Rroxscaffold_4G00314580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0005895
Physical Location & Seq
Reverse (-)
38576414 .. 38577859
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00314580.1

Sequence Viewer

Length: 396 bp
ATGGACTCAGTAGAGATTGAGAGATCCGGTAGAGGCGACACCGATTTCCGAGACTTGCTTCGAGAGATCCTCGGGAGGTCTGATTTCATTCTTGAGCTTTTCGAGAGTTCCAATGGCCACCGTTCCAGGACAGTTGATCCGGGAGATTGTCAAGAAGAACAACTCCTTGGTCAAGTAGTTCGGCCGGAGCCACGCCGGCGTCCATTTCAACAAGCGGATGAAGAACAAGCTAGGTTGATAGAAGAAGAAGGAAGGAGGAAAAGTTCGGCCGCTAAGGTGAGAAAACAGGGCTCAAGTGTTAGTGACCATAGGGAAGGCAATTTTGCCTCTTCCGGTAAGTTCGGTCATCAATTAAGTGACCATGCAGCACGGAGGCAATTTCAAGCTATTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.94

Weight (kDa)

5.86

Isoelectric Point (pI)

80.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 215, 270
AclWI GGATC 3 cut(s) 18, 61, 131
AcoI YGGCCR 3 cut(s) 115, 182, 267
AcyI GRCGYC 1 cut(s) 199
AgsI TTSAA 2 cut(s) 209, 383
AjnI CCWGG 1 cut(s) 125
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
AloI GAACNNNNNNTCC 2 cut(s) 247, 279
AluBI AGCT 3 cut(s) 97, 230, 386
AluI AGCT 3 cut(s) 97, 230, 386
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 3 cut(s) 18, 61, 131
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 3 cut(s) 115, 182, 267
ApeKI GCWGC 1 cut(s) 365
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 289
AvaI CYCGRG 1 cut(s) 71
BalI TGGCCA 1 cut(s) 117
BanII GRGCYC 1 cut(s) 293
BbvI GCAGC 1 cut(s) 377
BciT130I CCWGG 1 cut(s) 127
BcnI CCSGG 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 1 cut(s) 231
BglI GCCNNNNNGGC 1 cut(s) 196
BisI GCNGC 2 cut(s) 270, 366
BlsI GCNGC 2 cut(s) 271, 367
Bme1390I CCNGG 2 cut(s) 127, 141
BmeT110I CYCGRG 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 2 cut(s) 127, 141
BplI GAGNNNNNCTC 2 cut(s) 54, 86
Bpu10I CCTNAGC 1 cut(s) 273
BpuEI CTTGAG 2 cut(s) 113, 277
BpuMI CCSGG 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 199
BsaJI CCNNGG 2 cut(s) 70, 166
BsaWI WCCGGW 2 cut(s) 26, 332
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bse118I RCCGGY 1 cut(s) 195
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 2 cut(s) 70, 166
BseGI GGATG 1 cut(s) 223
BseMII CTCAG 1 cut(s) 21
BseX3I CGGCCG 2 cut(s) 182, 267
BseXI GCAGC 1 cut(s) 377
Bsh1285I CGRYCG 2 cut(s) 185, 270
BshFI GGCC 3 cut(s) 117, 184, 269
BsiEI CGRYCG 2 cut(s) 185, 270
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 5 cut(s) 27, 140, 185, 196, 333
BsmAI GTCTC 1 cut(s) 45
BsnI GGCC 3 cut(s) 117, 184, 269
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 293
Bsp143I GATC 3 cut(s) 23, 66, 136
BspACI CCGC 2 cut(s) 215, 270
BspANI GGCC 3 cut(s) 117, 184, 269
BspCNI CTCAG 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 189
BspPI GGATC 3 cut(s) 18, 61, 131
BsrFI RCCGGY 1 cut(s) 195
BssAI RCCGGY 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 70, 166
BssMI GATC 3 cut(s) 23, 66, 136
BssNI GRCGYC 1 cut(s) 199
BssT1I CCWWGG 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 127
Bst4CI ACNGT 2 cut(s) 122, 133
Bst6I CTCTTC 1 cut(s) 334
BstACI GRCGYC 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 197
BstDEI CTNAG 2 cut(s) 7, 273
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 3 cut(s) 26, 69, 139
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 3 cut(s) 23, 66, 136
BstMCI CGRYCG 2 cut(s) 185, 270
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 2 cut(s) 125, 139
BstV1I GCAGC 1 cut(s) 377
BstX2I RGATCY 2 cut(s) 23, 66
BstYI RGATCY 2 cut(s) 23, 66
BstZI CGGCCG 2 cut(s) 182, 267
BsuRI GGCC 3 cut(s) 117, 184, 269
