACCAAGAAGCAGAACAAGCCCGCTGCTCTGTTGCATAAGTCTGTGATGAAGCAGGAGTTTCGCCGGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

85

Amino Acids

9.45

Weight (kDa)

10.2

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	8 - 83	8.4e-15	Ribosomal L28e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005895)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06820
pyrus_communis	pycom13g16250
rosa_laevigata	RLG00000014744
rosa_multiflora	Rmu_sc0004368.1_g000007 Rmu_sc0020840.1_g000001 Rmu_sc0023010.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074470 Rroxscaffold_1G00074480 Rroxscaffold_3G00245500 Rroxscaffold_4G00314580
rosa_rugosa	Rorug02G0027900 Rorug02G0445200 Rorug04G0184800 Rorug05G0358300 Rorug07G0319700.1
rosa_samantha	Rh1CG051300 Rh1DG131600 Rh2AG545400 Rh2CG479300 Rh4BG413700 Rh4CG274700 Rh6AG173000 Rh6AG233400 Rh6BG302600 Rh6BG438300 Rh7BG350800
rosa_wichuraiana	Rw5G039170 Rw6G020370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	165
AjnI	CCWGG	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	193
BcgI	CGANNNNNNTGC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	15
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	15
BmiI	GGNNCC	2 cut(s)	12, 63
BmrFI	CCNGG	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	193
BsiSI	CCGG	1 cut(s)	247
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	2 cut(s)	148, 249
BspACI	CCGC	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	12, 63
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	2 cut(s)	148, 249
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	10, 124
BstC8I	GCNNGC	2 cut(s)	171, 204
BstKTI	GATC	2 cut(s)	151, 252
BstMBI	GATC	2 cut(s)	148, 249
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	171, 204
Csp6I	GTAC	1 cut(s)	164
CviJI	RGCY	2 cut(s)	64, 202
CviKI_1	RGCY	2 cut(s)	64, 202
CviQI	GTAC	1 cut(s)	164
DpnI	GATC	2 cut(s)	150, 251
DpnII	GATC	2 cut(s)	148, 249
Eco24I	GRGCYC	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	66
FaiI	YATR	2 cut(s)	28, 219
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	207
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	207
GluI	GCNGC	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	80
HapII	CCGG	1 cut(s)	247
HpaII	CCGG	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	254
Hpy188III	TCNNGA	1 cut(s)	59
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4III	ACNGT	2 cut(s)	10, 124
HpyCH4V	TGCA	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	148, 249
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	6 cut(s)	27, 44, 87, 119, 155, 221
Lsp1109I	GCAGC	1 cut(s)	193
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	2 cut(s)	150, 251
MboI	GATC	2 cut(s)	148, 249
MboII	GAAGA	2 cut(s)	52, 55
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	66
MnlI	CCTC	2 cut(s)	83, 86
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	199
NdeII	GATC	2 cut(s)	148, 249
NlaIV	GGNNCC	2 cut(s)	12, 63
NmuCI	GTSAC	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	12, 63
PsuI	RGATCY	1 cut(s)	249
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	2 cut(s)	148, 249
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	1 cut(s)	75
SsiI	CCGC	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	13
TaaI	ACNGT	2 cut(s)	10, 124
TatI	WGTACW	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	245
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.