BtsCI GGATG 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 195
CseI GACGC 1 cut(s) 188
CviAII CATG 1 cut(s) 362
CviJI RGCY 8 cut(s) 97, 117, 184, 190, 230, 269, 291, 386
CviKI_1 RGCY 8 cut(s) 97, 117, 184, 190, 230, 269, 291, 386
DdeI CTNAG 2 cut(s) 7, 273
DpnI GATC 3 cut(s) 25, 68, 138
DpnII GATC 3 cut(s) 23, 66, 136
EaeI YGGCCR 3 cut(s) 115, 182, 267
EagI CGGCCG 2 cut(s) 182, 267
Eam1104I CTCTTC 1 cut(s) 334
EarI CTCTTC 1 cut(s) 334
EclXI CGGCCG 2 cut(s) 182, 267
Eco130I CCWWGG 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 293
Eco52I CGGCCG 2 cut(s) 182, 267
Eco88I CYCGRG 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 166
FaeI CATG 1 cut(s) 365
FaiI YATR 2 cut(s) 309, 363
FatI CATG 1 cut(s) 361
Fnu4HI GCNGC 2 cut(s) 270, 366
FokI GGATG 1 cut(s) 230
FriOI GRGCYC 1 cut(s) 293
Fsp4HI GCNGC 2 cut(s) 270, 366
FspBI CTAG 1 cut(s) 231
GluI GCNGC 2 cut(s) 270, 366
HaeIII GGCC 3 cut(s) 117, 184, 269
HapII CCGG 5 cut(s) 27, 140, 185, 196, 333
HgaI GACGC 1 cut(s) 188
Hin1I GRCGYC 1 cut(s) 199
Hin1II CATG 1 cut(s) 365
HinfI GANTC 1 cut(s) 5
HpaII CCGG 5 cut(s) 27, 140, 185, 196, 333
HphI GGTGA 1 cut(s) 289
Hpy188I TCNGA 2 cut(s) 50, 82
Hpy188III TCNNGA 5 cut(s) 62, 73, 92, 103, 152
HpyAV CCTTC 3 cut(s) 242, 246, 308
HpyCH4III ACNGT 2 cut(s) 122, 133
HpyCH4V TGCA 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 2 cut(s) 7, 273
Hsp92I GRCGYC 1 cut(s) 199
Hsp92II CATG 1 cut(s) 365
KroI GCCGGC 1 cut(s) 195
KroNI GCCGGC 1 cut(s) 197
Kzo9I GATC 3 cut(s) 23, 66, 136
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 8 cut(s) 40, 112, 139, 153, 198, 209, 272, 346
Lsp1109I GCAGC 1 cut(s) 377
MaeI CTAG 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 302, 356
MalI GATC 3 cut(s) 25, 68, 138
MboI GATC 3 cut(s) 23, 66, 136
MboII GAAGA 5 cut(s) 167, 233, 254, 257, 321
MflI RGATCY 2 cut(s) 23, 66
MhlI GDGCHC 1 cut(s) 293
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 3 cut(s) 319, 350, 377
MluNI TGGCCA 1 cut(s) 117
MnlI CCTC 6 cut(s) 26, 69, 80, 249, 337, 366
Mox20I TGGCCA 1 cut(s) 117
MreI CGCCGGCG 1 cut(s) 195
MroNI GCCGGC 1 cut(s) 195
MscI TGGCCA 1 cut(s) 117
MseI TTAA 1 cut(s) 353
Msp20I TGGCCA 1 cut(s) 117
MspI CCGG 5 cut(s) 27, 140, 185, 196, 333
MspR9I CCNGG 2 cut(s) 127, 141
MvaI CCWGG 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 196
NaeI GCCGGC 1 cut(s) 197
NciI CCSGG 1 cut(s) 141
NdeII GATC 3 cut(s) 23, 66, 136
NgoMIV GCCGGC 1 cut(s) 195
NlaIII CATG 1 cut(s) 365
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 2 cut(s) 302, 356
PdiI GCCGGC 1 cut(s) 197
PfoI TCCNGGA 2 cut(s) 125, 139
PkrI GCNGC 2 cut(s) 271, 367
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 189
PsuI RGATCY 2 cut(s) 23, 66
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 2 cut(s) 270, 366
Sau3AI GATC 3 cut(s) 23, 66, 136
ScrFI CCNGG 2 cut(s) 127, 141
SduI GDGCHC 1 cut(s) 293
SetI ASST 6 cut(s) 80, 99, 232, 236, 279, 388
SgrAI CRCCGGYG 1 cut(s) 195
SmlI CTYRAG 2 cut(s) 92, 292
SmoI CTYRAG 2 cut(s) 92, 292
Sse9I AATT 3 cut(s) 319, 350, 377
SsiI CCGC 2 cut(s) 215, 270
SspMI CTAG 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 125, 139
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 2 cut(s) 122, 133
TaqI TCGA 2 cut(s) 61, 102
TaqII GACCGA 1 cut(s) 332
TasI AATT 3 cut(s) 319, 350, 377
TauI GCSGC 1 cut(s) 272
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TseFI GTSAC 2 cut(s) 302, 356
TseI GCWGC 1 cut(s) 365
Tsp45I GTSAC 2 cut(s) 302, 356
TspDTI ATGAA 2 cut(s) 76, 234
TspGWI ACGGA 1 cut(s) 385
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.